Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0039.Seq
         (674 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.13 |tfb2|SPBC31F10.01|transcription factor TFIIH comple...    40   2e-04
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc...    29   0.81 
SPAC9E9.10c |cbh1|cbh|centromere binding protein |Schizosaccharo...    26   5.7  
SPAC31G5.09c |spk1||MAP kinase Spk1|Schizosaccharomyces pombe|ch...    25   7.6  
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S...    25   7.6  
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl...    25   7.6  
SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|ch...    25   10.0 

>SPBC13G1.13 |tfb2|SPBC31F10.01|transcription factor TFIIH complex
           subunit Tfb2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 447

 Score = 40.3 bits (90), Expect = 2e-04
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = +1

Query: 508 LSFLDAYALERWECVLHYMVGNAQTEGISADAVRIMLHAGL-HDQKRKRRVRR 663
           + FLDAYA E WE +LH+MVG  + +      + ++   GL    K + R+ R
Sbjct: 128 VDFLDAYAKETWETILHFMVGTPEAKFPGEGVLSLLKRGGLMSGPKNQLRITR 180



 Score = 32.3 bits (70), Expect = 0.066
 Identities = 14/24 (58%), Positives = 17/24 (70%)
 Frame = +3

Query: 180 LYNYPTICLAVYRELPELARHFVI 251
           LY  P  CLAV+R LP LAR +V+
Sbjct: 22  LYQKPAACLAVFRLLPILARQYVM 45


>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
           4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 636

 Score = 28.7 bits (61), Expect = 0.81
 Identities = 31/109 (28%), Positives = 47/109 (43%), Gaps = 1/109 (0%)
 Frame = -3

Query: 549 ALPALQRVRVQERQSRAFPSGSSDDDMLHALPPPSNDTLRFFLNDCASIQPGMPPGMGAS 370
           A+ +   V +Q +Q  + P  SS  +   A+PPPSN+  R       S +P       A+
Sbjct: 77  AVASSSNVSLQSQQPLSKPVVSSKPNQTTAMPPPSNNPSRHV--SSTSNKPAAVSPNPAA 134

Query: 369 CHTE-SSDSVVHAFACSLAYVCETQDVTTACGTGCSTNSSGLRSDVLAL 226
            H E  S SV  + + S A    T   TT    G  +N +     VL++
Sbjct: 135 HHAELPSGSVPPSASVSRANSTAT---TTPHKAGVVSNPAAANVHVLSV 180


>SPAC9E9.10c |cbh1|cbh|centromere binding protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 514

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +2

Query: 275 VPQAVVTSWVSQTYAKEQAKACTTLSEL 358
           +PQ  VT W  +TY K+ ++  +T+SE+
Sbjct: 27  IPQKEVTEWFRKTYNKDLSQ--STISEI 52


>SPAC31G5.09c |spk1||MAP kinase Spk1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 372

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 183 YNYPTICLAVYRELPELARHF 245
           +N+P  CL   RE+ +L RHF
Sbjct: 73  FNHPVFCLRTLREI-KLLRHF 92


>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 690

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 386 GGMPGWMLAQSFKKNLKVSLLGGGRA 463
           G  P W L+ S++K+L +  LGG  A
Sbjct: 355 GYTPSWALSWSYRKDLIMQELGGYNA 380


>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
           subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 709

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -1

Query: 404 SSPACPPVWAPPATRRAL 351
           S+P  PPVWAP     AL
Sbjct: 177 STPTPPPVWAPTIVSSAL 194


>SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 891

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 12/47 (25%), Positives = 23/47 (48%)
 Frame = +2

Query: 197 YMSRCISRITRASTSLRNPLLFVEQPVPQAVVTSWVSQTYAKEQAKA 337
           Y  +C+S +T   TS   P   +E P+ +    +W + T ++ +  A
Sbjct: 194 YHLQCLSPLTSFFTSCVTPKTILESPLRKQGSHNWKTSTNSQSRLAA 240


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,469,205
Number of Sequences: 5004
Number of extensions: 48458
Number of successful extensions: 144
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)