Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0035.Seq
         (729 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex det...    22   5.2  
DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex det...    22   5.2  
DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex det...    22   5.2  
DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    22   5.2  
DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex det...    22   5.2  
DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex det...    22   5.2  
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    22   5.2  
DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex det...    22   5.2  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   6.8  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   6.8  

>DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 459 DSNSKKIQYSNLISTLTIDCRPCRSPVTC 545
           ++N KK+QY N+I+   I+  P   P+ C
Sbjct: 102 NTNYKKLQYYNIIN---IEQIPVPVPIYC 127


>DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 459 DSNSKKIQYSNLISTLTIDCRPCRSPVTC 545
           ++N KK+QY N+I+   I+  P   P+ C
Sbjct: 102 NTNYKKLQYYNIIN---IEQIPVPVPIYC 127


>DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 459 DSNSKKIQYSNLISTLTIDCRPCRSPVTC 545
           ++N KK+QY N+I+   I+  P   P+ C
Sbjct: 102 NTNYKKLQYYNIIN---IEQIPVPVPIYC 127


>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 459 DSNSKKIQYSNLISTLTIDCRPCRSPVTC 545
           ++N KK+QY N+I+   I+  P   P+ C
Sbjct: 102 NTNYKKLQYYNIIN---IEQIPVPVPIYC 127


>DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 459 DSNSKKIQYSNLISTLTIDCRPCRSPVTC 545
           ++N KK+QY N+I+   I+  P   P+ C
Sbjct: 102 NTNYKKLQYYNIIN---IEQIPVPVPIYC 127


>DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 459 DSNSKKIQYSNLISTLTIDCRPCRSPVTC 545
           ++N KK+QY N+I+   I+  P   P+ C
Sbjct: 102 NTNYKKLQYYNIIN---IEQIPVPVPIYC 127


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 459 DSNSKKIQYSNLISTLTIDCRPCRSPVTC 545
           ++N KK+QY N+I+   I+  P   P+ C
Sbjct: 106 NTNYKKLQYYNIIN---IEQIPVPVPIYC 131


>DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 459 DSNSKKIQYSNLISTLTIDCRPCRSPVTC 545
           ++N KK+QY N+I+   I+  P   P+ C
Sbjct: 102 NTNYKKLQYYNIIN---IEQIPVPVPIYC 127


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
 Frame = -1

Query: 378 WTI---IGKSEKRIIDFVFNDKTLLNDILDK*QVKYLPLYN 265
           WT+   I  +   +++   ++K LLND+LD   V   P+ N
Sbjct: 4   WTLMAAIALAASGLVNGGSHEKRLLNDLLDTYNVLERPVGN 44


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 7/19 (36%), Positives = 15/19 (78%)
 Frame = +3

Query: 198 IDMSIQIDLNIIVSFKEYG 254
           +D+++ +DL+I  + +EYG
Sbjct: 676 VDVTLPLDLHIQNAIREYG 694


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,944
Number of Sequences: 438
Number of extensions: 3702
Number of successful extensions: 17
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)