Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0058.Seq
         (660 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like p...    33   0.24 
U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like p...    29   2.2  
AL033509-1|CAA22059.1| 1494|Caenorhabditis elegans Hypothetical ...    29   3.9  
AF098987-7|AAC67430.1|  310|Caenorhabditis elegans Forkhead tran...    28   6.8  
AF003384-12|AAB54236.2|  331|Caenorhabditis elegans Trypsin-like...    28   6.8  
Z29560-2|CAA82662.1| 1131|Caenorhabditis elegans Hypothetical pr...    27   8.9  
AF120269-1|AAD13795.1| 1131|Caenorhabditis elegans sex determina...    27   8.9  

>U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like
           protease protein 1 protein.
          Length = 293

 Score = 32.7 bits (71), Expect = 0.24
 Identities = 18/61 (29%), Positives = 30/61 (49%)
 Frame = +1

Query: 331 VGGEDAERAEFPFMALLLFGASAEEAQWLFGGSVLSARYILTAAHCISEPRLGPLKYAAP 510
           +GG ++    +P+   LL            GGS++   ++LTAAHC ++ R  P  Y+  
Sbjct: 59  IGGSESSPHSWPWTVQLLSRLGHHRC----GGSLIDPNFVLTAAHCFAKDR-RPTSYSVR 113

Query: 511 V 513
           V
Sbjct: 114 V 114


>U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like
           protease protein 2 protein.
          Length = 265

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = +1

Query: 331 VGGEDAERAEFPFMALLLFGASAEEAQWLFGGSVLSARYILTAAHCISE 477
           VGG +     FP+ A L   A+        G S+L   +++TAAHC  E
Sbjct: 28  VGGFETVPGAFPWTAALRNKATKAHH---CGASILDKTHLITAAHCFEE 73


>AL033509-1|CAA22059.1| 1494|Caenorhabditis elegans Hypothetical
           protein Y113G7C.1 protein.
          Length = 1494

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 15/58 (25%), Positives = 26/58 (44%)
 Frame = +3

Query: 477 ATPGTLEVRSSGILKRSDPPEIWQRHTLAQVIPHPDYASPSKYHDIALLKTEQTIIFN 650
           A+P T++  S   L+    P +W+R +     P    +SP K  ++ L     T + N
Sbjct: 100 ASPPTVKAPSRRKLRAGRSPSLWKRDSALGSAPSRPDSSPPKLPELHLAYVNHTTVTN 157


>AF098987-7|AAC67430.1|  310|Caenorhabditis elegans Forkhead
           transcription factor familyprotein 8 protein.
          Length = 310

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 10/26 (38%), Positives = 19/26 (73%), Gaps = 2/26 (7%)
 Frame = +2

Query: 146 NIYLTRRYSRLEKT--NKKSWDACID 217
           N+ L +++SR+EKT  +++ W  C+D
Sbjct: 108 NLSLNKQFSRIEKTDGDRRGWWVCVD 133


>AF003384-12|AAB54236.2|  331|Caenorhabditis elegans Trypsin-like
           protease protein 5 protein.
          Length = 331

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 10/38 (26%), Positives = 23/38 (60%)
 Frame = +1

Query: 364 PFMALLLFGASAEEAQWLFGGSVLSARYILTAAHCISE 477
           P+   +   A   + + + GG++++ +++LTAAHC  +
Sbjct: 44  PWAVQIRVKARKGDFEVICGGTLITLKHVLTAAHCFQK 81


>Z29560-2|CAA82662.1| 1131|Caenorhabditis elegans Hypothetical
           protein K03H1.2 protein.
          Length = 1131

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = -1

Query: 489 SQAWLGDAVRRREDVPRGEHRPAEQPLRLLRARTEQQQRHEGELRS 352
           S AW  +  R R+D  R  HR  E  +R ++    +   H+ E R+
Sbjct: 176 SSAWRSER-RNRDDEKRRRHRKPEDSVRSVKEEKAEPTFHDDEERA 220


>AF120269-1|AAD13795.1| 1131|Caenorhabditis elegans sex
           determination protein MOG-1 protein.
          Length = 1131

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = -1

Query: 489 SQAWLGDAVRRREDVPRGEHRPAEQPLRLLRARTEQQQRHEGELRS 352
           S AW  +  R R+D  R  HR  E  +R ++    +   H+ E R+
Sbjct: 176 SSAWRSER-RNRDDEKRRRHRKPEDSVRSVKEEKAEPTFHDDEERA 220


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,680,768
Number of Sequences: 27780
Number of extensions: 274544
Number of successful extensions: 796
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 796
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)