Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0060.Seq
         (788 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.07c |mug150||sequence orphan|Schizosaccharomyces pombe|...    27   3.1  
SPBC1718.02 |hop1||linear element associated protein Hop1|Schizo...    26   7.1  
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo...    26   7.1  
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co...    26   7.1  

>SPCC1322.07c |mug150||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 104

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
 Frame = -1

Query: 203 SIICEIHL-KFIFLEI-FYTNTLYSEKSIKLY*EISLC 96
           S+ C+  L  F+F+ I ++T  LY++ S+  +  +SLC
Sbjct: 56  SLCCDFPLFNFLFIAIPYFTEILYNDSSLLWFLFVSLC 93


>SPBC1718.02 |hop1||linear element associated protein
           Hop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 528

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = -1

Query: 674 WFFFRFKAPEMCKYF--NYFGPTKCATSNRHFTN 579
           W +F  K+PEM  Y    YF P++   S+ +F N
Sbjct: 451 WIYFTNKSPEMVSYLREKYFTPSRW-ISHLNFQN 483


>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
           Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +3

Query: 477 FRFALHFCLLFILGPGKNFLA 539
           F F +HF +L I GPG +F++
Sbjct: 300 FWFYMHFNILTISGPGDSFMS 320


>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 479 KLFKYLNTMTMKFSITITVLLINDY 405
           +LF+YL   T  +   +T LL NDY
Sbjct: 524 ELFEYLQEKTTYYKNNLTTLLNNDY 548


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,983,770
Number of Sequences: 5004
Number of extensions: 57739
Number of successful extensions: 121
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)