Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0036.Seq
(697 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0997 + 29565311-29565664,29566134-29566298,29566572-295666... 67 1e-11
06_03_1255 + 28780181-28781172,28782065-28782932 32 0.50
07_03_1392 - 26238885-26239007,26239137-26239235,26239636-262397... 30 2.0
03_05_0052 - 20293197-20293310,20293938-20294024,20294133-202942... 30 2.0
01_06_0020 + 25630728-25631023,25631308-25631548,25631629-256317... 30 2.0
07_03_0734 + 21067747-21068569,21069678-21069812,21069967-210701... 29 3.5
07_03_0601 - 19872780-19873099,19873148-19873151,19874196-198743... 29 3.5
06_03_0287 - 19168685-19168735,19168847-19168884,19169517-191697... 29 3.5
12_01_0378 - 2946916-2947590 29 4.7
09_01_0128 + 1932721-1935181,1936099-1936256 28 6.2
01_06_0697 - 31301794-31302034,31302672-31303329,31303896-313040... 28 8.1
>03_05_0997 +
29565311-29565664,29566134-29566298,29566572-29566661,
29566763-29566891,29568141-29568272,29568904-29568969,
29569326-29569505,29569664-29569693,29569744-29569839,
29569959-29570096,29571060-29571142,29571447-29571484,
29571568-29571788,29572491-29572538
Length = 589
Score = 67.3 bits (157), Expect = 1e-11
Identities = 30/63 (47%), Positives = 44/63 (69%)
Frame = -2
Query: 456 RAVTRIAVREARLKEIKQELLNCKKLQGYFEENPSDLAALRRDKALHTVKVQQHLAHVPE 277
R+VT ++EAR ++IK E+LN +KL+ +F+ENP DL L+ DK L ++ HL VPE
Sbjct: 464 RSVTTRDIKEARRQDIKNEILNSEKLKAHFDENPRDLDLLKHDKLLSNKEIPAHLRDVPE 523
Query: 276 YLL 268
YL+
Sbjct: 524 YLI 526
>06_03_1255 + 28780181-28781172,28782065-28782932
Length = 619
Score = 31.9 bits (69), Expect = 0.50
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = -1
Query: 694 GYEDEIKELLSHLPKIYQAVLASATLSDDVLSFV-SIREKPLM 569
G+ED+I+E+ H Q +L SAT+ + + +F S KP++
Sbjct: 345 GFEDDIREVFDHFKAQRQTLLFSATMPEKIQNFAKSALVKPII 387
>07_03_1392 -
26238885-26239007,26239137-26239235,26239636-26239720,
26239825-26240028,26240360-26240682,26241904-26242575
Length = 501
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = -1
Query: 691 YEDEIKELLSHLPKIYQAVLASATLSDDVLSFVSI 587
+E++++ + LPK Q L SAT+SD++ S + +
Sbjct: 239 FEEDLRVIFGSLPKKRQTFLFSATISDNLRSLLEL 273
>03_05_0052 -
20293197-20293310,20293938-20294024,20294133-20294270,
20295009-20295128,20295236-20295343,20296053-20296133,
20296216-20296456,20297010-20297305
Length = 394
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -1
Query: 694 GYEDEIKELLSHLPKIYQAVLASATLSDDVLSFVS 590
G++D+I ++ +LP Q L SATL ++L S
Sbjct: 189 GFKDQIYDVYRYLPPELQVCLISATLPHEILEMTS 223
>01_06_0020 +
25630728-25631023,25631308-25631548,25631629-25631709,
25632109-25632216,25632329-25632448,25632806-25632943,
25633064-25633150,25633802-25633915
Length = 394
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -1
Query: 694 GYEDEIKELLSHLPKIYQAVLASATLSDDVLSFVS 590
G++D+I ++ +LP Q L SATL ++L S
Sbjct: 189 GFKDQIYDVYRYLPPELQVCLISATLPHEILEMTS 223
>07_03_0734 +
21067747-21068569,21069678-21069812,21069967-21070100,
21070182-21070449,21070472-21070709,21070787-21070937,
