Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0045.Seq
(677 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 42 8e-05
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 40 3e-04
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ... 32 0.066
SPBC9B6.09c |mdl1||mitochondrial peptide-transporting ATPase|Sch... 32 0.066
SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc... 32 0.088
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe... 31 0.15
SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr... 30 0.35
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ... 29 0.47
SPCC11E10.04 |||mitochondrial ATPase expression protein homolog|... 29 0.82
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|... 28 1.1
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 28 1.4
SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protei... 28 1.4
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|... 27 1.9
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 27 2.5
SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr... 27 3.3
SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family |Schizosa... 27 3.3
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 27 3.3
SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr... 26 4.4
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 26 5.8
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 25 7.6
SPAC22F3.12c |rgs1||regulator of G-protein signaling Rgs1|Schizo... 25 7.6
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 41.9 bits (94), Expect = 8e-05
Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 6/82 (7%)
Frame = -2
Query: 493 RNIAMVFQNYALYPHMTVYDNMAFGLKMQKIAKEVID--ERVNWAAQILGL----REYLK 332
+ IA+V Q LY TV +N+ G +E+I+ ++ N ILGL
Sbjct: 1195 KQIALVSQEPTLYQG-TVRENIVLGASKDVSEEEMIEACKKANIHEFILGLPNGYNTLCG 1253
Query: 331 RKPGALSGGQRQRVALGRAIVR 266
+K +LSGGQ+QR+A+ RA++R
Sbjct: 1254 QKGSSLSGGQKQRIAIARALIR 1275
Score = 37.1 bits (82), Expect = 0.002
Identities = 28/95 (29%), Positives = 51/95 (53%), Gaps = 15/95 (15%)
Frame = -2
Query: 502 AKARN-IAMVFQNYALYPHMTVYDNMAFGLK---MQKIAKEVIDERVNWAAQILGLREYL 335
A RN I++V Q L+ TV++N+ +GL ++KE ++ RV AA++ +++
Sbjct: 492 ASLRNQISLVQQEPVLFA-TTVFENITYGLPDTIKGTLSKEELERRVYDAAKLANAYDFI 550
Query: 334 KRKPGA-----------LSGGQRQRVALGRAIVRE 263
P +SGGQ+QR+A+ RA++ +
Sbjct: 551 MTLPEQFSTNVGQRGFLMSGGQKQRIAIARAVISD 585
Score = 34.7 bits (76), Expect = 0.012
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = -1
Query: 653 GLQLEIADKEFIVFVARSGCGKSTT 579
GL L + +F+ FV SGCGKSTT
Sbjct: 1139 GLNLTVKPGQFVAFVGSSGCGKSTT 1163
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 40.3 bits (90), Expect = 3e-04
Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Frame = -1
Query: 287 AWAGDCTRSGRFL-MDEPLSNLDAKLRVQMRAEISKLHQKLNTTMIYVTHDQTEAMTMAT 111
A+A R+ R L +DE S LD+K + + I Q L+ T++ +TH Q M +A
Sbjct: 1245 AFARALLRNPRLLILDECTSALDSKSSLLLEKTI----QNLSCTVLIITH-QPSLMKLAD 1299
Query: 110 RIVIMKDGIVQQVGAPKTVYNQ 45
RI++M GIV++ G+ + N+
Sbjct: 1300 RIIVMDSGIVKESGSFDELMNR 1321
Score = 33.1 bits (72), Expect = 0.038
Identities = 13/25 (52%), Positives = 20/25 (80%)
Frame = -2
Query: 328 KPGALSGGQRQRVALGRAIVREAGV 254
K +LSGGQ+QR+AL RA++R+ +
Sbjct: 567 KEASLSGGQQQRIALARALLRDTEI 591
>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1427
Score = 32.3 bits (70), Expect = 0.066
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = -2
Query: 340 YLKRKPGALSGGQRQRVALGRAIVREAGVF 251
Y+ +LSGGQ+QRV+L RA+ A V+
Sbjct: 699 YIHSNGSSLSGGQKQRVSLARALYSNAEVY 728
Score = 29.5 bits (63), Expect = 0.47
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = -1
Query: 656 EGLQLEIADKEFIVFVARSGCGKST 582
E + LEI KE I V R+G GKST
Sbjct: 1198 EDINLEILPKEKIAIVGRTGSGKST 1222
>SPBC9B6.09c |mdl1||mitochondrial peptide-transporting
ATPase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 726
Score = 32.3 bits (70), Expect = 0.066
Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 6/66 (9%)
Frame = -2
Query: 445 TVYDNMAFGLKMQKIAKEVID--ERVNWAAQILGLREYLKRKPGA----LSGGQRQRVAL 284
T+ +N+A+G K +E+ D +R N + +L E + G LSGGQ+QR+A+
Sbjct: 573 TIGENIAYG-KSNASQEEIEDAAKRAN-CSFVLSFPEKWSTQVGTRGLQLSGGQKQRIAI 630
Query: 283 GRAIVR 266
RA++R
Sbjct: 631 ARALLR 636
>SPCP1E11.04c |pal1||membrane associated protein Pal1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 425
Score = 31.9 bits (69), Expect = 0.088
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = +2
Query: 506 NSFIRLPSINRSPPLISSSPAIMRRWSTYRSPNGRQTR 619
NS IR +NRS ++S +P + R S YRS + TR
Sbjct: 300 NSLIRKLGLNRSASMMSRTPNTLNRPSNYRSHSSMGTR 337
>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1465
Score = 31.1 bits (67), Expect = 0.15
Identities = 12/27 (44%), Positives = 20/27 (74%)
Frame = -2
Query: 331 RKPGALSGGQRQRVALGRAIVREAGVF 251
+K +LSGGQ+ R++L RAI +A ++
Sbjct: 699 QKGASLSGGQKSRISLARAIYSQADIY 725
Score = 25.8 bits (54), Expect = 5.8
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -1
Query: 650 LQLEIADKEFIVFVARSGCGKST 582
+ +EI+ +E I V R+G GKST
Sbjct: 1246 INIEISPREKIGIVGRTGAGKST 1268
>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 593
Score = 29.9 bits (64), Expect = 0.35
Identities = 15/54 (27%), Positives = 27/54 (50%)
Frame = -1
Query: 254 FLMDEPLSNLDAKLRVQMRAEISKLHQKLNTTMIYVTHDQTEAMTMATRIVIMK 93
+L+DEP + LD++ R+ I + T V HD A +A R+++ +
Sbjct: 477 YLIDEPSAYLDSEQRIIASKVIRRFIVNSRKTAFIVEHDFIMATYLADRVILFE 530
>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
membrane transporter Hmt1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 830
Score = 29.5 bits (63), Expect = 0.47
Identities = 11/21 (52%), Positives = 18/21 (85%)
Frame = -2
Query: 316 LSGGQRQRVALGRAIVREAGV 254
LSGG++QRVA+ RAI+++ +
Sbjct: 721 LSGGEKQRVAVARAILKDPSI 741
>SPCC11E10.04 |||mitochondrial ATPase expression protein
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 443
Score = 28.7 bits (61), Expect = 0.82
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -2
Query: 487 IAMVFQNYALYPHMTVYDNMAFGLKMQKIAKEVID 383
I + F NY L P+ T YD + GL +E+ D
Sbjct: 208 IEVDFPNYDLVPNSTTYDYLMVGLSRDGKIREIYD 242
>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
Abc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1469
Score = 28.3 bits (60), Expect = 1.1
Identities = 11/15 (73%), Positives = 14/15 (93%)
Frame = -2
Query: 316 LSGGQRQRVALGRAI 272
LSGGQ+QR+AL RA+
Sbjct: 740 LSGGQKQRIALARAV 754
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 27.9 bits (59), Expect = 1.4
Identities = 12/45 (26%), Positives = 27/45 (60%)
Frame = -2
Query: 478 VFQNYALYPHMTVYDNMAFGLKMQKIAKEVIDERVNWAAQILGLR 344
+++N L T++ N FG ++Q+ K ++DER++ + + G +
Sbjct: 326 LYKNIVLSGGSTLFKN--FGNRLQRDLKRIVDERIHRSEMLSGAK 368
>SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protein
Mcp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 327
Score = 27.9 bits (59), Expect = 1.4
Identities = 18/58 (31%), Positives = 30/58 (51%)
Frame = +1
Query: 199 RICTRSLASRLESGSSIKKRPLRVQSPAQAPLADVARRKAPPAYVSGTHAGREFAPPS 372
+IC ++L RLE+ SS K+ L + L ++ R +APP+Y + + P S
Sbjct: 268 QIC-QTLRKRLENDSSTTKQRL-------SKLEEIIRNRAPPSYSFSLNCSHTYQPVS 317
>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 736
Score = 27.5 bits (58), Expect = 1.9
Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Frame = +2
Query: 464 VILEHHRY--IACFGWNSFIRLPSI 532
V+ E+HR+ I C G+N F+ LP +
Sbjct: 587 VVTENHRWLHIVCEGFNCFLELPEV 611
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 27.1 bits (57), Expect = 2.5
Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Frame = -1
Query: 260 GRFLMDEPLSNLDAKLRVQMRAEISKL----HQKLNTTMIYVTHDQ 135
G +DEP +NLD + + +S++ ++ N +I +THD+
Sbjct: 1207 GILALDEPTTNLDEENICSLAKNLSRIVEFRRKQANFQLIVITHDE 1252
>SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 172
Score = 26.6 bits (56), Expect = 3.3
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -1
Query: 509 SSSQSTQYSDGVPELRVVSAYDGLRQHGVWSEDAKNRQRGD 387
+S + YS+ VPE SA SE+AKN +GD
Sbjct: 98 TSVPQSSYSNSVPEAAYGSAPPSTFASSAISEEAKNACKGD 138
>SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 618
Score = 26.6 bits (56), Expect = 3.3
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = -2
Query: 355 LGLREYLKRKPGA-LSGGQRQRVALGRAI 272
LG + + KP +SGG R RVAL RA+
Sbjct: 207 LGFTQEMMAKPTKDMSGGWRMRVALSRAL 235
>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
Abc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1463
Score = 26.6 bits (56), Expect = 3.3
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = -2
Query: 319 ALSGGQRQRVALGRAIVREAGVF 251
+LSGGQ+ R++L RA+ + ++
Sbjct: 705 SLSGGQKARISLARAVYSRSDIY 727
>SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 904
Score = 26.2 bits (55), Expect = 4.4
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -2
Query: 673 NQVHVVKDFNWKLPIKSSSCLSPVRAAV 590
N V + DF+ KL + SSS L+ VR A+
Sbjct: 630 NNVSIPDDFDSKLKLSSSSGLTCVRIAI 657
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.8 bits (54), Expect = 5.8
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -1
Query: 629 KEFIVFVARSGCGKSTTC 576
KE ++ V +GCGK+T C
Sbjct: 1186 KEPVLLVGDTGCGKTTVC 1203
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 25.4 bits (53), Expect = 7.6
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +3
Query: 3 RW*SNKSGNKHIRGLVI 53
RW SN SGN+ ++G VI
Sbjct: 37 RWNSNASGNEKVKGPVI 53
>SPAC22F3.12c |rgs1||regulator of G-protein signaling
Rgs1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 25.4 bits (53), Expect = 7.6
Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
Frame = +1
Query: 379 AHQSPLWRFFASSDQTPCCRKPS--YADTTRNSGTPSLYCVL--WLELIHSFAVDQQIAA 546
AH ++ F SS+ PS Y T + L WL+LIH ++ Q A
Sbjct: 401 AHACGIYNCFLSSNAPNAVNLPSDLYEKITNHMALAMEVEPLNEWLQLIHILLLEAQTAV 460
Query: 547 ADLL 558
DL+
Sbjct: 461 LDLM 464
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,793,495
Number of Sequences: 5004
Number of extensions: 57962
Number of successful extensions: 213
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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