Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0036.Seq
         (697 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    25   0.91 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   6.4  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   8.5  

>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 24.6 bits (51), Expect = 0.91
 Identities = 9/19 (47%), Positives = 16/19 (84%)
 Frame = -2

Query: 423 RLKEIKQELLNCKKLQGYF 367
           ++ E+++E+LN +KLQG F
Sbjct: 284 KISELEKEMLNGQKLQGPF 302


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 14/66 (21%), Positives = 27/66 (40%)
 Frame = -1

Query: 460  VARRHQDSSQRS*TQRDQTGAPQL*KVTRLLRGEPIRSGSVKKGQGTAHCEGAATFGTCT 281
            + ++ Q   Q+   Q+ Q    Q  +  +    E + +G  +   GT++  GAA      
Sbjct: 1207 MVQQQQQQQQQQQQQQQQQQQQQQQQQHQAREREGVGAGIAETSAGTSNSRGAAQMSKVP 1266

Query: 280  RIPASG 263
            R  + G
Sbjct: 1267 RDVSEG 1272


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 429 EARLKEIKQELLNCKKLQGY 370
           EAR +EIK+E+ +  K  GY
Sbjct: 164 EARFEEIKKEVSSYIKKIGY 183


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,018
Number of Sequences: 438
Number of extensions: 3876
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)