Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0060.Seq
         (788 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117203-8|CAB55110.1|  376|Caenorhabditis elegans Hypothetical ...    29   3.8  
AC006804-2|AAL32253.2|  372|Caenorhabditis elegans Hypothetical ...    28   6.6  

>AL117203-8|CAB55110.1|  376|Caenorhabditis elegans Hypothetical
           protein Y48C3A.11 protein.
          Length = 376

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -1

Query: 488 CKPKLFKYLNTMTMKFSITITVLL 417
           C+P  F Y    TM FS+T++VL+
Sbjct: 86  CQPFFFSYYLATTMHFSVTVSVLV 109


>AC006804-2|AAL32253.2|  372|Caenorhabditis elegans Hypothetical
           protein Y53G8B.3 protein.
          Length = 372

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 595 IDISRIGYFYRVSKFLLVYAKKFLPG 518
           I + R G+ YR+ K+L +Y +  LPG
Sbjct: 252 ISMRRRGFLYRIRKYLKLYYQFLLPG 277


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,266,056
Number of Sequences: 27780
Number of extensions: 319047
Number of successful extensions: 577
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)