Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0053.Seq
         (655 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    29   0.033
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    23   2.9  
AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII pr...    23   2.9  
AJ850297-1|CAH64517.1|  539|Tribolium castaneum putative esteras...    22   5.1  
AJ850295-1|CAH64515.1|  539|Tribolium castaneum putative esteras...    22   5.1  
AJ850294-1|CAH64514.1|  539|Tribolium castaneum putative esteras...    22   5.1  
AJ850293-1|CAH64513.1|  539|Tribolium castaneum putative esteras...    22   5.1  
AJ850292-1|CAH64512.1|  539|Tribolium castaneum putative esteras...    22   5.1  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 29.1 bits (62), Expect = 0.033
 Identities = 9/44 (20%), Positives = 24/44 (54%)
 Frame = +2

Query: 518  MPPPTLRYEL*GLTYSYNGWVTLQTENALLLHGRNKRGGGTYPC 649
            +PPP + +++ G+ ++ +  +  Q + +L +   ++   G Y C
Sbjct: 1333 LPPPVITWKIKGVQFTTSDKIRQQPDGSLFIRDVSRNNAGEYSC 1376


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 372 ASTWPSS*PARRL*TYVSVAVHSH 443
           +S+  S+ PA R+  YVS A H H
Sbjct: 48  SSSSASTSPAARMYPYVSAAHHHH 71


>AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII
           protein.
          Length = 209

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 372 ASTWPSS*PARRL*TYVSVAVHSH 443
           +S+  S+ PA R+  YVS A H H
Sbjct: 48  SSSSASTSPAARMYPYVSAAHHHH 71


>AJ850297-1|CAH64517.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +1

Query: 583 PSNRERITASRQK*AGWWYLPLS 651
           P+ +  +T  R +   WWYLP +
Sbjct: 262 PARQIALTVPRYQ--AWWYLPFA 282


>AJ850295-1|CAH64515.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +1

Query: 583 PSNRERITASRQK*AGWWYLPLS 651
           P+ +  +T  R +   WWYLP +
Sbjct: 262 PARQIALTVPRYQ--AWWYLPFA 282


>AJ850294-1|CAH64514.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +1

Query: 583 PSNRERITASRQK*AGWWYLPLS 651
           P+ +  +T  R +   WWYLP +
Sbjct: 262 PARQIALTVPRYQ--AWWYLPFA 282


>AJ850293-1|CAH64513.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +1

Query: 583 PSNRERITASRQK*AGWWYLPLS 651
           P+ +  +T  R +   WWYLP +
Sbjct: 262 PARQIALTVPRYQ--AWWYLPFA 282


>AJ850292-1|CAH64512.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +1

Query: 583 PSNRERITASRQK*AGWWYLPLS 651
           P+ +  +T  R +   WWYLP +
Sbjct: 262 PARQIALTVPRYQ--AWWYLPFA 282


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,217
Number of Sequences: 336
Number of extensions: 2555
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16865010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)