Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0063.Seq
         (628 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    21   7.4  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   7.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   7.4  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   9.8  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   9.8  

>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +3

Query: 9   RTFAELF*EQVTRLIKYK 62
           RTFA  F   VT  IKY+
Sbjct: 243 RTFAPFFTRVVTDTIKYR 260


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -3

Query: 548 GTCIFCGLSGESLSTR 501
           G C  C + G++LST+
Sbjct: 369 GVCYTCDVCGKTLSTK 384


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/29 (31%), Positives = 13/29 (44%)
 Frame = +1

Query: 502  RVLNDSPDKPQKMQVPSQA*TFSDHQLTH 588
            + L  +P +PQ+ Q   Q       QL H
Sbjct: 1441 KTLTSAPQQPQQQQQQQQQQQQQQQQLNH 1469


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 195 TDTERLIGDAAKNQVAMNPNTQ 260
           TD+ +LIG  A  +   N NT+
Sbjct: 130 TDSYKLIGRIAAGEGRFNTNTE 151


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/12 (58%), Positives = 11/12 (91%)
 Frame = +2

Query: 242 DEPQHTIFDAKR 277
           DEP++ IFDA++
Sbjct: 551 DEPKYFIFDAEK 562


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,642
Number of Sequences: 438
Number of extensions: 4351
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)