21071040-21071387
Length = 698
Score = 29.1 bits (62), Expect = 3.5
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Frame = -1
Query: 691 YEDEIKELLSHLPKIYQAVLASA----TLSDDVLSFVSIREKPLMDAVEQHLSNGFKGQK 524
Y+ +++L + LPK A L +A T+ D V + R A E + N F+G +
Sbjct: 41 YQSNLRQLSATLPKNASAALFAAGSLGTVPDIVYALALCRGDANASACESCVDNAFQGGQ 100
Query: 523 VLQKYN 506
L YN
Sbjct: 101 QLCPYN 106
>07_03_0601 -
19872780-19873099,19873148-19873151,19874196-19874357,
19874429-19874617,19874687-19875010,19875103-19875378,
19875436-19875478,19876110-19876188,19876473-19876555,
19876708-19876782,19877324-19877490,19877960-19878370
Length = 710
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/48 (29%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Frame = -1
Query: 691 YEDEIKELLSHLPKIYQAVLASATLSDDV--LSFVSIREKPLMDAVEQ 554
+++++ ++S LPK+ Q +L SAT + V L+ VS+++ + E+
Sbjct: 393 FQEQVDNVVSQLPKVRQTLLFSATQTKSVKDLARVSLKDPEYISVHEE 440
>06_03_0287 -
19168685-19168735,19168847-19168884,19169517-19169727,
19171461-19171643,19171879-19172028,19172161-19172256,
19172378-19172464,19172535-19172741,19172823-19173047,
19173150-19173261,19173397-19173453,19175522-19176882
Length = 925
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = -1
Query: 694 GYEDEIKELLSHLPKIYQAVLASATLSDDVLSFVSIREK 578
G+ +I+ +++ LPK Q +L SAT+ D+V I K
Sbjct: 626 GFRTDIERIVAALPKQRQTLLFSATVPDEVRQVCHIAMK 664
>12_01_0378 - 2946916-2947590
Length = 224
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +2
Query: 251 IGRAAGSRYSGTCAKCCCTFTVCSALSLL 337
+ RA G GTC C C F VC +++L
Sbjct: 3 MARAGGG---GTCCSCLCAFLVCIGVAVL 28
>09_01_0128 + 1932721-1935181,1936099-1936256
Length = 872
Score = 28.3 bits (60), Expect = 6.2
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Frame = -2
Query: 447 TRIAVREARLKEIKQEL-LNCKKLQGYFEENPSDLAALRRDKALHTVKVQQHLAHVPEYL 271
T+ ++ AR E +L L CK +Q PS++ AL +++ + ++ + + +
Sbjct: 127 TKALLKRARCFEALDKLDLACKDVQKVLSLEPSNVTALELSESIKELMEEKDVLLEKQIV 186
Query: 270 LPAA-LPMKILWKTRKQSPRNLKLRN 196
P A P IL K + + + K RN
Sbjct: 187 SPVAEEPKAILAKDKIKRKVSRKFRN 212
>01_06_0697 -
31301794-31302034,31302672-31303329,31303896-31304091,
31304169-31304396,31304497-31304925,31305043-31305249,
31305442-31305633,31305772-31306143
Length = 840
Score = 27.9 bits (59), Expect = 8.1
Identities = 28/101 (27%), Positives = 43/101 (42%), Gaps = 2/101 (1%)
Frame = -2
Query: 519 YKSIICTRRSGRVQIPLQRPWRAVTRIAVREARLKEIKQELLNC-KKLQGYFEENPSDLA 343
Y C ++ ++ + A +A+ E R E+ +L KLQ SD++
Sbjct: 329 YIGFSCLKKYLESELQKRYKEAAPATLALLEQRCSEVSMDLSRLDSKLQA-----TSDVS 383
Query: 342 ALRRDKALHTVKVQQHLAHVPEYLLPAALPMKILW-KTRKQ 223
LRR LH + HL + L AA P LW KT ++
Sbjct: 384 QLRRSAMLHAANICTHLRSL---LDGAADPAPELWGKTTEE 421
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,076,285
Number of Sequences: 37544
Number of extensions: 357040
Number of successful extensions: 1224
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1223
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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