Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0039.Seq
         (674 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g17020.2 68417.m02567 transcription factor-related contains w...    36   0.019
At4g17020.1 68417.m02568 transcription factor-related contains w...    36   0.019
At3g61910.1 68416.m06953 no apical meristem (NAM) family protein...    31   0.70 
At1g49110.1 68414.m05506 hypothetical protein                          30   1.6  
At1g10480.1 68414.m01180 zinc finger (C2H2 type) family protein ...    29   2.1  
At5g42130.1 68418.m05129 mitochondrial substrate carrier family ...    29   3.8  
At2g34410.1 68415.m04217 O-acetyltransferase family protein simi...    28   6.6  
At5g04380.1 68418.m00430 S-adenosyl-L-methionine:carboxyl methyl...    27   8.7  

>At4g17020.2 68417.m02567 transcription factor-related contains weak
           similarity to Swiss-Prot:Q92759 TFIIH basal
           transcription factor complex p52 subunit (Basic
           transcription factor 52 kDa subunit, BTF2-p52, General
           transcription factor IIH polypeptide 4) [Homo sapiens]
          Length = 462

 Score = 36.3 bits (80), Expect = 0.019
 Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
 Frame = +1

Query: 502 PGLSFLDAYALERWECVLHYMVGNAQTE---GISADAVRIMLHAGLHDQKRK 648
           P L  L+ YAL++WEC L  ++ + Q E   GIS+  ++I    GL  Q+ K
Sbjct: 134 PSLQELETYALKQWECFLLQLINSGQGEKLTGISSSMMKI-FQRGLLSQRDK 184



 Score = 33.1 bits (72), Expect = 0.17
 Identities = 16/68 (23%), Positives = 32/68 (47%)
 Frame = +2

Query: 254 LLFVEQPVPQAVVTSWVSQTYAKEQAKACTTLSELSVWQEAPIPGGMPGWMLAQSFKKNL 433
           +L+++ PVP  ++  WV      +   A   L +L ++ E         + L  +F+ NL
Sbjct: 51  MLYIDVPVPATMMEEWVLADGTSKHRVAIDRLIQLRIFSEISDRKRGTSYSLNPTFQNNL 110

Query: 434 KVSLLGGG 457
           +  ++ GG
Sbjct: 111 QKHIISGG 118


>At4g17020.1 68417.m02568 transcription factor-related contains weak
           similarity to Swiss-Prot:Q92759 TFIIH basal
           transcription factor complex p52 subunit (Basic
           transcription factor 52 kDa subunit, BTF2-p52, General
           transcription factor IIH polypeptide 4) [Homo sapiens]
          Length = 452

 Score = 36.3 bits (80), Expect = 0.019
 Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
 Frame = +1

Query: 502 PGLSFLDAYALERWECVLHYMVGNAQTE---GISADAVRIMLHAGLHDQKRK 648
           P L  L+ YAL++WEC L  ++ + Q E   GIS+  ++I    GL  Q+ K
Sbjct: 134 PSLQELETYALKQWECFLLQLINSGQGEKLTGISSSMMKI-FQRGLLSQRDK 184



 Score = 33.1 bits (72), Expect = 0.17
 Identities = 16/68 (23%), Positives = 32/68 (47%)
 Frame = +2

Query: 254 LLFVEQPVPQAVVTSWVSQTYAKEQAKACTTLSELSVWQEAPIPGGMPGWMLAQSFKKNL 433
           +L+++ PVP  ++  WV      +   A   L +L ++ E         + L  +F+ NL
Sbjct: 51  MLYIDVPVPATMMEEWVLADGTSKHRVAIDRLIQLRIFSEISDRKRGTSYSLNPTFQNNL 110

Query: 434 KVSLLGGG 457
           +  ++ GG
Sbjct: 111 QKHIISGG 118


>At3g61910.1 68416.m06953 no apical meristem (NAM) family protein no
           apical meristem (NAM) - Petunia hybrida, EMBL:PHDNANAM
          Length = 334

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 15/64 (23%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = +2

Query: 242 LRNPLLFVEQPVPQAVVTSWVSQTYAKEQAKACTTLSELSVWQEA-PIPGGMPGWMLAQS 418
           +R  L+F +   P    + W+   Y  +++   ++  +  V  E   + G   GW++ + 
Sbjct: 113 MRKTLVFYKGRAPHGQKSDWIMHEYRLDESVLISSCGDHDVNVETCDVIGSDEGWVVCRV 172

Query: 419 FKKN 430
           FKKN
Sbjct: 173 FKKN 176


>At1g49110.1 68414.m05506 hypothetical protein
          Length = 212

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 20/67 (29%), Positives = 31/67 (46%)
 Frame = +1

Query: 463 VEHVVVAGAGREGPGLSFLDAYALERWECVLHYMVGNAQTEGISADAVRIMLHAGLHDQK 642
           +E   V+ A RE   L  +    +ER+E  +  M GN   +    D   ++ H G    K
Sbjct: 145 IERKTVSFALREADNLRAV-LKEMERFEVPVSSMDGNCLVDNKRKDIGSVLGHGGETSSK 203

Query: 643 RKRRVRR 663
           +KRR+ R
Sbjct: 204 KKRRLTR 210


>At1g10480.1 68414.m01180 zinc finger (C2H2 type) family protein
           contains Pfam profile: PF00096 zinc finger, C2H2 type
          Length = 211

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 19/54 (35%), Positives = 24/54 (44%)
 Frame = -3

Query: 408 SIQPGMPPGMGASCHTESSDSVVHAFACSLAYVCETQDVTTACGTGCSTNSSGL 247
           SI P M    G S    SSD  +  F   L     T ++TTA     STN++ L
Sbjct: 2   SINPTMSR-TGESSSGSSSDKTIKLFGFELISGSRTPEITTAESVSSSTNTTSL 54


>At5g42130.1 68418.m05129 mitochondrial substrate carrier family
           protein contains Pfam profile: PF00153 mitochondrial
           carrier protein
          Length = 412

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 18/57 (31%), Positives = 30/57 (52%)
 Frame = +2

Query: 230 ASTSLRNPLLFVEQPVPQAVVTSWVSQTYAKEQAKACTTLSELSVWQEAPIPGGMPG 400
           ASTS+ +P    E+P P+ +   W+    ++   +  T + +LSVW+ A I  G  G
Sbjct: 71  ASTSISDPTH--EKPGPEFL--KWIKPA-SRSSPRIQTLIKQLSVWERAIIGAGAGG 122


>At2g34410.1 68415.m04217 O-acetyltransferase family protein similar
           to O-acetyltransferase (GI:17016934) [Homo sapiens];
           contains 11 transmembrane domains
          Length = 540

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +2

Query: 341 TTLSELSVWQEAPIPGGMPGWML 409
           T +S+  +W  + +P G P W+L
Sbjct: 447 TYISQFHIWLRSNVPNGQPKWLL 469


>At5g04380.1 68418.m00430 S-adenosyl-L-methionine:carboxyl
           methyltransferase family protein similar to
           SAM:salicylic acid carboxyl methyltransferase (SAMT)
           [GI:6002712][Clarkia breweri] and to SAM:benzoic acid
           carboxyl methyltransferase
           (BAMT)[GI:9789277][Antirrhinum majus]
          Length = 385

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -3

Query: 621 VQHYADGVGADALGLRVAHHVVQHA 547
           V H+ D +  DAL  + AHHV QHA
Sbjct: 345 VAHFGDDI-IDALFHKYAHHVSQHA 368


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,541,808
Number of Sequences: 28952
Number of extensions: 283629
Number of successful extensions: 872
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)