Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0046.Seq
         (760 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    25   0.58 
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     25   0.58 
AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.          24   1.8  
AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.          24   1.8  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   2.4  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    23   4.1  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    23   4.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   7.2  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   9.5  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 25.4 bits (53), Expect = 0.58
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +1

Query: 457 ISTTRHHLLIFIRRTDPDRFSNDAYIAKLLVPLRSVADSIH 579
           + TTRH+   ++   DPD      Y+ + +V  RS+ D  H
Sbjct: 309 VFTTRHNATCYLSHVDPDVVQYFGYLPQDMVG-RSLFDFYH 348


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 25.4 bits (53), Expect = 0.58
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +1

Query: 457 ISTTRHHLLIFIRRTDPDRFSNDAYIAKLLVPLRSVADSIH 579
           + TTRH+   ++   DPD      Y+ + +V  RS+ D  H
Sbjct: 15  VFTTRHNATCYLSHVDPDVVQYFGYLPQDMVG-RSLFDFYH 54


>AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.
          Length = 148

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +2

Query: 512 VSAMTLTLLSFWCPYAASRIASTIF 586
           V+ M    L  W PYAA  IA+  F
Sbjct: 113 VALMITAFLLAWSPYAALAIAAQYF 137


>AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.
          Length = 88

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = -3

Query: 728 KREQVHVILDAELLVKWLRLEKAFLPE*CTHAR 630
           K  +V +++  +L   W+ ++ +FLPE  T +R
Sbjct: 52  KWSKVCIVVRRKLEENWIHVDISFLPEKSTSSR 84


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +3

Query: 255 GSGSAHPWSSVSWTESLTDAA 317
           G  S+H   S SWT+   DAA
Sbjct: 399 GQSSSHHHGSKSWTQEDMDAA 419


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 446 RAKSLAPLDTIYSYSYGEPIPTV 514
           RA+     +  ++Y YG+ IPTV
Sbjct: 208 RARRKFIAEIAFAYRYGDAIPTV 230


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -3

Query: 506 GSVRRMNMSRWCRVVLMTWRAAPQSEP 426
           G VR + + +  R+VL+ ++   +SEP
Sbjct: 311 GIVRSLVLDKLARIVLLNFQEERRSEP 337


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +3

Query: 276 WSSVSWTESLTDAAQHWPYLPSMTSCAPKQPRLSKM 383
           +S    +ESLT  A H  Y    +SC P    L ++
Sbjct: 54  YSGTRSSESLTAQAHHRLYPAFSSSCDPVPGNLEQI 89


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -3

Query: 488 NMSRWCRVVLMTW 450
           NMS W R V + W
Sbjct: 345 NMSPWVRQVFLNW 357


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,847
Number of Sequences: 438
Number of extensions: 4524
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)