Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0039.Seq
(674 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0039 - 348800-348912,349201-349279,349513-349687,350126-35... 34 0.12
06_01_1161 - 9872947-9873800,9874187-9874331,9874628-9874681 32 0.36
03_02_0790 - 11212540-11212698,11212777-11212873,11212974-112130... 31 0.84
01_06_0707 + 31355929-31356244,31356766-31356992,31357081-313572... 31 0.84
01_05_0788 + 25223373-25223405,25224285-25224373,25224496-252246... 31 0.84
04_03_0243 - 13271384-13272865,13272987-13273248,13274617-13276067 30 1.5
06_03_0559 + 22148773-22149210,22149478-22149684,22150065-221504... 30 1.9
03_02_0007 + 4880864-4881445 30 1.9
02_04_0228 - 21083917-21084067,21084489-21084577,21084662-210847... 29 2.6
11_04_0310 + 16218439-16219383 28 7.8
09_02_0489 - 9847903-9848081,9848916-9849107,9849195-9849276,984... 28 7.8
09_02_0461 + 9577003-9577065,9577471-9577568,9578339-9578394,957... 28 7.8
09_02_0236 - 6131072-6131639,6132047-6132180 28 7.8
05_07_0260 - 28739035-28739085,28739316-28739596,28740545-287405... 28 7.8
04_01_0208 + 2596110-2596928 28 7.8
02_05_0544 + 29876337-29876524,29876850-29876882,29878390-298785... 28 7.8
>03_01_0039 -
348800-348912,349201-349279,349513-349687,350126-350232,
350294-350374,350783-351082,351178-351230,351357-351494,
351767-351917,352602-352809,352881-352939
Length = 487
Score = 33.9 bits (74), Expect = 0.12
Identities = 20/49 (40%), Positives = 26/49 (53%)
Frame = -3
Query: 498 FPSGSSDDDMLHALPPPSNDTLRFFLNDCASIQPGMPPGMGASCHTESS 352
F S DD++L LP P+ D RF L+D +S + P ASC E S
Sbjct: 69 FSQVSLDDNLLTLLPSPTRDQ-RFGLHDDSSKRMSSLPASSASCAREES 116
>06_01_1161 - 9872947-9873800,9874187-9874331,9874628-9874681
Length = 350
Score = 32.3 bits (70), Expect = 0.36
Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Frame = -3
Query: 552 HAL-PALQRVRVQERQSRAFPSGSSDDDMLHALPPPSNDTLRFFLNDCASIQPGMPPGMG 376
HA+ P V E + SGS + + AL DT RF ++ + PG
Sbjct: 260 HAINPTRVYAVVLESEEDGSGSGSGTPEKMEALAVCHLDTSRFDPKTPLFVEHNLRPGDA 319
Query: 375 ASCHTESSDSVVHA 334
+ CH S DSV+ A
Sbjct: 320 SVCHFVSRDSVIWA 333
>03_02_0790 -
11212540-11212698,11212777-11212873,11212974-11213030,
11213291-11213379,11213463-11213549,11213820-11213935,
11214026-11214281,11214361-11214510,11214948-11215106,
11215456-11215493,11215972-11216063,11216528-11216682,
11217185-11217253
Length = 507
Score = 31.1 bits (67), Expect = 0.84
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +2
Query: 293 TSWVSQTYAKEQAKACTTLSELSVWQEAPIPGGMPGWML 409
TSW+ T+ + T +S+ +W + +P G P W+L
Sbjct: 398 TSWIPITWLGKITLE-TYISQFHIWLRSKVPNGQPKWLL 435
>01_06_0707 +
31355929-31356244,31356766-31356992,31357081-31357257,
31357355-31357510,31357778-31358054,31358192-31358306,
31360349-31360634,31361196-31361381,31361663-31361833,
31362307-31362426
Length = 676
Score = 31.1 bits (67), Expect = 0.84
Identities = 18/42 (42%), Positives = 23/42 (54%)
