Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0046.Seq
         (760 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0285 - 16828173-16828661                                         34   0.14 
12_02_0284 - 16791153-16791212,16791392-16791925,16792266-167926...    34   0.14 
06_01_1103 + 9085156-9085602                                           33   0.33 
12_02_0634 + 21416205-21416954                                         31   0.75 
03_05_0257 + 22439915-22440275,22440280-22440627,22440962-224410...    29   3.0  
12_01_0598 + 4890006-4890290,4890901-4890987                           29   4.0  
05_06_0118 + 25735966-25737601,25737698-25738488                       29   4.0  
06_03_0147 + 17236158-17236808                                         29   5.3  
02_04_0533 + 23719353-23719910,23720012-23720418,23720690-23721023     28   9.3  

>12_02_0285 - 16828173-16828661
          Length = 162

 Score = 33.9 bits (74), Expect = 0.14
 Identities = 22/62 (35%), Positives = 30/62 (48%)
 Frame = -2

Query: 210 PTEMSDGKSVQPARASARNRCTGYDSTGAETIGSTLKTEAASRCRWTCRADASCRSHSRI 31
           P EMS  + V+PARA+   RC     +G E +   ++  + SR RW  R  A CR     
Sbjct: 37  PEEMSTRRKVRPARATVFRRC-----SGEEEVMPGMRAASWSRGRWWRRRPA-CRQGDGG 90

Query: 30  PW 25
            W
Sbjct: 91  DW 92


>12_02_0284 -
           16791153-16791212,16791392-16791925,16792266-16792637,
           16793754-16794105,16794107-16794795,16821179-16821574
          Length = 800

 Score = 33.9 bits (74), Expect = 0.14
 Identities = 22/62 (35%), Positives = 30/62 (48%)
 Frame = -2

Query: 210 PTEMSDGKSVQPARASARNRCTGYDSTGAETIGSTLKTEAASRCRWTCRADASCRSHSRI 31
           P EMS  + V+PARA+   RC     +G E +   ++  + SR RW  R  A CR     
Sbjct: 37  PEEMSTRRKVRPARATVFRRC-----SGEEEVMPGMRAASWSRGRWWRRRPA-CRQGDGG 90

Query: 30  PW 25
            W
Sbjct: 91  DW 92


>06_01_1103 + 9085156-9085602
          Length = 148

 Score = 32.7 bits (71), Expect = 0.33
 Identities = 22/62 (35%), Positives = 30/62 (48%)
 Frame = -2

Query: 210 PTEMSDGKSVQPARASARNRCTGYDSTGAETIGSTLKTEAASRCRWTCRADASCRSHSRI 31
           P EMS  + V+PARA+   RC     +G E +   ++  + SR RW  R  A  R   R 
Sbjct: 68  PEEMSTRRKVRPARATVFRRC-----SGEEEVIPGMRAASRSRGRWWRRRPA-LRQGDRG 121

Query: 30  PW 25
            W
Sbjct: 122 GW 123


>12_02_0634 + 21416205-21416954
          Length = 249

 Score = 31.5 bits (68), Expect = 0.75
 Identities = 19/52 (36%), Positives = 27/52 (51%)
 Frame = -2

Query: 210 PTEMSDGKSVQPARASARNRCTGYDSTGAETIGSTLKTEAASRCRWTCRADA 55
           P EMS  + V+PARA+   RC     +G E +   ++  + SR RW  R  A
Sbjct: 69  PEEMSTRRKVRPARATVFRRC-----SGEEEVIPGMRAASWSRGRWWRRRPA 115


>03_05_0257 +
           22439915-22440275,22440280-22440627,22440962-22441015,
           22441390-22441763
          Length = 378

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = -3

Query: 452 WRAAPQSEPGGSKPQCRREFDGSHLRKSWLLRS 354
           WR  P   P    P+ RRE DG   R+ W  RS
Sbjct: 11  WRPVPHEAPPLPLPRLRRE-DGQEKRRRWPFRS 42


>12_01_0598 + 4890006-4890290,4890901-4890987
          Length = 123

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -3

Query: 494 RMNMSRWCRVVLMTWR-AAPQSEPGGSKPQCRREFDGSHLR 375
           R+++      VL +WR  A +  PGGS+P    E  G+  R
Sbjct: 47  RLDVDERMGTVLASWRKTAGRGRPGGSRPAAEAEIQGADPR 87


>05_06_0118 + 25735966-25737601,25737698-25738488
          Length = 808

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 168 LSQAELIYRPTSRSVTRLVTYPDVPHHVVGSG 263
           ++ A  ++  T+R++TRL  Y DV H   G G
Sbjct: 149 VAPAYYVFNATTRAITRLPPYQDVIHATAGVG 180


>06_03_0147 + 17236158-17236808
          Length = 216

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +1

Query: 391 SNSRRHCGFDPPGSLCGAARQVISTTRHHL 480
           S+ +RH G   PG L  A R  + T  HHL
Sbjct: 43  SHRQRHGGMPSPGDLAAALRGRLLTEDHHL 72


>02_04_0533 + 23719353-23719910,23720012-23720418,23720690-23721023
          Length = 432

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +2

Query: 551 PYAASRIASTIFPSITSQPRSSLDAATSRACTTPVRRPSP-TVATLQGAQ 697
           P   S  A+T  P + +     ++A      T PV RPSP  + T QG +
Sbjct: 133 PVVTSNSATTTRPQLCAPYDDDIEATLRAMETNPVERPSPYFLETTQGGR 182


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,086,547
Number of Sequences: 37544
Number of extensions: 457901
Number of successful extensions: 1636
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1635
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)