Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0056.Seq
         (673 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC132690-1|AAI32691.1|  651|Homo sapiens RRN3 RNA polymerase I t...    31   3.8  
BC132688-1|AAI32689.1|  651|Homo sapiens RRN3 RNA polymerase I t...    31   3.8  
BC071868-1|AAH71868.1|  430|Homo sapiens RRN3 protein protein.         31   3.8  
AJ272050-1|CAC07955.1|  651|Homo sapiens transcription initiatio...    31   3.8  
AF227156-1|AAF66160.1|  651|Homo sapiens RRN3 protein.                 31   3.8  

>BC132690-1|AAI32691.1|  651|Homo sapiens RRN3 RNA polymerase I
           transcription factor homolog (S. cerevisiae) protein.
          Length = 651

 Score = 31.1 bits (67), Expect = 3.8
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
 Frame = +3

Query: 288 YLELSGKY-LIFTYTILTKQQRNMIQ*LRSDA--DGI*ICLN 404
           +  ++ KY L+F YTI+ +  R M+  +RS A  D + IC N
Sbjct: 513 FAAITNKYQLVFCYTIIERNNRQMLPVIRSTAGGDSVQICTN 554


>BC132688-1|AAI32689.1|  651|Homo sapiens RRN3 RNA polymerase I
           transcription factor homolog (S. cerevisiae) protein.
          Length = 651

 Score = 31.1 bits (67), Expect = 3.8
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
 Frame = +3

Query: 288 YLELSGKY-LIFTYTILTKQQRNMIQ*LRSDA--DGI*ICLN 404
           +  ++ KY L+F YTI+ +  R M+  +RS A  D + IC N
Sbjct: 513 FAAITNKYQLVFCYTIIERNNRQMLPVIRSTAGGDSVQICTN 554


>BC071868-1|AAH71868.1|  430|Homo sapiens RRN3 protein protein.
          Length = 430

 Score = 31.1 bits (67), Expect = 3.8
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
 Frame = +3

Query: 288 YLELSGKY-LIFTYTILTKQQRNMIQ*LRSDA--DGI*ICLN 404
           +  ++ KY L+F YTI+ +  R M+  +RS A  D + IC N
Sbjct: 292 FAAITNKYQLVFCYTIIERNNRQMLPVIRSTAGGDSVQICTN 333


>AJ272050-1|CAC07955.1|  651|Homo sapiens transcription initiation
           factor IA protein protein.
          Length = 651

 Score = 31.1 bits (67), Expect = 3.8
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
 Frame = +3

Query: 288 YLELSGKY-LIFTYTILTKQQRNMIQ*LRSDA--DGI*ICLN 404
           +  ++ KY L+F YTI+ +  R M+  +RS A  D + IC N
Sbjct: 513 FAAITNKYQLVFCYTIIERNNRQMLPVIRSTAGGDSVQICTN 554


>AF227156-1|AAF66160.1|  651|Homo sapiens RRN3 protein.
          Length = 651

 Score = 31.1 bits (67), Expect = 3.8
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
 Frame = +3

Query: 288 YLELSGKY-LIFTYTILTKQQRNMIQ*LRSDA--DGI*ICLN 404
           +  ++ KY L+F YTI+ +  R M+  +RS A  D + IC N
Sbjct: 513 FAAITNKYQLVFCYTIIERNNRQMLPVIRSTAGGDSVQICTN 554


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,883,320
Number of Sequences: 237096
Number of extensions: 1229629
Number of successful extensions: 1536
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1530
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7647512560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)