Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0035.Seq
         (729 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    28   1.2  
SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3 s...    27   3.6  
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    26   4.8  
SPAC1B3.06c |||UbiE family methyltransferase |Schizosaccharomyce...    26   6.3  
SPAC1B9.02c |sck1||serine/threonine protein kinase Sck1|Schizosa...    25   8.4  

>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = +2

Query: 206  VNTD*FEYNRLLQRIRSKPALYKGKYLTCYLSKMSFRRVL--SLNTKSI 346
            VN D   + +   RI  K ALY G+ L C+ S+  ++ +L  S++ K I
Sbjct: 2953 VNPDHLSFFKFTGRIIGK-ALYDGRLLDCHFSRAVYKHMLHRSVSVKDI 3000


>SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3
           subunit Alp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 821

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = -1

Query: 393 RQCDFWTIIGKSEKRIIDFVFNDKTLLNDILDK*QVKYLPLYNAGFDRIL 244
           R+C  WT + K + RI+  V ND   +N    K  ++ +  YN   D ++
Sbjct: 313 RRCIAWTQVAKLKLRILSSVVNDN--MNQENKKRLIQVVSKYNVHGDPLI 360


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
 Frame = +3

Query: 372 LSKSHIAGFDNSRLKSS--VTNIDLI*NVFIDSNSKKIQYSNLISTLT 509
           +S S ++   +S L SS  V++I+   +VFI S S  +QYS+   T T
Sbjct: 575 ISSSIVSSGSSSALSSSTIVSSINSSSSVFISSVSSSLQYSSSYVTET 622


>SPAC1B3.06c |||UbiE family methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 278

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = +3

Query: 474 KIQYSNLISTLTIDCRPCRSPVTCMAH*INYVSFTKRL 587
           ++ Y+N + +   +    R+P TC  + + YV  T R+
Sbjct: 7   QLYYANGVDSYIAETHAWRTPETCSTYMLKYVKKTDRI 44


>SPAC1B9.02c |sck1||serine/threonine protein kinase
           Sck1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 696

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -2

Query: 392 GNVTFGQLLVNQKNELLTLYSMTKL 318
           G  TFGQ+ + +KN+   +Y+M K+
Sbjct: 309 GKGTFGQVYLVRKNDTNRIYAMKKI 333


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,893,396
Number of Sequences: 5004
Number of extensions: 58410
Number of successful extensions: 136
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)