Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0039.Seq
(674 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB209479-1|BAD92716.1| 1653|Homo sapiens VARS2L protein variant ... 93 1e-18
Y07595-1|CAA68870.1| 462|Homo sapiens transcription factor TFII... 89 1e-17
BT007321-1|AAP35985.1| 462|Homo sapiens general transcription f... 89 1e-17
BC016302-1|AAH16302.1| 462|Homo sapiens general transcription f... 89 1e-17
BC004935-1|AAH04935.1| 462|Homo sapiens general transcription f... 89 1e-17
BA000025-65|BAB63317.1| 462|Homo sapiens Transcription factor I... 89 1e-17
AY124590-1|AAM64222.1| 462|Homo sapiens general transcription f... 89 1e-17
AL773541-3|CAI18452.1| 462|Homo sapiens general transcription f... 89 1e-17
AL669830-2|CAI18003.1| 462|Homo sapiens general transcription f... 89 1e-17
AL662854-11|CAI17435.1| 462|Homo sapiens general transcription ... 89 1e-17
AK222607-1|BAD96327.1| 462|Homo sapiens general transcription f... 89 1e-17
AB202101-1|BAE78622.1| 462|Homo sapiens general transcription f... 89 1e-17
AB103609-1|BAF31271.1| 462|Homo sapiens TFIIH protein protein. 89 1e-17
AB088103-1|BAC54936.1| 462|Homo sapiens transcription factor II... 89 1e-17
AL669830-1|CAM25402.1| 138|Homo sapiens general transcription f... 70 9e-12
AL662854-10|CAM24840.1| 138|Homo sapiens general transcription ... 70 9e-12
J03909-1|AAA36105.1| 303|Homo sapiens gamma-interferon-inducibl... 32 2.1
AK127434-1|BAC86978.1| 292|Homo sapiens protein ( Homo sapiens ... 31 2.8
X71923-1|CAA50739.1| 750|Homo sapiens tenascin-X precursor prot... 31 3.7
U89337-3|AAB47488.1| 4289|Homo sapiens tenascin X protein. 31 3.7
AL772248-1|CAI18078.1| 4222|Homo sapiens tenascin XB protein. 31 3.7
AL662884-1|CAI18332.1| 4222|Homo sapiens tenascin XB protein. 31 3.7
AL662849-16|CAI17471.1| 4222|Homo sapiens tenascin XB protein. 31 3.7
AL662828-1|CAI17414.1| 4222|Homo sapiens tenascin XB protein. 31 3.7
AL645922-1|CAI41718.1| 4222|Homo sapiens tenascin XB protein. 31 3.7
AL049547-2|CAB89296.1| 4288|Homo sapiens dJ34F7.1.1 (tenascin XB... 31 3.7
AK096981-1|BAC04921.1| 323|Homo sapiens protein ( Homo sapiens ... 31 4.9
AK055082-1|BAB70851.1| 139|Homo sapiens protein ( Homo sapiens ... 31 4.9
BC015202-1|AAH15202.2| 561|Homo sapiens CENPT protein protein. 30 8.6
BC007642-1|AAH07642.1| 558|Homo sapiens CENPT protein protein. 30 8.6
AK023173-1|BAB14445.1| 299|Homo sapiens protein ( Homo sapiens ... 30 8.6
>AB209479-1|BAD92716.1| 1653|Homo sapiens VARS2L protein variant
protein.
Length = 1653
Score = 92.7 bits (220), Expect = 1e-18
Identities = 53/151 (35%), Positives = 79/151 (52%), Gaps = 4/151 (2%)
Frame = +2
Query: 95 FKFESFAYTTMQRPSRIXXXXXXXXXRDSLQLPHYMSRCISRITRASTSLRNPLLFVEQP 274
FK + TMQ + I + P +MS C+ + +LF+EQP
Sbjct: 53 FKGTEPSTPTMQESAGILRGPEPWGIGPIVWAPCHMSGCLQGAPILGKNWVMRMLFLEQP 112
Query: 275 VPQAVVTSWVSQTYAKEQAKACTTLSELSVWQEAPIPGGMPGWMLAQSFKKNLKVSLLGG 454
+PQA V WV + ++K Q ++ LS L +W +PGG+ G +L F++NL+++LLGG
Sbjct: 113 LPQAAVALWVKKEFSKAQEESTGLLSGLRIWHTQLLPGGLQGLILNPIFRQNLRIALLGG 172
Query: 455 GRAWS-MSSSLEPDGKARDCRS---WTRTRW 535
G+AWS +S L PD ARD S + RW
Sbjct: 173 GKAWSDDTSQLGPDKHARDVPSLDKYAEERW 203
Score = 42.3 bits (95), Expect = 0.002
Identities = 21/65 (32%), Positives = 35/65 (53%)
Frame = +1
Query: 436 SVIAWGRQGVEHVVVAGAGREGPGLSFLDAYALERWECVLHYMVGNAQTEGISADAVRIM 615
+++ G+ + G + + LD YA ERWE VLH+MVG + + +S D +++
Sbjct: 168 ALLGGGKAWSDDTSQLGPDKHARDVPSLDKYAEERWEVVLHFMVG-SPSAAVSQDLAQLL 226
Query: 616 LHAGL 630
AGL
Sbjct: 227 SQAGL 231
>Y07595-1|CAA68870.1| 462|Homo sapiens transcription factor TFIIH
protein.