Frame = -2
Query: 478 RRHAPRPASPKQ*HFEVLFKRLCEHPARHAPRYGRLLPHGEL 353
RRH+ RP K+ F+ L KR+ E HA R +LP G L
Sbjct: 599 RRHSGRPGGMKEETFDQLQKRIPERIIEHAVR--GMLPKGRL 638
>01_05_0788 +
25223373-25223405,25224285-25224373,25224496-25224624,
25224710-25224766,25224844-25224916,25225509-25225667,
25226755-25226904,25227013-25227268,25227358-25227479,
25227531-25227599,25227653-25227739,25227842-25227930,
25228168-25228224,25229162-25229258,25229348-25229506
Length = 541
Score = 31.1 bits (67), Expect = 0.84
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +2
Query: 293 TSWVSQTYAKEQAKACTTLSELSVWQEAPIPGGMPGWMLA 412
TSW+ T+ + T +S++ +W + +P G P W+L+
Sbjct: 432 TSWIPITWLGKITLE-TYISQIHIWLRSNMPNGQPKWLLS 470
>04_03_0243 - 13271384-13272865,13272987-13273248,13274617-13276067
Length = 1064
Score = 30.3 bits (65), Expect = 1.5
Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 4/99 (4%)
Frame = +2
Query: 287 VVTSWVSQTYAKEQAKACTTLSELSVWQEAP-IPGGMPGWMLAQSFKKNLKVSLLGGGRA 463
V+ + S Y +E A +E + +E P G +PGW++ + K+N + L R
Sbjct: 528 VLCTECSHNYERE---ASAVKAEAAADEEGPRAAGNLPGWLVPEPPKENYLIEL---KRK 581
Query: 464 WS-MSSSLEPDGKARDC--RSWTRTRWSAGSACCTTWWA 571
WS + L G C +S+ + G + WW+
Sbjct: 582 WSRLCRKLHLCGGGDPCSGQSFGAGAYGNGPSSLLPWWS 620
>06_03_0559 +
22148773-22149210,22149478-22149684,22150065-22150471,
22150655-22151472,22151564-22151674,22151846-22152015
Length = 716
Score = 29.9 bits (64), Expect = 1.9
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Frame = +2
Query: 290 VTSWVSQTYAKEQAKACTTLSELSVWQEAPIPGGMPGWMLAQSFKKNLKVSLL-GGGRAW 466
+++W +Q+ A A A + + + +AP+ G PG + +F + LL G GR
Sbjct: 9 LSTWATQSSASGPATAPSAGASFDLNSQAPVAEGFPGLGMYGAFLQGDDDELLTGHGRGS 68
Query: 467 SMSSSLEPDGKARDCRS 517
S+ P A D R+
Sbjct: 69 SLPPYRPPRAGAGDGRA 85
>03_02_0007 + 4880864-4881445
Length = 193
Score = 29.9 bits (64), Expect = 1.9
Identities = 18/53 (33%), Positives = 24/53 (45%)
Frame = +2
Query: 233 STSLRNPLLFVEQPVPQAVVTSWVSQTYAKEQAKACTTLSELSVWQEAPIPGG 391
S SLRN L + P P A S + T A + ++ VWQ P+ GG
Sbjct: 119 SPSLRNGTLRFDVPAPPAAEYSAGAYTIYATVALPGNSTTQNMVWQAGPVRGG 171
>02_04_0228 -
21083917-21084067,21084489-21084577,21084662-21084731,
21084747-21084823,21084954-21085337,21085420-21085760,
21085869-21085950,21086033-21086391,21087084-21087204,
21087427-21087512,21088896-21088944,21089262-21089275,
21089467-21089545
Length = 633
Score = 29.5 bits (63), Expect = 2.6
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -3
Query: 477 DDMLHALPPPSNDTLRFFLNDCAS 406
+D++H PP S +TL+ F+ D S
Sbjct: 187 EDLIHRRPPVSRNTLKIFIRDATS 210
>11_04_0310 + 16218439-16219383
Length = 314
Score = 27.9 bits (59), Expect = 7.8
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Frame = +2
Query: 392 MPGWMLAQSFKKN--LKVSLLGGGRAWSMSSSL-EPDGKARDCRSW 520
+ WM +QS K L + GGG +++++L G+ DCR+W
Sbjct: 189 LEAWMKSQSHKNRGVLAIHGFGGGGKSTIAAALYRKHGQNFDCRAW 234
>09_02_0489 -
