Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0062.Seq
         (742 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    27   0.18 
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    24   1.3  
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    22   5.3  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    22   5.3  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   7.0  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 27.1 bits (57), Expect = 0.18
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +3

Query: 111 IFVWRTVLINFVSLIYYFEL**HFKKNDEEIVYFTCSS 224
           +F+W     + ++ I Y  L   F+K   EI+YF CS+
Sbjct: 411 LFLWLGYCNSLLNPIIYATLNRDFRKPFREILYFRCSN 448


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 625 WYKIVIFYQIQDRFWRTSN 569
           W+K  IFYQ+  R +  SN
Sbjct: 24  WWKNAIFYQVYPRSFMDSN 42


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/34 (23%), Positives = 20/34 (58%)
 Frame = +3

Query: 54  CSSKFLNVIFFLLLYVVLGIFVWRTVLINFVSLI 155
           C+   LN +   ++   +G+F   T+LI+++ ++
Sbjct: 69  CADTRLNKLAVFIVAGAVGVFSSPTILISYIYIL 102


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/34 (23%), Positives = 20/34 (58%)
 Frame = +3

Query: 54  CSSKFLNVIFFLLLYVVLGIFVWRTVLINFVSLI 155
           C+   LN +   ++   +G+F   T+LI+++ ++
Sbjct: 68  CADTRLNKLAVFIVAGAVGVFSVLTILISYIYIL 101


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -1

Query: 625 WYKIVIFYQIQDRFWRTSN 569
           WYK  + YQI  R ++ S+
Sbjct: 26  WYKNALVYQIYPRSFQDSD 44


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,160
Number of Sequences: 438
Number of extensions: 3707
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)