Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0058.Seq
(660 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula... 28 1.0
SPBC119.15 |||AAA family ATPase, unknown biological role|Schizos... 28 1.4
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 27 3.2
SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|c... 26 4.2
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy... 26 4.2
SPAP27G11.05c |vps41||vacuolar protein sorting-associated protei... 26 5.5
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S... 26 5.5
SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch... 26 5.5
SPBC21B10.08c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 25 7.3
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 9.7
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 25 9.7
>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
Prp45|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 28.3 bits (60), Expect = 1.0
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -1
Query: 471 DAVRRREDVPRGEHRPAEQPLRLLRARTEQQQR 373
+A RRR+++ R R AE+ LRL R E++ +
Sbjct: 386 EAFRRRQELRRERRRQAEKDLRLSRMGAEKRAK 418
>SPBC119.15 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 27.9 bits (59), Expect = 1.4
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +2
Query: 185 TNKKSWDACIDYVLNIPEYFSTST 256
T SW CI YV++ P STST
Sbjct: 131 TLASSWPTCIAYVVDTPRATSTST 154
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 26.6 bits (56), Expect = 3.2
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -3
Query: 241 ILRYVQNVIDTSVPRFFICFFESAVSPRQVYVI 143
+ RY +N D +P F F E AV+P V+ I
Sbjct: 174 LYRYGKNCFDIPIPTFGTLFKEHAVAPFFVFQI 206
>SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
3|||Manual
Length = 625
Score = 26.2 bits (55), Expect = 4.2
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -1
Query: 135 STSSQSVQHTMCSLPRSPHTGGKDLS 58
STSS HT+ S +S HT G S
Sbjct: 553 STSSSGSSHTITSTSQSVHTSGSSTS 578
>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 786
Score = 26.2 bits (55), Expect = 4.2
Identities = 15/49 (30%), Positives = 20/49 (40%)
Frame = +3
Query: 501 RSSGILKRSDPPEIWQRHTLAQVIPHPDYASPSKYHDIALLKTEQTIIF 647
R I K P ++ HT + PDY S H+ L E T+ F
Sbjct: 735 RKFTIEKAGTPDQLPVAHTCFNRLDLPDYPSKDTLHEKLSLAVENTVGF 783
>SPAP27G11.05c |vps41||vacuolar protein sorting-associated protein
Vps41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 886
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = +2
Query: 128 LVDNIDNIYLTRRYSRLEKTNKKSWDACIDYVLNIPEYFST 250
+++ + +I RY + E+ +++ WD I Y L+ PE+ T
Sbjct: 677 IINELLDIGRAIRYVK-EQADRELWDDLISYSLDKPEFICT 716
>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 672
Score = 25.8 bits (54), Expect = 5.5
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +3
Query: 483 PGTLEVRSSGILKRSDPPEIWQRHTLAQVIPHPDYASPSKYHDIAL 620
P TL SS +LK + R ++ Q+I HP Y + YH ++
Sbjct: 245 PETLSKNSSSLLKSLLCKDYRLRPSIDQIISHP-YFKENGYHSSSI 289
>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 815
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -3
Query: 211 TSVPRFFICFFESAVSPRQVYVIDVVHELTVGAA 110
T PRF I F S+V PR++ + + L + A
Sbjct: 199 TPTPRFSIDFMVSSVDPREIQLPGIEEALCITKA 232
>SPBC21B10.08c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 198
Score = 25.4 bits (53), Expect = 7.3
Identities = 12/46 (26%), Positives = 20/46 (43%)
Frame = +1
Query: 364 PFMALLLFGASAEEAQWLFGGSVLSARYILTAAHCISEPRLGPLKY 501
PF F A+ ++FG + ++ +L +H S P L Y
Sbjct: 40 PFTKTYYFARDAKNPDYIFGLELYDSKEVLENSHKTSNPFLAFANY 85
>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 262
Score = 25.0 bits (52), Expect = 9.7
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +3
Query: 450 PHGGALHLRATPGTLEVRSSGILKRSDPPEIWQRHTLAQVIPHPDYASPSKY 605
P G L + PG+ R S + + PP + + ++Q+ P P Y+S Y
Sbjct: 115 PSRGTPSLPSRPGS---RPSVLNQEQVPPPPVRPNVMSQMPPPPSYSSSGSY 163
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 25.0 bits (52), Expect = 9.7
Identities = 14/57 (24%), Positives = 23/57 (40%)
Frame = -1
Query: 414 PLRLLRARTEQQQRHEGELRSFGVFTAYR*LPSNIYSVTFLLRIPSFVNIKRHVLVL 244
P L T +R E L+ G F I + F +IPS + + H+ ++
Sbjct: 3312 PFALQYPATRHSRREERMLQLLGTFNTVLRSKIEIQNRNFSFQIPSSIPLSSHMRII 3368
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,405,217
Number of Sequences: 5004
Number of extensions: 46029
Number of successful extensions: 123
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -