Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0045.Seq
         (677 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   1.5  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   3.5  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    23   3.5  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   8.2  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 548  LISSSPAIMRRWSTYRSPNGRQTR*TLY 631
            L+ SS +I+  W     PNG  T+ T+Y
Sbjct: 1189 LVMSSESILVSWRPPSQPNGVITQYTVY 1216


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +3

Query: 81  NNPVFHNHNPRRHGHR 128
           NN   HNHN  RH  +
Sbjct: 422 NNHYNHNHNQARHSSK 437


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +3

Query: 123 HRFGLIVGHVDHGGVQFL 176
           H    I+GHVDHG    L
Sbjct: 145 HPIVTIMGHVDHGKTTLL 162


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -1

Query: 317 AFRRATSASGAWA 279
           AFR+ TSAS  W+
Sbjct: 811 AFRKFTSASDVWS 823


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,521
Number of Sequences: 438
Number of extensions: 4023
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)