Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0034.Seq
         (678 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.    24   5.1  
AY748847-1|AAV28193.1|  104|Anopheles gambiae cytochrome P450 pr...    23   6.7  
AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.            23   8.9  

>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
          Length = 1036

 Score = 23.8 bits (49), Expect = 5.1
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = -1

Query: 510 VSGLVIRVGGECLSLFSGDGSVTLDECGHDTSS 412
           V+G+V+ +GG C  L   D  ++  + G D+++
Sbjct: 47  VAGIVLGMGGNCKLLSRCDNVISYIKNGKDSAT 79


>AY748847-1|AAV28193.1|  104|Anopheles gambiae cytochrome P450
           protein.
          Length = 104

 Score = 23.4 bits (48), Expect = 6.7
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = +2

Query: 185 QIHDIV--LVGGSTRIPKVQKLLQDSLMERSSTNLLTL 292
           Q+H  +  + GGS R P ++ L +  L+ER     L L
Sbjct: 60  QVHQEIDSIFGGSDRAPTMRDLNEMKLLERCLKETLRL 97


>AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.
          Length = 3361

 Score = 23.0 bits (47), Expect = 8.9
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 203  VQYRGFEPYPSWHHGE 156
            + Y GFEPY   H G+
Sbjct: 1335 ISYYGFEPYERNHFGK 1350


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 695,687
Number of Sequences: 2352
Number of extensions: 13626
Number of successful extensions: 27
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 68159265
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)