Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0058.Seq
         (660 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    40   3e-05
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   3.4  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   4.5  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   4.5  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   4.5  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   4.5  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   6.0  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 39.5 bits (88), Expect = 3e-05
 Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
 Frame = +1

Query: 310 NITWQLP---VGGEDAERAEFPFMALLLFGASAEEAQWLFGGSVLSARYILTAAHCI 471
           N  W+ P   VGG +    EFP MA +       E   + G +++S RY+LTAAHCI
Sbjct: 152 NCGWKNPSRIVGGTNTGINEFPMMAGI---KRTYEPGMICGATIISKRYVLTAAHCI 205



 Score = 29.1 bits (62), Expect = 0.039
 Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
 Frame = +3

Query: 552 HTLAQVIPHPDYASPSK----YHDIALLKTEQTIIFNVNV 659
           H++ +VI HP Y    K     +DIALLKTE+ I F   V
Sbjct: 234 HSINKVIIHPKYDIIEKDDWQINDIALLKTEKDIKFGDKV 273


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -1

Query: 135 STSSQSVQHTMCSLPRSPHTGGKDLSL*SRMSVSQRLLSTH 13
           S+S+ S   ++CS PRS     +D+ +  R+  +  L  T+
Sbjct: 594 SSSASSAPTSVCSSPRSEDKEVEDMPVLKRVLQAPPLYDTN 634


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = +2

Query: 71  PPVCGLRGKEHIVCCTDC 124
           PP     G   IV CT+C
Sbjct: 413 PPTGATTGPNEIVTCTNC 430


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = +2

Query: 71  PPVCGLRGKEHIVCCTDC 124
           PP     G   IV CT+C
Sbjct: 399 PPTGATTGPNEIVTCTNC 416


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = +2

Query: 71  PPVCGLRGKEHIVCCTDC 124
           PP     G   IV CT+C
Sbjct: 433 PPTGATTGPNEIVTCTNC 450


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = +2

Query: 71  PPVCGLRGKEHIVCCTDC 124
           PP     G   IV CT+C
Sbjct: 382 PPTGATTGPNEIVTCTNC 399


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 570 IPHPDYASPSKYHDIALLKTE 632
           I   D ++  KY D+ +LKT+
Sbjct: 593 IEFTDLSNERKYEDVCVLKTD 613


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,935
Number of Sequences: 438
Number of extensions: 3606
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)