Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0058.Seq
         (660 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0833 - 28045442-28045881,28045961-28046063,28046172-280462...    30   1.9  
08_02_0252 + 14868530-14868757                                         29   4.3  
05_04_0012 + 17145112-17145205,17145681-17145752,17145832-171459...    28   5.7  

>03_05_0833 -
           28045442-28045881,28045961-28046063,28046172-28046203,
           28046299-28046516,28046606-28046721,28047757-28048000,
           28048423-28048510,28048596-28048667,28048758-28048869,
           28049047-28049115,28049627-28049685,28050067-28050325
          Length = 603

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/52 (28%), Positives = 22/52 (42%)
 Frame = +3

Query: 54  TGIDPSRRCAGCAARSTSCAAPTVSSWTTSITYT*RGDTADSKKQIKNLGTL 209
           TG DP  RC  CAA   S   P + +    +++    D   +K Q    G +
Sbjct: 257 TGTDPPNRCTKCAAGGNSATEPYIVAHNIILSHATAVDRYRNKFQASQKGKI 308


>08_02_0252 + 14868530-14868757
          Length = 75

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 21/46 (45%), Positives = 25/46 (54%), Gaps = 8/46 (17%)
 Frame = -1

Query: 459 RREDVPRGEHRPAE--------QPLRLLRARTEQQQRHEGELRSFG 346
           RRE V R EH+P E        +P RLLR R   + R EG LR +G
Sbjct: 32  RREGVDRLEHKPPECVKGKENARPQRLLRVRI--RIRREGVLRMWG 75


>05_04_0012 +
           17145112-17145205,17145681-17145752,17145832-17145911,
           17146059-17146175,17146282-17146363,17147086-17147141,
           17147258-17147560,17147658-17147744,17148118-17148292,
           17148370-17148491,17149028-17149191,17149277-17149531,
           17150419-17150540,17150656-17150777,17151302-17151450,
           17151565-17151703,17151831-17151866
          Length = 724

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -3

Query: 580 GCGMTWARVCRCQISGGSERFRIPELRTSRVPGV 479
           G G+    VC  ++S  S +  +PEL+   +PG+
Sbjct: 114 GGGLELVMVCHARVSTSSAQLGLPELQLGIIPGL 147


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,983,077
Number of Sequences: 37544
Number of extensions: 347552
Number of successful extensions: 1048
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1026
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1048
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)