Length = 462
Score = 89.0 bits (211), Expect = 1e-17
Identities = 43/98 (43%), Positives = 63/98 (64%), Gaps = 4/98 (4%)
Frame = +2
Query: 254 LLFVEQPVPQAVVTSWVSQTYAKEQAKACTTLSELSVWQEAPIPGGMPGWMLAQSFKKNL 433
+LF+EQP+PQA V WV + ++K Q ++ LS L +W +PGG+ G +L F++NL
Sbjct: 59 MLFLEQPLPQAAVALWVKKEFSKAQEESTGLLSGLRIWHTQLLPGGLQGLILNPIFRQNL 118
Query: 434 KVSLLGGGRAWS-MSSSLEPDGKARDCRS---WTRTRW 535
+++LLGGG+AWS +S L PD ARD S + RW
Sbjct: 119 RIALLGGGKAWSDDTSQLGPDKHARDVPSLDKYAEERW 156
Score = 55.2 bits (127), Expect = 2e-07
Identities = 23/44 (52%), Positives = 33/44 (75%)
Frame = +3
Query: 120 LQCKDLHEYLKSRSPQFLETLYNYPTICLAVYRELPELARHFVI 251
LQC++L E+L SP L+ LY +P CLAV+RELP LA+++V+
Sbjct: 14 LQCRNLQEFLGGLSPGVLDRLYGHPATCLAVFRELPSLAKNWVM 57
Score = 42.3 bits (95), Expect = 0.002
Identities = 21/65 (32%), Positives = 35/65 (53%)
Frame = +1
Query: 436 SVIAWGRQGVEHVVVAGAGREGPGLSFLDAYALERWECVLHYMVGNAQTEGISADAVRIM 615
+++ G+ + G + + LD YA ERWE VLH+MVG + + +S D +++
Sbjct: 121 ALLGGGKAWSDDTSQLGPDKHARDVPSLDKYAEERWEVVLHFMVG-SPSAAVSQDLAQLL 179
Query: 616 LHAGL 630
AGL
Sbjct: 180 SQAGL 184
>BT007321-1|AAP35985.1| 462|Homo sapiens general transcription
factor IIH, polypeptide 4, 52kDa protein.
Length = 462
Score = 89.0 bits (211), Expect = 1e-17
Identities = 43/98 (43%), Positives = 63/98 (64%), Gaps = 4/98 (4%)
Frame = +2
Query: 254 LLFVEQPVPQAVVTSWVSQTYAKEQAKACTTLSELSVWQEAPIPGGMPGWMLAQSFKKNL 433
+LF+EQP+PQA V WV + ++K Q ++ LS L +W +PGG+ G +L F++NL
Sbjct: 59 MLFLEQPLPQAAVALWVKKEFSKAQEESTGLLSGLRIWHTQLLPGGLQGLILNPIFRQNL 118
Query: 434 KVSLLGGGRAWS-MSSSLEPDGKARDCRS---WTRTRW 535
+++LLGGG+AWS +S L PD ARD S + RW
Sbjct: 119 RIALLGGGKAWSDDTSQLGPDKHARDVPSLDKYAEERW 156
Score = 55.2 bits (127), Expect = 2e-07
Identities = 23/44 (52%), Positives = 33/44 (75%)
Frame = +3
Query: 120 LQCKDLHEYLKSRSPQFLETLYNYPTICLAVYRELPELARHFVI 251
LQC++L E+L SP L+ LY +P CLAV+RELP LA+++V+
Sbjct: 14 LQCRNLQEFLGGLSPGVLDRLYGHPATCLAVFRELPSLAKNWVM 57
Score = 42.3 bits (95), Expect = 0.002
Identities = 21/65 (32%), Positives = 35/65 (53%)
Frame = +1
Query: 436 SVIAWGRQGVEHVVVAGAGREGPGLSFLDAYALERWECVLHYMVGNAQTEGISADAVRIM 615
+++ G+ + G + + LD YA ERWE VLH+MVG + + +S D +++
Sbjct: 121 ALLGGGKAWSDDTSQLGPDKHARDVPSLDKYAEERWEVVLHFMVG-SPSAAVSQDLAQLL 179
Query: 616 LHAGL 630
AGL
Sbjct: 180 SQAGL 184
>BC016302-1|AAH16302.1| 462|Homo sapiens general transcription
factor IIH, polypeptide 4, 52kDa protein.
Length = 462
Score = 89.0 bits (211), Expect = 1e-17
Identities = 43/98 (43%), Positives = 63/98 (64%), Gaps = 4/98 (4%)
Frame = +2
Query: 254 LLFVEQPVPQAVVTSWVSQTYAKEQAKACTTLSELSVWQEAPIPGGMPGWMLAQSFKKNL 433
+LF+EQP+PQA V WV + ++K Q ++ LS L +W +PGG+ G +L F++NL
Sbjct: 59 MLFLEQPLPQAAVALWVKKEFSKAQEESTGLLSGLRIWHTQLLPGGLQGLILNPIFRQNL 118
Query: 434 KVSLLGGGRAWS-MSSSLEPDGKARDCRS---WTRTRW 535
+++LLGGG+AWS +S L PD ARD S + RW
Sbjct: 119 RIALLGGGKAWSDDTSQLGPDKHARDVPSLDKYAEERW 156
Score = 55.2 bits (127), Expect = 2e-07
Identities = 23/44 (52%), Positives = 33/44 (75%)
Frame = +3
Query: 120 LQCKDLHEYLKSRSPQFLETLYNYPTICLAVYRELPELARHFVI 251
LQC++L E+L SP L+ LY +P CLAV+RELP LA+++V+
Sbjct: 14 LQCRNLQEFLGGLSPGVLDRLYGHPATCLAVFRELPSLAKNWVM 57
Score = 42.3 bits (95), Expect = 0.002
Identities = 21/65 (32%), Positives = 35/65 (53%)
Frame = +1
Query: 436 SVIAWGRQGVEHVVVAGAGREGPGLSFLDAYALERWECVLHYMVGNAQTEGISADAVRIM 615
+++ G+ + G + + LD YA ERWE VLH+MVG + + +S D +++
Sbjct: 121 ALLGGGKAWSDDTSQLGPDKHARDVPSLDKYAEERWEVVLHFMVG-SPSAAVSQDLAQLL 179
Query: 616 LHAGL 630
AGL
Sbjct: 180 SQAGL 184
>BC004935-1|AAH04935.1| 462|Homo sapiens general transcription
factor IIH, polypeptide 4, 52kDa protein.
