Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0055.Seq
(698 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81051-12|CAB02861.2| 228|Caenorhabditis elegans Hypothetical p... 58 6e-09
AL132876-38|CAD21663.2| 224|Caenorhabditis elegans Hypothetical... 48 5e-06
U40421-3|AAA81439.2| 347|Caenorhabditis elegans Hypothetical pr... 46 3e-05
Z66561-4|CAA91457.2| 185|Caenorhabditis elegans Hypothetical pr... 39 0.003
AL032639-3|CAA21635.1| 283|Caenorhabditis elegans Hypothetical ... 38 0.005
U10402-5|AAA19066.2| 650|Caenorhabditis elegans Tryptophanyl (w... 38 0.009
Z22177-12|CAA80152.1| 974|Caenorhabditis elegans Hypothetical p... 36 0.028
Z19155-5|CAA79562.1| 974|Caenorhabditis elegans Hypothetical pr... 36 0.028
U67953-1|AAQ91892.1| 398|Caenorhabditis elegans Hypothetical pr... 36 0.028
U41273-2|AAA82454.2| 306|Caenorhabditis elegans Hypothetical pr... 36 0.037
Z66495-6|CAA91275.2| 547|Caenorhabditis elegans Hypothetical pr... 35 0.049
Z19156-1|CAA79563.1| 160|Caenorhabditis elegans Hypothetical pr... 35 0.064
AF099919-4|AAC68791.1| 230|Caenorhabditis elegans Hypothetical ... 34 0.085
AC199170-5|ABO33263.1| 95|Caenorhabditis elegans Hypothetical ... 33 0.20
AF101310-1|AAC69216.2| 765|Caenorhabditis elegans Hypothetical ... 33 0.26
AF067623-4|AAC17556.2| 393|Caenorhabditis elegans Hypothetical ... 33 0.26
U97193-14|AAB52442.2| 381|Caenorhabditis elegans Ring finger pr... 32 0.34
Z46787-7|CAA86745.1| 235|Caenorhabditis elegans Hypothetical pr... 31 0.79
L26987-1|AAA62312.1| 627|Caenorhabditis elegans par-2 protein. 31 0.79
AF106580-2|AAK71369.1| 439|Caenorhabditis elegans Abnormal embr... 31 0.79
AF099919-6|AAC68803.1| 261|Caenorhabditis elegans Hypothetical ... 31 0.79
Z78413-3|CAB01659.1| 202|Caenorhabditis elegans Hypothetical pr... 30 1.4
U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five) in... 30 1.4
U23511-12|AAC46798.2| 610|Caenorhabditis elegans Hypothetical p... 30 1.4
U97193-12|AAB52441.1| 283|Caenorhabditis elegans Hypothetical p... 30 1.8
Z70208-5|CAA94134.1| 201|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z74035-3|CAA98481.1| 808|Caenorhabditis elegans Hypothetical pr... 29 4.2
Z69883-1|CAA93743.1| 829|Caenorhabditis elegans Hypothetical pr... 29 4.2
AL031635-7|CAB54384.2| 487|Caenorhabditis elegans Hypothetical ... 29 4.2
AC024791-32|AAY55887.1| 212|Caenorhabditis elegans Hypothetical... 29 4.2
Z68104-2|CAA92113.1| 359|Caenorhabditis elegans Hypothetical pr... 28 5.6
Z46787-5|CAA86743.1| 409|Caenorhabditis elegans Hypothetical pr... 28 5.6
U61944-5|AAB03121.2| 482|Caenorhabditis elegans Hypothetical pr... 28 5.6
AF098987-7|AAC67430.1| 310|Caenorhabditis elegans Forkhead tran... 28 5.6
Z80215-7|CAB02274.1| 674|Caenorhabditis elegans Hypothetical pr... 28 7.4
U64601-2|AAQ82847.1| 592|Caenorhabditis elegans Temporarily ass... 28 7.4
U64601-1|AAB04573.2| 564|Caenorhabditis elegans Temporarily ass... 28 7.4
U41026-1|AAM51522.2| 101|Caenorhabditis elegans Hypothetical pr... 28 7.4
AF067611-1|AAC19182.1| 603|Caenorhabditis elegans Hypothetical ... 28 7.4
AF016665-9|AAC71177.1| 363|Caenorhabditis elegans Nuclear hormo... 28 7.4
Z72509-6|CAA96650.1| 223|Caenorhabditis elegans Hypothetical pr... 27 9.8
U21310-4|AAA62518.1| 165|Caenorhabditis elegans Hypothetical pr... 27 9.8
AL021487-5|CAA16350.1| 244|Caenorhabditis elegans Hypothetical ... 27 9.8
AL021487-4|CAA16351.1| 244|Caenorhabditis elegans Hypothetical ... 27 9.8
AF067942-10|AAG45578.2| 358|Caenorhabditis elegans Hypothetical... 27 9.8
AC026301-1|AAK68897.1| 280|Caenorhabditis elegans Hypothetical ... 27 9.8
>Z81051-12|CAB02861.2| 228|Caenorhabditis elegans Hypothetical
protein C55A6.1 protein.
