Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0060.Seq
         (788 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A2FI01 Cluster: Putative uncharacterized protein; n=1; ...    36   1.5  
UniRef50_Q91741 Cluster: Fourth component of complement; n=2; Xe...    35   2.7  

>UniRef50_A2FI01 Cluster: Putative uncharacterized protein; n=1;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 1716

 Score = 35.5 bits (78), Expect = 1.5
 Identities = 19/52 (36%), Positives = 29/52 (55%)
 Frame = +1

Query: 61  T*KAYFVNFYS*HKLISQYNFIDFSEYNVFV*NISRNINFRCISQIIDVSFP 216
           T + YF +F S HK+   YN+  +  Y+V + N+   +N  CIS II  + P
Sbjct: 527 TIEGYFQDFKSGHKISVYYNYDRY--YDVEIPNVVATMNESCISDIISFTIP 576


>UniRef50_Q91741 Cluster: Fourth component of complement; n=2;
            Xenopus|Rep: Fourth component of complement - Xenopus
            laevis (African clawed frog)
          Length = 1683

 Score = 34.7 bits (76), Expect = 2.7
 Identities = 21/84 (25%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
 Frame = -1

Query: 350  LLNIEYNIIEKLCRDIRLHAHYVGTLQLSSG*RIHSKTYLTQKLPGNETSIICEIHL-KF 174
            +L++  N I+    DIRL A Y+ T+Q  +G      + + Q + G  T+I  E+ +  +
Sbjct: 1071 VLSLCRNYIDVNVEDIRLSAQYLATMQKDTGAFQEKVSVIHQDMLGGSTTIDAEVSITAY 1130

Query: 173  IFLEIFYTNTLYSEKSIKLY*EIS 102
            + + ++++    SE ++ +  +IS
Sbjct: 1131 VTVSLYHSLDSLSEDNVAVKSKIS 1154


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 661,076,029
Number of Sequences: 1657284
Number of extensions: 12049814
Number of successful extensions: 22589
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 21798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22583
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 67085240885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)