Length = 462
Score = 89.0 bits (211), Expect = 1e-17
Identities = 43/98 (43%), Positives = 63/98 (64%), Gaps = 4/98 (4%)
Frame = +2
Query: 254 LLFVEQPVPQAVVTSWVSQTYAKEQAKACTTLSELSVWQEAPIPGGMPGWMLAQSFKKNL 433
+LF+EQP+PQA V WV + ++K Q ++ LS L +W +PGG+ G +L F++NL
Sbjct: 59 MLFLEQPLPQAAVALWVKKEFSKAQEESTGLLSGLRIWHTQLLPGGLQGLILNPIFRQNL 118
Query: 434 KVSLLGGGRAWS-MSSSLEPDGKARDCRS---WTRTRW 535
+++LLGGG+AWS +S L PD ARD S + RW
Sbjct: 119 RIALLGGGKAWSDDTSQLGPDKHARDVPSLDKYAEERW 156
Score = 55.2 bits (127), Expect = 2e-07
Identities = 23/44 (52%), Positives = 33/44 (75%)
Frame = +3
Query: 120 LQCKDLHEYLKSRSPQFLETLYNYPTICLAVYRELPELARHFVI 251
LQC++L E+L SP L+ LY +P CLAV+RELP LA+++V+
Sbjct: 14 LQCRNLQEFLGGLSPGVLDRLYGHPATCLAVFRELPSLAKNWVM 57
Score = 42.3 bits (95), Expect = 0.002
Identities = 21/65 (32%), Positives = 35/65 (53%)
Frame = +1
Query: 436 SVIAWGRQGVEHVVVAGAGREGPGLSFLDAYALERWECVLHYMVGNAQTEGISADAVRIM 615
+++ G+ + G + + LD YA ERWE VLH+MVG + + +S D +++
Sbjct: 121 ALLGGGKAWSDDTSQLGPDKHARDVPSLDKYAEERWEVVLHFMVG-SPSAAVSQDLAQLL 179
Query: 616 LHAGL 630
AGL
Sbjct: 180 SQAGL 184
>BA000025-65|BAB63317.1| 462|Homo sapiens Transcription factor II H
protein.
Length = 462
Score = 89.0 bits (211), Expect = 1e-17
Identities = 43/98 (43%), Positives = 63/98 (64%), Gaps = 4/98 (4%)
Frame = +2
Query: 254 LLFVEQPVPQAVVTSWVSQTYAKEQAKACTTLSELSVWQEAPIPGGMPGWMLAQSFKKNL 433
+LF+EQP+PQA V WV + ++K Q ++ LS L +W +PGG+ G +L F++NL
Sbjct: 59 MLFLEQPLPQAAVALWVKKEFSKAQEESTGLLSGLRIWHTQLLPGGLQGLILNPIFRQNL 118
Query: 434 KVSLLGGGRAWS-MSSSLEPDGKARDCRS---WTRTRW 535
+++LLGGG+AWS +S L PD ARD S + RW
Sbjct: 119 RIALLGGGKAWSDDTSQLGPDKHARDVPSLDKYAEERW 156
Score = 55.2 bits (127), Expect = 2e-07
Identities = 23/44 (52%), Positives = 33/44 (75%)
Frame = +3
Query: 120 LQCKDLHEYLKSRSPQFLETLYNYPTICLAVYRELPELARHFVI 251
LQC++L E+L SP L+ LY +P CLAV+RELP LA+++V+
Sbjct: 14 LQCRNLQEFLGGLSPGVLDRLYGHPATCLAVFRELPSLAKNWVM 57
Score = 42.3 bits (95), Expect = 0.002
Identities = 21/65 (32%), Positives = 35/65 (53%)
Frame = +1
Query: 436 SVIAWGRQGVEHVVVAGAGREGPGLSFLDAYALERWECVLHYMVGNAQTEGISADAVRIM 615
+++ G+ + G + + LD YA ERWE VLH+MVG + + +S D +++
Sbjct: 121 ALLGGGKAWSDDTSQLGPDKHARDVPSLDKYAEERWEVVLHFMVG-SPSAAVSQDLAQLL 179
Query: 616 LHAGL 630
AGL
Sbjct: 180 SQAGL 184
>AY124590-1|AAM64222.1| 462|Homo sapiens general transcription
factor IIH, polypeptide 4 (52kD subunit) protein.
Length = 462
Score = 89.0 bits (211), Expect = 1e-17
Identities = 43/98 (43%), Positives = 63/98 (64%), Gaps = 4/98 (4%)
Frame = +2
Query: 254 LLFVEQPVPQAVVTSWVSQTYAKEQAKACTTLSELSVWQEAPIPGGMPGWMLAQSFKKNL 433
+LF+EQP+PQA V WV + ++K Q ++ LS L +W +PGG+ G +L F++NL
Sbjct: 59 MLFLEQPLPQAAVALWVKKEFSKAQEESTGLLSGLRIWHTQLLPGGLQGLILNPIFRQNL 118
Query: 434 KVSLLGGGRAWS-MSSSLEPDGKARDCRS---WTRTRW 535
+++LLGGG+AWS +S L PD ARD S + RW
Sbjct: 119 RIALLGGGKAWSDDTSQLGPDKHARDVPSLDKYAEERW 156
Score = 55.2 bits (127), Expect = 2e-07
Identities = 23/44 (52%), Positives = 33/44 (75%)
Frame = +3
Query: 120 LQCKDLHEYLKSRSPQFLETLYNYPTICLAVYRELPELARHFVI 251
LQC++L E+L SP L+ LY +P CLAV+RELP LA+++V+
Sbjct: 14 LQCRNLQEFLGGLSPGVLDRLYGHPATCLAVFRELPSLAKNWVM 57
Score = 42.3 bits (95), Expect = 0.002
Identities = 21/65 (32%), Positives = 35/65 (53%)
Frame = +1
Query: 436 SVIAWGRQGVEHVVVAGAGREGPGLSFLDAYALERWECVLHYMVGNAQTEGISADAVRIM 615
+++ G+ + G + + LD YA ERWE VLH+MVG + + +S D +++
Sbjct: 121 ALLGGGKAWSDDTSQLGPDKHARDVPSLDKYAEERWEVVLHFMVG-SPSAAVSQDLAQLL 179
Query: 616 LHAGL 630
AGL
Sbjct: 180 SQAGL 184
>AL773541-3|CAI18452.1| 462|Homo sapiens general transcription
factor IIH, polypeptide 4, 52kDa protein.
Length = 462
Score = 89.0 bits (211), Expect = 1e-17
Identities = 43/98 (43%), Positives = 63/98 (64%), Gaps = 4/98 (4%)
Frame = +2
Query: 254 LLFVEQPVPQAVVTSWVSQTYAKEQAKACTTLSELSVWQEAPIPGGMPGWMLAQSFKKNL 433
+LF+EQP+PQA V WV + ++K Q ++ LS L +W +PGG+ G +L F++NL
Sbjct: 59 MLFLEQPLPQAAVALWVKKEFSKAQEESTGLLSGLRIWHTQLLPGGLQGLILNPIFRQNL 118
Query: 434 KVSLLGGGRAWS-MSSSLEPDGKARDCRS---WTRTRW 535
+++LLGGG+AWS +S L PD ARD S + RW
Sbjct: 119 RIALLGGGKAWSDDTSQLGPDKHARDVPSLDKYAEERW 156
Score = 55.2 bits (127), Expect = 2e-07
Identities = 23/44 (52%), Positives = 33/44 (75%)
Frame = +3
Query: 120 LQCKDLHEYLKSRSPQFLETLYNYPTICLAVYRELPELARHFVI 251
LQC++L E+L SP L+ LY +P CLAV+RELP LA+++V+
Sbjct: 14 LQCRNLQEFLGGLSPGVLDRLYGHPATCLAVFRELPSLAKNWVM 57
Score = 42.3 bits (95), Expect = 0.002
Identities = 21/65 (32%), Positives = 35/65 (53%)
Frame = +1
Query: 436 SVIAWGRQGVEHVVVAGAGREGPGLSFLDAYALERWECVLHYMVGNAQTEGISADAVRIM 615
+++ G+ + G + + LD YA ERWE VLH+MVG + + +S D +++
Sbjct: 121 ALLGGGKAWSDDTSQLGPDKHARDVPSLDKYAEERWEVVLHFMVG-SPSAAVSQDLAQLL 179
Query: 616 LHAGL 630
AGL
Sbjct: 180 SQAGL 184
>AL669830-2|CAI18003.1| 462|Homo sapiens general transcription
factor IIH, polypeptide 4, 52kDa protein.
Length = 462
Score = 89.0 bits (211), Expect = 1e-17
Identities = 43/98 (43%), Positives = 63/98 (64%), Gaps = 4/98 (4%)
Frame = +2
Query: 254 LLFVEQPVPQAVVTSWVSQTYAKEQAKACTTLSELSVWQEAPIPGGMPGWMLAQSFKKNL 433
+LF+EQP+PQA V WV + ++K Q ++ LS L +W +PGG+ G +L F++NL
Sbjct: 59 MLFLEQPLPQAAVALWVKKEFSKAQEESTGLLSGLRIWHTQLLPGGLQGLILNPIFRQNL 118
Query: 434 KVSLLGGGRAWS-MSSSLEPDGKARDCRS---WTRTRW 535
+++LLGGG+AWS +S L PD ARD S + RW
Sbjct: 119 RIALLGGGKAWSDDTSQLGPDKHARDVPSLDKYAEERW 156
Score = 55.2 bits (127), Expect = 2e-07
Identities = 23/44 (52%), Positives = 33/44 (75%)
Frame = +3
Query: 120 LQCKDLHEYLKSRSPQFLETLYNYPTICLAVYRELPELARHFVI 251
LQC++L E+L SP L+ LY +P CLAV+RELP LA+++V+
Sbjct: 14 LQCRNLQEFLGGLSPGVLDRLYGHPATCLAVFRELPSLAKNWVM 57
Score = 42.3 bits (95), Expect = 0.002
Identities = 21/65 (32%), Positives = 35/65 (53%)
Frame = +1
Query: 436 SVIAWGRQGVEHVVVAGAGREGPGLSFLDAYALERWECVLHYMVGNAQTEGISADAVRIM 615
+++ G+ + G + + LD YA ERWE VLH+MVG + + +S D +++
Sbjct: 121 ALLGGGKAWSDDTSQLGPDKHARDVPSLDKYAEERWEVVLHFMVG-SPSAAVSQDLAQLL 179
Query: 616 LHAGL 630
AGL
Sbjct: 180 SQAGL 184
>AL662854-11|CAI17435.1| 462|Homo sapiens general transcription
factor IIH, polypeptide 4, 52kDa protein.
Length = 462
Score = 89.0 bits (211), Expect = 1e-17
Identities = 43/98 (43%), Positives = 63/98 (64%), Gaps = 4/98 (4%)
Frame = +2
Query: 254 LLFVEQPVPQAVVTSWVSQTYAKEQAKACTTLSELSVWQEAPIPGGMPGWMLAQSFKKNL 433
+LF+EQP+PQA V WV + ++K Q ++ LS L +W +PGG+ G +L F++NL
Sbjct: 59 MLFLEQPLPQAAVALWVKKEFSKAQEESTGLLSGLRIWHTQLLPGGLQGLILNPIFRQNL 118
Query: 434 KVSLLGGGRAWS-MSSSLEPDGKARDCRS---WTRTRW 535
+++LLGGG+AWS +S L PD ARD S + RW
Sbjct: 119 RIALLGGGKAWSDDTSQLGPDKHARDVPSLDKYAEERW 156
Score = 55.2 bits (127), Expect = 2e-07
Identities = 23/44 (52%), Positives = 33/44 (75%)
Frame = +3
Query: 120 LQCKDLHEYLKSRSPQFLETLYNYPTICLAVYRELPELARHFVI 251
LQC++L E+L SP L+ LY +P CLAV+RELP LA+++V+
Sbjct: 14 LQCRNLQEFLGGLSPGVLDRLYGHPATCLAVFRELPSLAKNWVM 57
Score = 42.3 bits (95), Expect = 0.002
Identities = 21/65 (32%), Positives = 35/65 (53%)
Frame = +1
Query: 436 SVIAWGRQGVEHVVVAGAGREGPGLSFLDAYALERWECVLHYMVGNAQTEGISADAVRIM 615
+++ G+ + G + + LD YA ERWE VLH+MVG + + +S D +++
Sbjct: 121 ALLGGGKAWSDDTSQLGPDKHARDVPSLDKYAEERWEVVLHFMVG-SPSAAVSQDLAQLL 179
Query: 616 LHAGL 630
AGL
Sbjct: 180 SQAGL 184
>AK222607-1|BAD96327.1| 462|Homo sapiens general transcription
factor IIH, polypeptide 4, 52kDa variant protein.
Length = 462
Score = 89.0 bits (211), Expect = 1e-17
Identities = 43/98 (43%), Positives = 63/98 (64%), Gaps = 4/98 (4%)
Frame = +2
Query: 254 LLFVEQPVPQAVVTSWVSQTYAKEQAKACTTLSELSVWQEAPIPGGMPGWMLAQSFKKNL 433
+LF+EQP+PQA V WV + ++K Q ++ LS L +W +PGG+ G +L F++NL
Sbjct: 59 MLFLEQPLPQAAVALWVKKEFSKAQEESTGLLSGLRIWHTQLLPGGLQGLILNPIFRQNL 118
Query: 434 KVSLLGGGRAWS-MSSSLEPDGKARDCRS---WTRTRW 535
+++LLGGG+AWS +S L PD ARD S + RW
Sbjct: 119 RIALLGGGKAWSDDTSQLGPDKHARDVPSLDKYAEERW 156
Score = 55.2 bits (127), Expect = 2e-07
Identities = 23/44 (52%), Positives = 33/44 (75%)
Frame = +3
Query: 120 LQCKDLHEYLKSRSPQFLETLYNYPTICLAVYRELPELARHFVI 251
LQC++L E+L SP L+ LY +P CLAV+RELP LA+++V+
Sbjct: 14 LQCRNLQEFLGGLSPGVLDRLYGHPATCLAVFRELPSLAKNWVM 57
Score = 42.3 bits (95), Expect = 0.002
Identities = 21/65 (32%), Positives = 35/65 (53%)
Frame = +1
Query: 436 SVIAWGRQGVEHVVVAGAGREGPGLSFLDAYALERWECVLHYMVGNAQTEGISADAVRIM 615
+++ G+ + G + + LD YA ERWE VLH+MVG + + +S D +++
Sbjct: 121 ALLGGGKAWSDDTSQLGPDKHARDVPSLDKYAEERWEVVLHFMVG-SPSAAVSQDLAQLL 179
Query: 616 LHAGL 630
AGL
Sbjct: 180 SQAGL 184
>AB202101-1|BAE78622.1| 462|Homo sapiens general transcription
factor IIH, polypeptide 4, 52kDa protein.
Length = 462
Score = 89.0 bits (211), Expect = 1e-17
Identities = 43/98 (43%), Positives = 63/98 (64%), Gaps = 4/98 (4%)
Frame = +2
Query: 254 LLFVEQPVPQAVVTSWVSQTYAKEQAKACTTLSELSVWQEAPIPGGMPGWMLAQSFKKNL 433
+LF+EQP+PQA V WV + ++K Q ++ LS L +W +PGG+ G +L F++NL
Sbjct: 59 MLFLEQPLPQAAVALWVKKEFSKAQEESTGLLSGLRIWHTQLLPGGLQGLILNPIFRQNL 118
Query: 434 KVSLLGGGRAWS-MSSSLEPDGKARDCRS---WTRTRW 535
+++LLGGG+AWS +S L PD ARD S + RW
Sbjct: 119 RIALLGGGKAWSDDTSQLGPDKHARDVPSLDKYAEERW 156
Score = 55.2 bits (127), Expect = 2e-07
Identities = 23/44 (52%), Positives = 33/44 (75%)
Frame = +3
Query: 120 LQCKDLHEYLKSRSPQFLETLYNYPTICLAVYRELPELARHFVI 251
LQC++L E+L SP L+ LY +P CLAV+RELP LA+++V+
Sbjct: 14 LQCRNLQEFLGGLSPGVLDRLYGHPATCLAVFRELPSLAKNWVM 57
Score = 42.3 bits (95), Expect = 0.002
Identities = 21/65 (32%), Positives = 35/65 (53%)
Frame = +1
Query: 436 SVIAWGRQGVEHVVVAGAGREGPGLSFLDAYALERWECVLHYMVGNAQTEGISADAVRIM 615
+++ G+ + G + + LD YA ERWE VLH+MVG + + +S D +++
Sbjct: 121 ALLGGGKAWSDDTSQLGPDKHARDVPSLDKYAEERWEVVLHFMVG-SPSAAVSQDLAQLL 179
Query: 616 LHAGL 630
AGL
Sbjct: 180 SQAGL 184
>AB103609-1|BAF31271.1| 462|Homo sapiens TFIIH protein protein.
Length = 462
Score = 89.0 bits (211), Expect = 1e-17
Identities = 43/98 (43%), Positives = 63/98 (64%), Gaps = 4/98 (4%)
Frame = +2
Query: 254 LLFVEQPVPQAVVTSWVSQTYAKEQAKACTTLSELSVWQEAPIPGGMPGWMLAQSFKKNL 433
+LF+EQP+PQA V WV + ++K Q ++ LS L +W +PGG+ G +L F++NL
Sbjct: 59 MLFLEQPLPQAAVALWVKKEFSKAQEESTGLLSGLRIWHTQLLPGGLQGLILNPIFRQNL 118
Query: 434 KVSLLGGGRAWS-MSSSLEPDGKARDCRS---WTRTRW 535
+++LLGGG+AWS +S L PD ARD S + RW
Sbjct: 119 RIALLGGGKAWSDDTSQLGPDKHARDVPSLDKYAEERW 156
Score = 55.2 bits (127), Expect = 2e-07
Identities = 23/44 (52%), Positives = 33/44 (75%)
Frame = +3
Query: 120 LQCKDLHEYLKSRSPQFLETLYNYPTICLAVYRELPELARHFVI 251
LQC++L E+L SP L+ LY +P CLAV+RELP LA+++V+
Sbjct: 14 LQCRNLQEFLGGLSPGVLDRLYGHPATCLAVFRELPSLAKNWVM 57
Score = 42.3 bits (95), Expect = 0.002
Identities = 21/65 (32%), Positives = 35/65 (53%)
Frame = +1
Query: 436 SVIAWGRQGVEHVVVAGAGREGPGLSFLDAYALERWECVLHYMVGNAQTEGISADAVRIM 615
+++ G+ + G + + LD YA ERWE VLH+MVG + + +S D +++
Sbjct: 121 ALLGGGKAWSDDTSQLGPDKHARDVPSLDKYAEERWEVVLHFMVG-SPSAAVSQDLAQLL 179
Query: 616 LHAGL 630
AGL
Sbjct: 180 SQAGL 184
>AB088103-1|BAC54936.1| 462|Homo sapiens transcription factor II H
protein.
Length = 462
Score = 89.0 bits (211), Expect = 1e-17
Identities = 43/98 (43%), Positives = 63/98 (64%), Gaps = 4/98 (4%)
Frame = +2
Query: 254 LLFVEQPVPQAVVTSWVSQTYAKEQAKACTTLSELSVWQEAPIPGGMPGWMLAQSFKKNL 433
+LF+EQP+PQA V WV + ++K Q ++ LS L +W +PGG+ G +L F++NL
Sbjct: 59 MLFLEQPLPQAAVALWVKKEFSKAQEESTGLLSGLRIWHTQLLPGGLQGLILNPIFRQNL 118
Query: 434 KVSLLGGGRAWS-MSSSLEPDGKARDCRS---WTRTRW 535
+++LLGGG+AWS +S L PD ARD S + RW
Sbjct: 119 RIALLGGGKAWSDDTSQLGPDKHARDVPSLDKYAEERW 156
Score = 55.2 bits (127), Expect = 2e-07
Identities = 23/44 (52%), Positives = 33/44 (75%)
Frame = +3
Query: 120 LQCKDLHEYLKSRSPQFLETLYNYPTICLAVYRELPELARHFVI 251
LQC++L E+L SP L+ LY +P CLAV+RELP LA+++V+
Sbjct: 14 LQCRNLQEFLGGLSPGVLDRLYGHPATCLAVFRELPSLAKNWVM 57
Score = 42.3 bits (95), Expect = 0.002
Identities = 21/65 (32%), Positives = 35/65 (53%)
Frame = +1
Query: 436 SVIAWGRQGVEHVVVAGAGREGPGLSFLDAYALERWECVLHYMVGNAQTEGISADAVRIM 615
+++ G+ + G + + LD YA ERWE VLH+MVG + + +S D +++
Sbjct: 121 ALLGGGKAWSDDTSQLGPDKHARDVPSLDKYAEERWEVVLHFMVG-SPSAAVSQDLAQLL 179
Query: 616 LHAGL 630
AGL
Sbjct: 180 SQAGL 184
>AL669830-1|CAM25402.1| 138|Homo sapiens general transcription
factor IIH, polypeptide 4, 52kDa protein.
