Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0033.Seq
         (615 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyce...    29   0.71 
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ...    28   1.2  
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo...    27   2.8  
SPBP35G2.07 |ilv1||acetolactate synthase catalytic subunit|Schiz...    25   6.6  
SPBC800.14c |||DUF1772 family protein|Schizosaccharomyces pombe|...    25   8.7  
SPCC1223.12c |meu10||GPI anchored cell surface protein |Schizosa...    25   8.7  
SPCC1442.05c |||conserved fungal protein|Schizosaccharomyces pom...    25   8.7  

>SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 330

 Score = 28.7 bits (61), Expect = 0.71
 Identities = 18/58 (31%), Positives = 34/58 (58%)
 Frame = +3

Query: 276 TYSSKALMSGNVKNAQIASVKVQYLDKQKKLAVMNIEYN*VSEQLTLLSRKMRFNQKA 449
           T+S+    +GN  +A  AS+ + YLD QK L +   +++  +++ T   R++ F QK+
Sbjct: 97  TFSAPLNATGNFSSANPASIDLAYLDLQKLLTLP--DHSKETQEKTSSQREL-FEQKS 151


>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = +3

Query: 498 AYSCVQGDITKLAVDVIVNAANPSLMGSGGVDGAIHR 608
           AYS V  DI  + +    + +NPSL+G+  VD A HR
Sbjct: 431 AYSAVGKDILAIRLLNQFDLSNPSLLGTCVVDYAGHR 467


>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
           Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 739

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -3

Query: 379 FITASFFCLSRYCTFTEAICAF 314
           FI ++FFCLSRY  + +A   F
Sbjct: 202 FIISTFFCLSRYHVYHKAPFTF 223


>SPBP35G2.07 |ilv1||acetolactate synthase catalytic
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 669

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 6/34 (17%)
 Frame = +1

Query: 121 SLFFPFIAIAGSTVQGGVIHF------YGQIVEP 204
           SLF P   +A +  +GG+IHF       G++V+P
Sbjct: 382 SLFAPQARLAAAEERGGIIHFDISPKNIGKVVQP 415


>SPBC800.14c |||DUF1772 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 160

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 115 LGSLFFPFIAIAGSTVQG 168
           +G   FPF+AIA + VQG
Sbjct: 51  MGKKSFPFLAIANALVQG 68


>SPCC1223.12c |meu10||GPI anchored cell surface protein
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 416

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -2

Query: 125 KLPSIREFKKGLNIYSISSMISHP 54
           +LP +R+ K GLNI + SS  + P
Sbjct: 309 ELPKLRDVKGGLNIQTTSSDFTCP 332


>SPCC1442.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 177

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +3

Query: 471 EGVRRRYENAYSCVQGD 521
           EGV++ YENA   ++GD
Sbjct: 161 EGVQKHYENAVKKIKGD 177


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,559,427
Number of Sequences: 5004
Number of extensions: 53241
Number of successful extensions: 101
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)