Length = 228
Score = 58.0 bits (134), Expect = 6e-09
Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Frame = +2
Query: 341 AANVDGVEGFQWYYEGRN-GWWKYDERSNSELENAFNNGESECTLLLAGTLYIVDFQQ 511
A+ D E W Y G+N GWW+++ R+ E+E A+N G+ C +++ G Y++DF Q
Sbjct: 102 ASICDPEERKYWIYSGKNQGWWRFEPRNEREIEEAYNAGKCHCEVVICGRPYVIDFHQ 159
Score = 41.9 bits (94), Expect = 4e-04
Identities = 16/34 (47%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Frame = +3
Query: 147 NMEYDCAVCLQKCQHPTKL-SCGHVFCFLCVKGV 245
N++ +C +C K PT + +CGH FCF+C+KGV
Sbjct: 7 NIDAECPICQCKMIVPTTIPACGHKFCFICLKGV 40
>AL132876-38|CAD21663.2| 224|Caenorhabditis elegans Hypothetical
protein Y105E8A.14 protein.
Length = 224
Score = 48.4 bits (110), Expect = 5e-06
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +2
Query: 374 WYYEGRN-GWWKYDERSNSELENAFNNGESECTLLLAGTLYIVDFQQ 511
W Y GR+ GWW++D R E+E AF + + + G YIVDF Q
Sbjct: 132 WLYRGRHQGWWRFDPRIEKEIEEAFTHQMPMTEVTICGNPYIVDFSQ 178
Score = 43.6 bits (98), Expect = 1e-04
Identities = 17/34 (50%), Positives = 25/34 (73%), Gaps = 1/34 (2%)
Frame = +3
Query: 150 MEYDCAVCLQKCQHPTKL-SCGHVFCFLCVKGVA 248
++ +CAVC + PT + SCGH FCF+C+KGV+
Sbjct: 20 IDKECAVCYSEMILPTTIPSCGHKFCFICLKGVS 53
>U40421-3|AAA81439.2| 347|Caenorhabditis elegans Hypothetical
protein C02B8.6 protein.
Length = 347
Score = 45.6 bits (103), Expect = 3e-05
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Frame = +2
Query: 329 NLQYAANVDGVEGFQWYYEGR-NGWWKYDERSNSELENAFNNGESECTLLLAGTLYIVDF 505
N+Q NV V+ F W Y R +GWW++D+R ++E+ F + + L G YI+DF
Sbjct: 244 NVQANFNVARVKFF-WLYSSRGDGWWRFDQRCEKDIEDEFLANKPNMEMYLFGKPYILDF 302
Score = 38.3 bits (85), Expect = 0.005
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 162 CAVCLQKCQHPTKLSCGHVFCFLCVKG 242
C +C P +L C H FC++C+KG
Sbjct: 5 CTICHNTPNRPVRLDCNHEFCYICIKG 31
>Z66561-4|CAA91457.2| 185|Caenorhabditis elegans Hypothetical
protein F08G12.5 protein.
Length = 185
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/31 (54%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +3
Query: 162 CAVCLQKCQH-PTKLSCGHVFCFLCVKGVAH 251
CAVCL Q P L+CGH FC C++ VAH
Sbjct: 40 CAVCLNIFQGIPQTLTCGHSFCHRCIEEVAH 70
>AL032639-3|CAA21635.1| 283|Caenorhabditis elegans Hypothetical
protein Y38F1A.2 protein.
Length = 283
Score = 38.3 bits (85), Expect = 0.005
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +3
Query: 144 HNMEYDCAVCLQKCQHPTKLSCGHVFCFLCV 236
H ++C +CL P CGH+FC C+
Sbjct: 99 HQSSHECPICLANASFPVLTDCGHIFCCECI 129
>U10402-5|AAA19066.2| 650|Caenorhabditis elegans Tryptophanyl (w)
trna synthetaseprotein 2, isoform a protein.
Length = 650
Score = 37.5 bits (83), Expect = 0.009
Identities = 11/28 (39%), Positives = 22/28 (78%)
Frame = +3
Query: 156 YDCAVCLQKCQHPTKLSCGHVFCFLCVK 239
+ C++CL+ ++P+ L CGH+FC+ C++
Sbjct: 253 FQCSICLEN-KNPSALFCGHLFCWTCIQ 279
>Z22177-12|CAA80152.1| 974|Caenorhabditis elegans Hypothetical
protein F54G8.4 protein.
Length = 974
Score = 35.9 bits (79), Expect = 0.028
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +3
Query: 162 CAVCLQKCQHPTKLSCGHVFCFLCVKGVAHQA-ENVQC 272
C +CL + + P L C H FC+ C++ A N++C
Sbjct: 43 CPICLDRYKQPKLLPCQHTFCYPCLESCADTLHRNLKC 80
>Z19155-5|CAA79562.1| 974|Caenorhabditis elegans Hypothetical
protein F54G8.4 protein.
Length = 974
Score = 35.9 bits (79), Expect = 0.028
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +3
Query: 162 CAVCLQKCQHPTKLSCGHVFCFLCVKGVAHQA-ENVQC 272
C +CL + + P L C H FC+ C++ A N++C
Sbjct: 43 CPICLDRYKQPKLLPCQHTFCYPCLESCADTLHRNLKC 80
>U67953-1|AAQ91892.1| 398|Caenorhabditis elegans Hypothetical
protein ZC13.1b protein.
Length = 398
Score = 35.9 bits (79), Expect = 0.028
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +3
Query: 153 EYDCAVCLQKCQHPTKLSCGHVFCFLCVK 239
E CAVC P KL C HVFC C++
Sbjct: 334 EQPCAVCHGDLLQPIKLECTHVFCKFCIE 362
>U41273-2|AAA82454.2| 306|Caenorhabditis elegans Hypothetical
protein C26B9.6 protein.
Length = 306
Score = 35.5 bits (78), Expect = 0.037
Identities = 12/27 (44%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = +3
Query: 162 CAVCLQKCQHPTKL-SCGHVFCFLCVK 239
C +C K PT++ +CGH FC++C+K
Sbjct: 107 CYICYYKLTIPTRIENCGHEFCYVCLK 133
Score = 29.1 bits (62), Expect = 3.2
Identities = 17/80 (21%), Positives = 37/80 (46%), Gaps = 9/80 (11%)
Frame = +2
Query: 368 FQWYYEGRN---GWWKYDERSNSELENAFNNGESECTLLLAGTLYIVDFQQ*L------N 520
+ W Y N +++ + +EN++ + C + + G + +DF++ L N
Sbjct: 10 YLWIYNDGNCKSNMYEFHKDLQEHIENSYKRKKKTCKVSIFGVTHTIDFEKMLKYRNRPN 69
Query: 521 SVEVIILAAAGAKEYPPVTC 580
+ EV + + AK+Y + C
Sbjct: 70 TSEVKRITRSQAKQYGVLGC 89
>Z66495-6|CAA91275.2| 547|Caenorhabditis elegans Hypothetical
protein C36A4.8 protein.
Length = 547
Score = 35.1 bits (77), Expect = 0.049
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = +3
Query: 153 EYDCAVCLQKCQHPTKLSCGHVFCFLCVKGVAHQAENVQC 272
E C +C + P +C H+FC C+ + VQC
Sbjct: 18 ELKCGICCSTYKDPILSTCFHIFCRSCINACFERKRKVQC 57
>Z19156-1|CAA79563.1| 160|Caenorhabditis elegans Hypothetical
protein T02C1.1 protein.
Length = 160
Score = 34.7 bits (76), Expect = 0.064
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +3
Query: 153 EYDCAVCLQKCQHPTKLSCGHVFCFLCVKGVAHQAENVQC 272
++ CAVCL P + CGH +C C++ +H N +C
Sbjct: 5 DFCCAVCLDFFVEPCIIECGHSYCRFCIE--SHLNINEKC 42
>AF099919-4|AAC68791.1| 230|Caenorhabditis elegans Hypothetical
protein F40G9.12 protein.
Length = 230
Score = 34.3 bits (75), Expect = 0.085
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Frame = +3
Query: 159 DCAVCLQKCQ----H-PTKLSCGHVFCFLCVKGVAHQAENVQCVAQKF 287
+C +C + + H P LSCGH +C +C++ +A NV + F
Sbjct: 18 ECKICYKNYETSGDHCPRVLSCGHTYCEICIQELASLRNNVHWILTSF 65
>AC199170-5|ABO33263.1| 95|Caenorhabditis elegans Hypothetical
protein T08D2.4 protein.
Length = 95
Score = 33.1 bits (72), Expect = 0.20
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 4/35 (11%)
Frame = +3
Query: 147 NMEYDCAVCLQKCQ---H-PTKLSCGHVFCFLCVK 239
NM+ C++C+++ H P L CGH FC +C++
Sbjct: 21 NMKPTCSICMEEFDANSHIPKVLICGHSFCIICIE 55
>AF101310-1|AAC69216.2| 765|Caenorhabditis elegans Hypothetical
protein C39F7.2 protein.
Length = 765
Score = 32.7 bits (71), Expect = 0.26
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 153 EYDCAVCLQKCQHPTKLSCGHVFCFLCVKGVAHQ 254
E C +C++ + P L+CGH C +C AHQ
Sbjct: 4 ELKCTICIRFFEDPIILTCGHSLCRMCAL-KAHQ 36
>AF067623-4|AAC17556.2| 393|Caenorhabditis elegans Hypothetical
protein T26C12.3 protein.
Length = 393
Score = 32.7 bits (71), Expect = 0.26
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +3
Query: 162 CAVCLQKCQHPTKLSCGHVFCFLC 233
C CLQ + P L CGH C +C
Sbjct: 110 CPHCLQIFEQPISLQCGHSLCLIC 133
>U97193-14|AAB52442.2| 381|Caenorhabditis elegans Ring finger
protein protein 1 protein.
Length = 381
Score = 32.3 bits (70), Expect = 0.34
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 4/32 (12%)
Frame = +3
Query: 162 CAVCLQKCQHPTKLS----CGHVFCFLCVKGV 245
C VC Q TKL+ CGH FC C++ V
Sbjct: 22 CQVCYQPFNETTKLARSLHCGHTFCTECIRNV 53
>Z46787-7|CAA86745.1| 235|Caenorhabditis elegans Hypothetical
protein C16C10.7 protein.
Length = 235
Score = 31.1 bits (67), Expect = 0.79
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +3
Query: 156 YDCAVCLQKCQHPTKLSCGHVFCFLCV 236
++C +CL + CGH+FC+ C+
Sbjct: 24 FECNICLDAAKDAVVSLCGHLFCWPCL 50
>L26987-1|AAA62312.1| 627|Caenorhabditis elegans par-2 protein.
Length = 627
Score = 31.1 bits (67), Expect = 0.79
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +3
Query: 162 CAVCLQKCQHPTKLSCGHVFCFLCVKGVAHQAENVQCVAQK 284
C +C Q P ++CGH +C C++ H + CV K
Sbjct: 56 CPLCDQLFDRPVMVTCGHSYCEPCIE--RHTRDTRACVICK 94
>AF106580-2|AAK71369.1| 439|Caenorhabditis elegans Abnormal
embryonic partitioningof cytoplasm protein 2, isoform a
protein.
Length = 439
Score = 31.1 bits (67), Expect = 0.79
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +3
Query: 162 CAVCLQKCQHPTKLSCGHVFCFLCVKGVAHQAENVQCVAQK 284
C +C Q P ++CGH +C C++ H + CV K
Sbjct: 56 CPLCDQLFDRPVMVTCGHSYCEPCIE--RHTRDTRACVICK 94
>AF099919-6|AAC68803.1| 261|Caenorhabditis elegans Hypothetical
protein F40G9.14 protein.
Length = 261
Score = 31.1 bits (67), Expect = 0.79
Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
Frame = +3
Query: 159 DCAVCLQKCQ-----HPTKLSCGHVFCFLCVKGVAHQAENVQC 272
+C +C +K + P +CGH +C C++ HQ + ++C
Sbjct: 137 ECKICFEKYEVTGNRSPRVFNCGHTYCESCIQVCKHQFQ-IKC 178
>Z78413-3|CAB01659.1| 202|Caenorhabditis elegans Hypothetical
protein T01C3.3 protein.
Length = 202
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
Frame = +3
Query: 159 DCAVCLQKCQHPTKL----SCGHVFCFLCVKGVAHQA 257
+C VC QK T++ CGH C C+ + A
Sbjct: 132 ECLVCYQKFDENTRIPRVMDCGHTLCDFCINQIVKMA 168
>U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform d protein.
Length = 2350
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -1
Query: 320 PIEQGFQSSLKEFLCDTLHIFCLMSYTLHTKKTE 219
P G +S+ EF C T SYT+H KK+E
Sbjct: 29 PESPGSRSNYGEFYCPTTDSLKTYSYTIHMKKSE 62
>U23511-12|AAC46798.2| 610|Caenorhabditis elegans Hypothetical
protein C32D5.10 protein.
Length = 610
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +3
Query: 153 EYDCAVCLQKCQHPTKLS-CGHVFCFLCVKG 242
E +C+VC + T LS C H FC+ C+ G
Sbjct: 38 EEECSVCKNEIIDTTSLSDCCHEFCYDCIVG 68
>U97193-12|AAB52441.1| 283|Caenorhabditis elegans Hypothetical
protein C06A5.8a protein.
Length = 283
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 4/30 (13%)
Frame = +3
Query: 162 CAVCLQKCQHPTKLS----CGHVFCFLCVK 239
C VC TKL+ CGH FC C+K
Sbjct: 38 CQVCCTNYNETTKLARGLHCGHTFCTECIK 67
>Z70208-5|CAA94134.1| 201|Caenorhabditis elegans Hypothetical
protein F54B11.5 protein.
Length = 201
Score = 29.1 bits (62), Expect = 3.2
Identities = 11/48 (22%), Positives = 22/48 (45%)
Frame = +3
Query: 129 VLIFSHNMEYDCAVCLQKCQHPTKLSCGHVFCFLCVKGVAHQAENVQC 272
+L + ++E +C +C++ + L C H FC C+ + C
Sbjct: 118 ILTQTSDVEGNCVICMENI-NDLLLPCLHAFCIRCIANEMEYRHDFSC 164
>Z74035-3|CAA98481.1| 808|Caenorhabditis elegans Hypothetical
protein F47G9.4 protein.
Length = 808
Score = 28.7 bits (61), Expect = 4.2
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = +3
Query: 162 CAVCLQKCQHPTKLSCGHVFCFLCVKG 242
C +C + + P LSC H C C G
Sbjct: 8 CTICKNEFEEPILLSCQHTTCRKCSTG 34
>Z69883-1|CAA93743.1| 829|Caenorhabditis elegans Hypothetical
protein C27C12.7 protein.
Length = 829
Score = 28.7 bits (61), Expect = 4.2
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Frame = -1
Query: 698 GYYNFSFCIIMIF---VDIIFSFIFYFNWHLINIGSYTGYS 585
GY+ S C++ I V +FS IF F + IN+ S G++
Sbjct: 21 GYFARSCCVVFILIICVIFVFSVIFTFMQNPINLNSDNGFN 61
>AL031635-7|CAB54384.2| 487|Caenorhabditis elegans Hypothetical
protein Y47D3B.11 protein.
Length = 487
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Frame = +3
Query: 141 SHNMEYDCAVCLQKCQHPTKLS---CGHVFCFLCV 236
SH+ + C +CL++ + T+L CGH F CV
Sbjct: 310 SHSAQERCVICLEEYEEGTELRVLFCGHEFHPKCV 344
>AC024791-32|AAY55887.1| 212|Caenorhabditis elegans Hypothetical
protein Y47G6A.31 protein.
Length = 212
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 5/31 (16%)
Frame = +3
Query: 159 DCAVCL---QKCQHPTKL--SCGHVFCFLCV 236
+C++C QH KL +CGH FC+ C+
Sbjct: 33 ECSICFFDFDDFQHLPKLLENCGHTFCYSCL 63
>Z68104-2|CAA92113.1| 359|Caenorhabditis elegans Hypothetical
protein F08B12.2 protein.
Length = 359
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +3
Query: 162 CAVCLQKCQHPTKLSC-GHVFCFLCV 236
C +CL+K + T L G+VFC+ C+
Sbjct: 307 CPICLKKRVNDTALFVSGYVFCYTCI 332
>Z46787-5|CAA86743.1| 409|Caenorhabditis elegans Hypothetical
protein C16C10.5 protein.
Length = 409
Score = 28.3 bits (60), Expect = 5.6
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +3
Query: 198 KLSCGHVFCFLCVKG 242
KLSCGHVF C++G
Sbjct: 330 KLSCGHVFHEFCIRG 344
>U61944-5|AAB03121.2| 482|Caenorhabditis elegans Hypothetical
protein T12E12.1 protein.
Length = 482
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Frame = +3
Query: 162 CAVCLQK---CQHPTKLSCGHVFCFLCV-KGVAHQAENVQCVAQK 284
C C++K C H C H FC++C +H +E +C K
Sbjct: 290 CHSCIEKAGGCNHIQCTRCRHHFCWMCFGDWKSHGSEYYECSRYK 334
>AF098987-7|AAC67430.1| 310|Caenorhabditis elegans Forkhead
transcription factor familyprotein 8 protein.
Length = 310
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +2
Query: 368 FQWYYEGRNGWWKYDERSNSELENAFNNGE 457
FQ+Y E RN WK R N L F+ E
Sbjct: 90 FQFYRENRNSSWKNSIRHNLSLNKQFSRIE 119
>Z80215-7|CAB02274.1| 674|Caenorhabditis elegans Hypothetical
protein C36B1.9 protein.
Length = 674
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/38 (34%), Positives = 16/38 (42%), Gaps = 4/38 (10%)
Frame = +3
Query: 162 CAVCLQKCQHPTK----LSCGHVFCFLCVKGVAHQAEN 263
C VC + + L CGH FC CV G + N
Sbjct: 63 CRVCYDEYHSSSNQARVLQCGHTFCTRCVVGCSSTMNN 100
>U64601-2|AAQ82847.1| 592|Caenorhabditis elegans Temporarily
assigned gene nameprotein 126, isoform b protein.
Length = 592
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = -3
Query: 570 GGYSFAPAAASMITSTELSHCWKSTMYKVPASSKVHSDSPL 448
G S + + ITST ++ W ++ +P + + S+SPL
Sbjct: 45 GSVSLPSSTTATITSTTVTPVWVASKNSIPFADTLGSNSPL 85
>U64601-1|AAB04573.2| 564|Caenorhabditis elegans Temporarily
assigned gene nameprotein 126, isoform a protein.
Length = 564
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = -3
Query: 570 GGYSFAPAAASMITSTELSHCWKSTMYKVPASSKVHSDSPL 448
G S + + ITST ++ W ++ +P + + S+SPL
Sbjct: 17 GSVSLPSSTTATITSTTVTPVWVASKNSIPFADTLGSNSPL 57
>U41026-1|AAM51522.2| 101|Caenorhabditis elegans Hypothetical
protein C28G1.5 protein.
