Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0053.Seq
         (655 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          24   1.1  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      24   1.1  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   4.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   4.5  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   6.0  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +3

Query: 435 HSHSRHERPYNK 470
           HS+  H++PYNK
Sbjct: 430 HSYKMHQKPYNK 441


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +3

Query: 435 HSHSRHERPYNK 470
           HS+  H++PYNK
Sbjct: 430 HSYKMHQKPYNK 441


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +2

Query: 575  WVTLQTENALLLHGRNKRGGG 637
            +VT  T +++LLH ++   GG
Sbjct: 1411 YVTSSTSSSILLHWKSGHNGG 1431


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +2

Query: 575  WVTLQTENALLLHGRNKRGGG 637
            +VT  T +++LLH ++   GG
Sbjct: 1407 YVTSSTSSSILLHWKSGHNGG 1427


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = -3

Query: 302 VLSTGGYKLSNVGYSIFTLNTMQASGTGGP 213
           VLS   Y +SN+ +    L      G G P
Sbjct: 500 VLSMSDYDISNIEHEALLLVITSTFGNGDP 529


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,018
Number of Sequences: 438
Number of extensions: 3295
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)