9847903-9848081,9848916-9849107,9849195-9849276,
9849529-9849722,9851009-9851601,9851827-9851870
Length = 427
Score = 27.9 bits (59), Expect = 7.8
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = +3
Query: 372 RRPYRGACRAGCSHSRLKRTSKCHCLGEAGRGACRRR 482
RR RGA AGC R T+ + A G +RR
Sbjct: 93 RRTRRGAAAAGCGCRRRSPTAAANHASPAANGCAQRR 129
>09_02_0461 +
9577003-9577065,9577471-9577568,9578339-9578394,
9578446-9578672,9578956-9579045
Length = 177
Score = 27.9 bits (59), Expect = 7.8
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = +2
Query: 302 VSQTYAKEQAKACTTLSELSVWQEAPIPGGMPGWMLAQSFKKNL--KVSLLGGGRAWSM 472
V++T KE KA L W PGG P WM+ +N+ + +L G W++
Sbjct: 27 VTRTKYKEPTKA------LIYWPNLSNPGGNPAWMMLLLLMENILFDMIVLAGMGLWTL 79
>09_02_0236 - 6131072-6131639,6132047-6132180
Length = 233
Score = 27.9 bits (59), Expect = 7.8
Identities = 22/66 (33%), Positives = 27/66 (40%), Gaps = 8/66 (12%)
Frame = +3
Query: 330 QKHALHCQSSPCGRRRPYRGA--------CRAGCSHSRLKRTSKCHCLGEAGRGACRRRW 485
++HA+H Q P P GA CR C R+ R K G G RRRW
Sbjct: 126 RRHAIHLQPPP-PLPPPPEGAFAAGSARRCRRHCHRRRIHRRRKVR-----GGGGSRRRW 179
Query: 486 SRTGRP 503
+R P
Sbjct: 180 TRLPPP 185
>05_07_0260 -
28739035-28739085,28739316-28739596,28740545-28740572,
28740653-28740749,28741216-28741272,28741353-28741415,
28741533-28741621,28741779-28741865,28742041-28742162,
28742245-28742500,28742595-28742744,28743120-28743278,
28743820-28743892,28743968-28744024,28744115-28744243,
28744469-28744560,28745220-28745252
Length = 607
Score = 27.9 bits (59), Expect = 7.8
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = +2
Query: 341 TTLSELSVWQEAPIPGGMPGWMLA 412
T +S++ +W + P G P W+L+
Sbjct: 446 TYISQIHIWLRSSTPNGQPKWLLS 469
>04_01_0208 + 2596110-2596928
Length = 272
Score = 27.9 bits (59), Expect = 7.8
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = +3
Query: 384 RGACRAGCSHSRLKRTSKCHCLGEAGRGACRRRWSRTGR 500
RG R + +RL+R S C G G RRRW R R
Sbjct: 149 RGGKRRAMAGTRLRR-SPCETEGRPGWRRWRRRWRRRRR 186
>02_05_0544 +
29876337-29876524,29876850-29876882,29878390-29878577,
29879755-29879811,29879909-29880061,29880812-29881278,
29881477-29881635,29881718-29881834,29881966-29882117,
29883436-29883530,29883619-29884525,29884604-29884688,
29884775-29884843,29885045-29885224,29885367-29885495
Length = 992
Score = 27.9 bits (59), Expect = 7.8
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Frame = -2
Query: 424 FKRLCEHPA--RHAPRYGRLLPHGEL*QCSACFCLFFGICLRDPGCDNCLWDWLLNEQ 257
FKRLCE+ R P L P+ + C G+ R +NC DWLL +
Sbjct: 77 FKRLCEYQTGKRSNPCPRSLPPNAVMGLALTRDCRGSGLLKRCYALENCGQDWLLGRR 134
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,948,278
Number of Sequences: 37544
Number of extensions: 410639
Number of successful extensions: 1678
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1676
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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