Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0035.Seq
         (729 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g15660.1 68415.m01793 hypothetical protein                          28   7.3  
At1g54620.1 68414.m06229 invertase/pectin methylesterase inhibit...    27   9.6  

>At2g15660.1 68415.m01793 hypothetical protein 
          Length = 333

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = +3

Query: 456 IDSNSKKIQYSNLISTLTID-CRPCRSPVTCMA 551
           + S S+++Q+ N+I+T TID C P + P   M+
Sbjct: 238 VGSASQQLQHHNIINTPTIDMCEPRQHPFDFMS 270


>At1g54620.1 68414.m06229 invertase/pectin methylesterase inhibitor
           family protein contains Pfam profile PF04043: Plant
           invertase/pectin methylesterase inhibitor
          Length = 192

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -1

Query: 354 KRIIDFVFNDKTLLNDILDK*QVKYLPLYNAGFDRI 247
           KRI++ +FN++     +  K   K L LY+ G+D +
Sbjct: 91  KRIVEKIFNERKYKGRLSKKLLQKCLKLYSEGYDAL 126


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,483,635
Number of Sequences: 28952
Number of extensions: 278089
Number of successful extensions: 546
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 546
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)