Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0046.Seq
         (760 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyce...    29   0.95 
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo...    28   1.3  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    27   2.9  
SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter Atm1|S...    26   6.7  
SPBC215.01 ||SPBC3B9.20|GTPase activating protein|Schizosaccharo...    25   8.9  

>SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 481

 Score = 28.7 bits (61), Expect = 0.95
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +2

Query: 485 YSYGEPIPTVSAMTLTLLSFWCPYAASRIAS 577
           Y + EP+P++S++ L +L     YAA R +S
Sbjct: 131 YLFSEPLPSISSLDLDVLRLTARYAAVRGSS 161


>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
           Sap49|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 18/50 (36%), Positives = 29/50 (58%)
 Frame = +3

Query: 195 PTSRSVTRLVTYPDVPHHVVGSGSAHPWSSVSWTESLTDAAQHWPYLPSM 344
           P + + T +   P+VP  +VG+ +A P  S+      T AAQH+P +P+M
Sbjct: 228 PATIAATSIPPVPNVP--LVGATTAVPPLSIPNVLPFT-AAQHFPGMPAM 274


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
 Frame = +2

Query: 557 AASRIASTIFP--SITSQPRSSLDAATSRACTTPVRRPSPTVATLQGAQHQG*REPALVL 730
           A ++  ST+ P  S T+ P+ S  A  + A     +   PT A  Q A  +   EPA+  
Sbjct: 421 AETQDKSTVVPQESATATPKRSPSATPTSALPPIGKFAPPTTAKAQPAPEKRRGEPAVQT 480

Query: 731 REEQARGR 754
           R    R R
Sbjct: 481 RNHSKRTR 488


>SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter
           Atm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 693

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 15/68 (22%), Positives = 32/68 (47%)
 Frame = +2

Query: 437 VVPRAKSLAPLDTIYSYSYGEPIPTVSAMTLTLLSFWCPYAASRIASTIFPSITSQPRSS 616
           ++P    +A +  I +Y YG     ++A T+ L      YA   + +T + ++  +  ++
Sbjct: 244 IIPITLEIAMVSGILTYKYGPSFSAIAATTVAL------YALFTVRTTSWRTVFRRQANA 297

Query: 617 LDAATSRA 640
            D+  S A
Sbjct: 298 ADSKASAA 305


>SPBC215.01 ||SPBC3B9.20|GTPase activating
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 18/51 (35%), Positives = 27/51 (52%)
 Frame = -1

Query: 439 HRASPVDQSRSVGANSTGLIFESLGCFGAQEVIDGRYGQCWAASVSDSVQL 287
           H +S   ++RSVGANS   I  SL  F    +  G   Q ++  ++DS+ L
Sbjct: 688 HMSSTGSENRSVGANSD--IKVSLPTFRMVVLSIGLLEQLFSGGLADSIVL 736


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,904,712
Number of Sequences: 5004
Number of extensions: 56352
Number of successful extensions: 175
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)