Length = 138
Score = 69.7 bits (163), Expect = 9e-12
Identities = 29/67 (43%), Positives = 46/67 (68%)
Frame = +2
Query: 254 LLFVEQPVPQAVVTSWVSQTYAKEQAKACTTLSELSVWQEAPIPGGMPGWMLAQSFKKNL 433
+LF+EQP+PQA V WV + ++K Q ++ LS L +W +PGG+ G +L F++NL
Sbjct: 59 MLFLEQPLPQAAVALWVKKEFSKAQEESTGLLSGLRIWHTQLLPGGLQGLILNPIFRQNL 118
Query: 434 KVSLLGG 454
+++LLGG
Sbjct: 119 RIALLGG 125
Score = 55.2 bits (127), Expect = 2e-07
Identities = 23/44 (52%), Positives = 33/44 (75%)
Frame = +3
Query: 120 LQCKDLHEYLKSRSPQFLETLYNYPTICLAVYRELPELARHFVI 251
LQC++L E+L SP L+ LY +P CLAV+RELP LA+++V+
Sbjct: 14 LQCRNLQEFLGGLSPGVLDRLYGHPATCLAVFRELPSLAKNWVM 57
>AL662854-10|CAM24840.1| 138|Homo sapiens general transcription
factor IIH, polypeptide 4, 52kDa protein.
Length = 138
Score = 69.7 bits (163), Expect = 9e-12
Identities = 29/67 (43%), Positives = 46/67 (68%)
Frame = +2
Query: 254 LLFVEQPVPQAVVTSWVSQTYAKEQAKACTTLSELSVWQEAPIPGGMPGWMLAQSFKKNL 433
+LF+EQP+PQA V WV + ++K Q ++ LS L +W +PGG+ G +L F++NL
Sbjct: 59 MLFLEQPLPQAAVALWVKKEFSKAQEESTGLLSGLRIWHTQLLPGGLQGLILNPIFRQNL 118
Query: 434 KVSLLGG 454
+++LLGG
Sbjct: 119 RIALLGG 125
Score = 55.2 bits (127), Expect = 2e-07
Identities = 23/44 (52%), Positives = 33/44 (75%)
Frame = +3
Query: 120 LQCKDLHEYLKSRSPQFLETLYNYPTICLAVYRELPELARHFVI 251
LQC++L E+L SP L+ LY +P CLAV+RELP LA+++V+
Sbjct: 14 LQCRNLQEFLGGLSPGVLDRLYGHPATCLAVFRELPSLAKNWVM 57
>J03909-1|AAA36105.1| 303|Homo sapiens gamma-interferon-inducible
protein precursor protein.
Length = 303
Score = 31.9 bits (69), Expect = 2.1
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Frame = +3
Query: 348 CQSSPCGRRRPYRGACRAG---CSHSRLKRTSKCHCLGEAGRGACRRRWSRTGR 500
C S+P G R+ Y G C G +H+R + +C R+W GR
Sbjct: 176 CSSTPQGCRQNYHGVCNGGPRHAAHARQRPADRCSPATARVCALGHRQWETLGR 229
>AK127434-1|BAC86978.1| 292|Homo sapiens protein ( Homo sapiens
cDNA FLJ45526 fis, clone BRTHA2027227. ).
Length = 292
Score = 31.5 bits (68), Expect = 2.8
Identities = 20/63 (31%), Positives = 23/63 (36%)
Frame = +3
Query: 303 SRRHMPKNKQKHALHCQSSPCGRRRPYRGACRAGCSHSRLKRTSKCHCLGEAGRGACRRR 482
SR H+P C S P GRR CR C + H L A R R
Sbjct: 192 SRGHLPLPLPTPTTPCISQPPGRR------CRPHCGKELFRAPGALHFLPRRHPAAVRHR 245
Query: 483 WSR 491
W+R
Sbjct: 246 WTR 248
>X71923-1|CAA50739.1| 750|Homo sapiens tenascin-X precursor
protein.
Length = 750
Score = 31.1 bits (67), Expect = 3.7
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +3
Query: 363 CGRRRPYRGACRAGCSHSRLKRTSKCHCLGEAGRG 467
CG+ P AC GC L R +C C+ E RG
Sbjct: 681 CGQEEPPASACPGGCGPRELCRAGQCVCV-EGFRG 714
>U89337-3|AAB47488.1| 4289|Homo sapiens tenascin X protein.
Length = 4289
Score = 31.1 bits (67), Expect = 3.7
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +3
Query: 363 CGRRRPYRGACRAGCSHSRLKRTSKCHCLGEAGRG 467
CG+ P AC GC L R +C C+ E RG
Sbjct: 678 CGQEEPPASACPGGCGPRELCRAGQCVCV-EGFRG 711
>AL772248-1|CAI18078.1| 4222|Homo sapiens tenascin XB protein.
Length = 4222
Score = 31.1 bits (67), Expect = 3.7
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +3
Query: 363 CGRRRPYRGACRAGCSHSRLKRTSKCHCLGEAGRG 467
CG+ P AC GC L R +C C+ E RG
Sbjct: 678 CGQEEPPASACPGGCGPRELCRAGQCVCV-EGFRG 711
>AL662884-1|CAI18332.1| 4222|Homo sapiens tenascin XB protein.
Length = 4222
Score = 31.1 bits (67), Expect = 3.7
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +3
Query: 363 CGRRRPYRGACRAGCSHSRLKRTSKCHCLGEAGRG 467
CG+ P AC GC L R +C C+ E RG
Sbjct: 678 CGQEEPPASACPGGCGPRELCRAGQCVCV-EGFRG 711
>AL662849-16|CAI17471.1| 4222|Homo sapiens tenascin XB protein.
Length = 4222
Score = 31.1 bits (67), Expect = 3.7
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +3
Query: 363 CGRRRPYRGACRAGCSHSRLKRTSKCHCLGEAGRG 467
CG+ P AC GC L R +C C+ E RG
Sbjct: 678 CGQEEPPASACPGGCGPRELCRAGQCVCV-EGFRG 711
>AL662828-1|CAI17414.1| 4222|Homo sapiens tenascin XB protein.
