Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0036.Seq
         (697 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom...    70   4e-13
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch...    31   0.12 
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar...    31   0.12 
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy...    31   0.12 
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa...    30   0.28 
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb...    29   0.48 
SPBC646.09c |int6|yin6|translation initiation factor eIF3e|Schiz...    29   0.48 
SPAC3F10.02c |trk1|sptrk|potassium ion transporter Trk1|Schizosa...    27   1.9  
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy...    27   2.6  
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    27   2.6  
SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces p...    27   3.4  
SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3 sub...    26   5.9  
SPBC56F2.06 |mug147||sequence orphan|Schizosaccharomyces pombe|c...    26   5.9  
SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme Fub2|Schiz...    25   7.8  
SPCC162.12 ||SPCC1753.06c|sequence orphan|Schizosaccharomyces po...    25   7.8  
SPBC27B12.12c |||CorA family magnesium ion transporter |Schizosa...    25   7.8  

>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 595

 Score = 69.7 bits (163), Expect = 4e-13
 Identities = 35/69 (50%), Positives = 45/69 (65%), Gaps = 2/69 (2%)
 Frame = -2

Query: 456 RAVTRIAVREARLKEIKQELLNCKKLQGYFEENPSDLAALRRD--KALHTVKVQQHLAHV 283
           RAVT +AV  AR  E+KQELL  +KL+ YF ENP +L +L  D   ++     Q+HL HV
Sbjct: 486 RAVTTVAVSAARAAELKQELLISEKLKSYFAENPDELLSLTHDTVSSVRLGHTQRHLRHV 545

Query: 282 PEYLLPAAL 256
           PEYLLP  +
Sbjct: 546 PEYLLPKGM 554



 Score = 34.7 bits (76), Expect = 0.013
 Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
 Frame = -1

Query: 697 FGYEDEIKELLSHLPKIYQAVLASATLSDDVLSFVS-IREKPLMDAVEQHLSNGFKGQKV 521
           FGY +++K L   LP+  Q+ L SATLS ++ S    +   P + AV+   ++G   Q V
Sbjct: 179 FGYNEDMKTLSRSLPRGTQSFLMSATLSKNIASLQKLVCRNPFILAVKDKEASGKLTQYV 238

Query: 520 LQ 515
           ++
Sbjct: 239 VK 240


>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 754

 Score = 31.5 bits (68), Expect = 0.12
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -1

Query: 694 GYEDEIKELLSHLPKIYQAVLASATLSDDV 605
           G+ DE+ E++   PK  Q +L SAT++D V
Sbjct: 421 GFADELNEIIQACPKSRQTMLFSATMTDKV 450


>SPAC1006.07 |||translation initiation factor
           eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 392

 Score = 31.5 bits (68), Expect = 0.12
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = -1

Query: 694 GYEDEIKELLSHLPKIYQAVLASATLSDDVL 602
           G++D+I ++   LP   Q VL SAT+  DVL
Sbjct: 177 GFKDQIYDIFQLLPPTAQVVLLSATMPQDVL 207


>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 606

 Score = 31.5 bits (68), Expect = 0.12
 Identities = 14/36 (38%), Positives = 24/36 (66%)
 Frame = -1

Query: 694 GYEDEIKELLSHLPKIYQAVLASATLSDDVLSFVSI 587
           G++  ++ ++S LPK  +  L SAT++D V SF+ I
Sbjct: 170 GFQRTLQSIISQLPKQRRTGLFSATMNDTVSSFLKI 205


>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
           related|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 394

 Score = 30.3 bits (65), Expect = 0.28
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = -1

Query: 694 GYEDEIKELLSHLPKIYQAVLASATLSDDVLSFVS 590
           G++++I ++  +LP   Q V+ SATL  DVL   +
Sbjct: 179 GFKEQIYDIYRYLPPGTQVVVVSATLPQDVLEMTN 213


>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 497

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 16/50 (32%), Positives = 28/50 (56%)
 Frame = -1

Query: 247 DIVEDQETVTEKPQVKKRKQNANFGSAKRHKYQARQNDPLKSFDVKKKKQ 98
           D+ E  ET++EKP  K++K        K+ K + +++    S +VKK K+
Sbjct: 446 DVEETVETISEKPSKKEKKDKK---EKKKEKSKKKRSADDASEEVKKSKK 492