Length = 101
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 6/43 (13%)
Frame = +3
Query: 162 CAVCLQK-----CQH-PTKLSCGHVFCFLCVKGVAHQAENVQC 272
C +C + +H P L+CGH C C+ + + + V+C
Sbjct: 6 CKICFDRFSDTDSEHIPRNLTCGHALCHKCITAMVNNS-TVEC 47
>AF067611-1|AAC19182.1| 603|Caenorhabditis elegans Hypothetical
protein C45G7.4 protein.
Length = 603
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/29 (41%), Positives = 14/29 (48%), Gaps = 4/29 (13%)
Frame = +3
Query: 162 CAVCLQKCQH----PTKLSCGHVFCFLCV 236
C VC + H P L CGH FC C+
Sbjct: 24 CEVCFEVFNHENRPPKLLPCGHNFCESCI 52
>AF016665-9|AAC71177.1| 363|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 166 protein.
Length = 363
Score = 27.9 bits (59), Expect = 7.4
Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
Frame = +2
Query: 149 YGI*LCCLLAKMSTSNKTILRSCFLFSLCEGC---SSSSRKCAMCRTEIPLDYFENPVLL 319
YG+ L C KM ++ + E C +RKC CR + L+ NP L
Sbjct: 23 YGV-LSCDACKMFFKRTYLMEKYYTCRRQESCYNMDGGNRKCKACRFKKCLEVGMNPELF 81
Query: 320 DKSNLQ 337
+S Q
Sbjct: 82 SRSESQ 87
>Z72509-6|CAA96650.1| 223|Caenorhabditis elegans Hypothetical
protein F32G8.6 protein.
Length = 223
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/36 (27%), Positives = 21/36 (58%)
Frame = -3
Query: 255 LDELHPSHKENRKHDRRIVLLDVDIFASKQHSHIPY 148
LDEL + HD +++ D+++F+ +H +P+
Sbjct: 85 LDELLNEAVFDEDHDEMVIVKDIEMFSLCEHHLVPF 120
>U21310-4|AAA62518.1| 165|Caenorhabditis elegans Hypothetical
protein F40H6.1 protein.
Length = 165
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +2
Query: 311 VLLDKSNLQYAANVDGVEGFQWYYEGRNGWWKY 409
+LLD S + Y A V GV GF W+ NG+ ++
Sbjct: 66 ILLDVSLIAYLA-VLGVLGFIWWQVSNNGYTQF 97
>AL021487-5|CAA16350.1| 244|Caenorhabditis elegans Hypothetical
protein Y45F10B.9 protein.
Length = 244
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
Frame = +3
Query: 159 DCAVCL----QKCQHPTKLSCGHVFCFLCVKGVAHQA 257
+C +C + + P + CGH C CV + Q+
Sbjct: 175 ECTICYLSYDNEARVPRVMKCGHTICHTCVDRIIEQS 211
>AL021487-4|CAA16351.1| 244|Caenorhabditis elegans Hypothetical
protein Y45F10B.8 protein.
Length = 244
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
Frame = +3
Query: 159 DCAVCL----QKCQHPTKLSCGHVFCFLCVKGVAHQA 257
+C +C + + P + CGH C CV + Q+
Sbjct: 175 ECTICYLSYDNEARVPRVMKCGHTICHTCVDRIIEQS 211
>AF067942-10|AAG45578.2| 358|Caenorhabditis elegans Hypothetical
protein ZK6.1 protein.
Length = 358
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +2
Query: 206 LRSCFLFSLCEGCSSSSRKCAMCR 277
++ CFL C S +RKCA CR
Sbjct: 42 IKKCFLGEYCFERSPYTRKCAACR 65
>AC026301-1|AAK68897.1| 280|Caenorhabditis elegans Hypothetical
protein Y54F10BM.6 protein.
Length = 280
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
Frame = +3
Query: 162 CAVCLQKC-----QHPTKLSCGHVFCFLCVKGVAHQAENV 266
C +CL + P ++CGH +C C++ A Q + +
Sbjct: 65 CGICLAQYWSTGDMAPRVMNCGHTYCGSCIEIFAEQKDGM 104
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,230,735
Number of Sequences: 27780
Number of extensions: 364868
Number of successful extensions: 1233
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 1139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1232
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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