Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0050.Seq
         (761 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0431 + 3141995-3142058,3142178-3142241,3142376-3142465,314...    29   5.3  

>02_01_0431 +
           3141995-3142058,3142178-3142241,3142376-3142465,
           3142669-3142745,3142898-3142968,3143581-3143634,
           3143731-3143817
          Length = 168

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = -3

Query: 297 RNFGFYLGENPSISFNNVENDH*DTFVDKIGFTFLYIHHVFVQCNSHYETR 145
           RN  +YL   PS      +N H   FVD++   F    H+ V CN+   +R
Sbjct: 87  RNISYYLSVTPS---GKEKNPH---FVDEVASLFGKDEHLIVACNTGVRSR 131


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,081,699
Number of Sequences: 37544
Number of extensions: 278628
Number of successful extensions: 427
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 427
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)