>SPBC646.09c |int6|yin6|translation initiation factor
           eIF3e|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
 Frame = -2

Query: 417 KEIKQELLNCKK-LQGYFE--ENPSDLAALRRDKALHTVKVQQHLAHVPE 277
           + + QEL   ++ +QG     ENP  +AALR+DK  +   +Q+H    PE
Sbjct: 90  RSVLQELSELEEEVQGILGVLENPDLIAALRQDKGQNLQHLQEHYNITPE 139


>SPAC3F10.02c |trk1|sptrk|potassium ion transporter
           Trk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 841

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +3

Query: 558 STASIKGFSRIDTNDSTSS 614
           S  S+K FSR DT+DST++
Sbjct: 158 SPTSLKNFSRFDTHDSTNN 176


>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 578

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -1

Query: 694 GYEDEIKELLSHLP-KIYQAVLASATLSDDVLSFVSIREKP 575
           G+EDE+++++  LP +  Q +L SAT +  V     I  KP
Sbjct: 252 GFEDEMRQIMKILPSENRQTLLFSATQTTKVEDLARISLKP 292


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
           Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -1

Query: 646 YQAVLASATLSDDVLSFVSIREKPLMDAVEQHL 548
           ++++  S  +S DVL+F S   KP+ D +E+ L
Sbjct: 662 WKSMTTSFMMSQDVLNFSSYMRKPIRDYLEKIL 694


>SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 309

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -1

Query: 625 ATLSDDVLSFVSIREKPLMDAVEQ 554
           A+  DD+LSF+  RE+ +M+  +Q
Sbjct: 128 ASSRDDMLSFIDARERRIMETFQQ 151


>SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 804

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
 Frame = -1

Query: 268 SGCPANEDIVEDQETVT---EKPQVKKRKQNANFGSAKRHKYQARQNDPLKSFDVK 110
           S  P+NED VED++ +T    K   +K   +  F +    + +    D +  F++K
Sbjct: 226 SSKPSNEDNVEDKKDITNDSSKETAEKSSSDELFSAVVGLQEEEDDEDAVHLFEIK 281


>SPBC56F2.06 |mug147||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 411

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = -1

Query: 676 KELLSHLPKIYQAVLASATLSDDVLSFVSIREKPLMDAVEQHLSN-GFKGQKV 521
           K+L SH+P  Y     S++L     S +   EKPL     +H  N  FKG+ V
Sbjct: 12  KDLESHIPGAYSPAPPSSSLPTQNESNLQQSEKPL-----KHFENKKFKGEDV 59


>SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme
           Fub2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 628

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -1

Query: 247 DIVEDQETVTEKPQVKKRKQNANFGSAKRHKYQAR 143
           DI+ D +T +   Q+K+R  N       + K QA+
Sbjct: 590 DIIVDSKTSSHNKQLKRRPSNDTLTQEAKSKKQAK 624


>SPCC162.12 ||SPCC1753.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 451

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -1

Query: 373 LLRGEPIRSGSVKKGQGTAHCEGAATFGTCTRIPASGCPANEDIVED 233
           LL    + S +VKK Q   +  G++T  T  ++      +  DIVED
Sbjct: 266 LLANRKVPSTNVKKSQAELYDLGSSTSRTQQKLLIQRASSKFDIVED 312


>SPBC27B12.12c |||CorA family magnesium ion transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 803

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
 Frame = -1

Query: 361 EPIRSGSVKKGQGT-AHCEGAATFGTCTRIPASGCPANEDIVE--DQETVTEKPQVKKRK 191
           EP R+  V+  Q   A+ +   +  T    P++     E  +E  + E V +KP+ KKR 
Sbjct: 53  EPERNMQVQSSQHLEANVQSPVSSQTTYATPSAYAVPQESEIELHESEMVPQKPKKKKRS 112

Query: 190 QNANFGSAKR 161
           +     S K+
Sbjct: 113 RRNRKASRKK 122


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,707,472
Number of Sequences: 5004
Number of extensions: 56392
Number of successful extensions: 238
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 237
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)