Length = 4222
Score = 31.1 bits (67), Expect = 3.7
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +3
Query: 363 CGRRRPYRGACRAGCSHSRLKRTSKCHCLGEAGRG 467
CG+ P AC GC L R +C C+ E RG
Sbjct: 678 CGQEEPPASACPGGCGPRELCRAGQCVCV-EGFRG 711
>AL645922-1|CAI41718.1| 4222|Homo sapiens tenascin XB protein.
Length = 4222
Score = 31.1 bits (67), Expect = 3.7
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +3
Query: 363 CGRRRPYRGACRAGCSHSRLKRTSKCHCLGEAGRG 467
CG+ P AC GC L R +C C+ E RG
Sbjct: 678 CGQEEPPASACPGGCGPRELCRAGQCVCV-EGFRG 711
>AL049547-2|CAB89296.1| 4288|Homo sapiens dJ34F7.1.1 (tenascin XB
(isoform 1)) protein.
Length = 4288
Score = 31.1 bits (67), Expect = 3.7
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +3
Query: 363 CGRRRPYRGACRAGCSHSRLKRTSKCHCLGEAGRG 467
CG+ P AC GC L R +C C+ E RG
Sbjct: 677 CGQEEPPASACPGGCGPRELCRAGQCVCV-EGFRG 710
>AK096981-1|BAC04921.1| 323|Homo sapiens protein ( Homo sapiens
cDNA FLJ39662 fis, clone SMINT2007140. ).
Length = 323
Score = 30.7 bits (66), Expect = 4.9
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +3
Query: 378 PYRGACRAGCSHSRLKRTSKCHCLGEAGRGA-CRRRWSRTGRPG 506
P G+ R GC R++K CLG G A C R + G PG
Sbjct: 68 PGTGSGRGGCRCGSSARSAKLLCLGGRGHWATCSRGCPQAGLPG 111
>AK055082-1|BAB70851.1| 139|Homo sapiens protein ( Homo sapiens
cDNA FLJ30520 fis, clone BRAWH2000866. ).
Length = 139
Score = 30.7 bits (66), Expect = 4.9
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = -3
Query: 441 DTLRFFLNDCASIQPGMPPGMGASCHTESSDSVVHAFACSLAYVCE 304
D+L F C I +P G H ++S +H F CSL+ E
Sbjct: 57 DSLATFTPPCPRITLFLPVGFATHHHLKASSLWIHLFTCSLSVPLE 102
>BC015202-1|AAH15202.2| 561|Homo sapiens CENPT protein protein.
Length = 561
Score = 29.9 bits (64), Expect = 8.6
Identities = 32/104 (30%), Positives = 47/104 (45%), Gaps = 1/104 (0%)
Frame = +2
Query: 221 ITRASTSLRNPLLFVEQ-PVPQAVVTSWVSQTYAKEQAKACTTLSELSVWQEAPIPGGMP 397
+T +S+ P V+ P PQAV S Q +C +L EL + + P P
Sbjct: 95 LTAPESSILMPESVVKPVPAPQAVQPS--------RQESSCGSL-ELQLPELEPPTTLAP 145
Query: 398 GWMLAQSFKKNLKVSLLGGGRAWSMSSSLEPDGKARDCRSWTRT 529
G + K+ L++S+ G +S S EP G A D S TR+
Sbjct: 146 GLLAPGRRKQRLRLSVFQQGVDQGLSLSQEPQGNA-DASSLTRS 188
>BC007642-1|AAH07642.1| 558|Homo sapiens CENPT protein protein.
Length = 558
Score = 29.9 bits (64), Expect = 8.6
Identities = 32/104 (30%), Positives = 47/104 (45%), Gaps = 1/104 (0%)
Frame = +2
Query: 221 ITRASTSLRNPLLFVEQ-PVPQAVVTSWVSQTYAKEQAKACTTLSELSVWQEAPIPGGMP 397
+T +S+ P V+ P PQAV S Q +C +L EL + + P P
Sbjct: 92 LTAPESSILMPESVVKPVPAPQAVQPS--------RQESSCGSL-ELQLPELEPPTTLAP 142
Query: 398 GWMLAQSFKKNLKVSLLGGGRAWSMSSSLEPDGKARDCRSWTRT 529
G + K+ L++S+ G +S S EP G A D S TR+
Sbjct: 143 GLLAPGRRKQRLRLSVFQQGVDQGLSLSQEPQGNA-DASSLTRS 185
>AK023173-1|BAB14445.1| 299|Homo sapiens protein ( Homo sapiens
cDNA FLJ13111 fis, clone NT2RP3002566. ).
Length = 299
Score = 29.9 bits (64), Expect = 8.6
Identities = 32/104 (30%), Positives = 47/104 (45%), Gaps = 1/104 (0%)
Frame = +2
Query: 221 ITRASTSLRNPLLFVEQ-PVPQAVVTSWVSQTYAKEQAKACTTLSELSVWQEAPIPGGMP 397
+T +S+ P V+ P PQAV S Q +C +L EL + + P P
Sbjct: 95 LTAPESSILMPESVVKPVPAPQAVQPS--------RQESSCGSL-ELQLPELEPPTTLAP 145
Query: 398 GWMLAQSFKKNLKVSLLGGGRAWSMSSSLEPDGKARDCRSWTRT 529
G + K+ L++S+ G +S S EP G A D S TR+
Sbjct: 146 GLLAPGRRKQRLRLSVFQQGVDQGLSLSQEPQGNA-DASSLTRS 188
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,278,209
Number of Sequences: 237096
Number of extensions: 2207456
Number of successful extensions: 6589
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 6015
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6588
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7615267504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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