Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0056.Seq
         (673 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   2.0  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     23   2.0  
M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee homeobox-...    23   3.5  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    22   4.6  
M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee homeobox-...    22   6.1  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   6.1  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   6.1  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   6.1  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    21   8.1  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 6/19 (31%), Positives = 13/19 (68%)
 Frame = +1

Query: 478 YNYYH*QTLPFLNEFYYNI 534
           +++YH + LPF+ + Y  +
Sbjct: 344 FDFYHPEDLPFIKDIYETV 362


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 6/19 (31%), Positives = 13/19 (68%)
 Frame = +1

Query: 478 YNYYH*QTLPFLNEFYYNI 534
           +++YH + LPF+ + Y  +
Sbjct: 50  FDFYHPEDLPFIKDIYETV 68


>M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H15. ).
          Length = 74

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +1

Query: 457 CMSNAYQYNYYH*QTLPFLNEFYYNIFYYLAKR 555
           C     +  Y   QTL    EF+YN  +YL +R
Sbjct: 6   CPRRRGRQTYTRFQTLELEKEFHYN--HYLTRR 36


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +2

Query: 356 DTMTSVRCGRYLN 394
           D M + RCGRY N
Sbjct: 412 DLMRNTRCGRYHN 424


>M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H90. ).
          Length = 74

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = +1

Query: 484 YYH*QTLPFLNEFYYNIFYYLAKRCNTCH 570
           Y   QTL    EF+YN +    +R    H
Sbjct: 15  YTRYQTLELEKEFHYNRYLTRRRRIEIAH 43


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +3

Query: 297 LSGKYLIFTYTILT 338
           L GKYL+FT  ++T
Sbjct: 298 LLGKYLLFTMVLVT 311


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = +1

Query: 484 YYH*QTLPFLNEFYYNIFYYLAKRCNTCH 570
           Y   QTL    EF+YN +    +R    H
Sbjct: 277 YTRYQTLELEKEFHYNRYLTRRRRIEIAH 305


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 291 LELSGKYLIFTYTILT 338
           + L GKYL+FT  ++T
Sbjct: 309 IPLLGKYLLFTMILVT 324


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 402 NNNNHKNRILLFNKKI 449
           NNNN+K     +NKK+
Sbjct: 325 NNNNYKYNYNNYNKKL 340


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,397
Number of Sequences: 438
Number of extensions: 3206
Number of successful extensions: 25
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)