Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0033.Seq
         (615 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0926 + 12448032-12448231,12448727-12448815,12449956-124500...    37   0.015
06_03_0781 - 24533949-24534330,24534666-24534817,24534901-245349...    30   1.7  
04_03_0978 - 21385894-21386097,21386330-21386791,21387580-21387786     30   1.7  
11_01_0795 + 6994597-6994774,6994812-6995092,6997289-6997335,699...    29   3.9  

>03_02_0926 +
           12448032-12448231,12448727-12448815,12449956-12450096,
           12450181-12450283,12450386-12450481,12450580-12450654,
           12450754-12450823,12451028-12451111
          Length = 285

 Score = 36.7 bits (81), Expect = 0.015
 Identities = 15/20 (75%), Positives = 17/20 (85%)
 Frame = +3

Query: 549 VNAANPSLMGSGGVDGAIHR 608
           VNAAN  ++G GGVDGAIHR
Sbjct: 128 VNAANERMLGGGGVDGAIHR 147


>06_03_0781 -
           24533949-24534330,24534666-24534817,24534901-24534999,
           24535127-24535302,24535983-24536292
          Length = 372

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
 Frame = -2

Query: 530 FGNITLHT*IRVFITPPYTF---WFLKCTAGFLVKS 432
           F   +L   +RVF +P Y F   WF  CT  FLVK+
Sbjct: 295 FAGTSLAMLVRVFWSPSYYFVLPWFSICTGVFLVKT 330


>04_03_0978 - 21385894-21386097,21386330-21386791,21387580-21387786
          Length = 290

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 19/84 (22%), Positives = 36/84 (42%)
 Frame = +3

Query: 315 NAQIASVKVQYLDKQKKLAVMNIEYN*VSEQLTLLSRKMRFNQKACCTLKKPEGVRRRYE 494
           NA + + + Q  +K++     NI+ + V   LTL+    + NQ+      K + +   Y+
Sbjct: 137 NADLENFRKQ-TEKERARFTSNIQVDVVQSLLTLVDSFEKVNQEITPETDKEQTISTSYQ 195

Query: 495 NAYSCVQGDITKLAVDVIVNAANP 566
             Y  +   +  L V V+     P
Sbjct: 196 GIYKQLVETLRSLGVGVVETVGKP 219


>11_01_0795 +
           6994597-6994774,6994812-6995092,6997289-6997335,
           6997550-6997772
          Length = 242

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 16/55 (29%), Positives = 25/55 (45%)
 Frame = +3

Query: 162 ARGRDPFLWPNCGTGM*RQHPVITRRNELPTNGSIPGKTYSSKALMSGNVKNAQI 326
           ARGR P  W  CG       P     N    +G  PG++Y+  A +  ++ +A +
Sbjct: 101 ARGRGPKFWVCCGI---CSLPSCGAENPAAKSGGAPGRSYTEVAKIGWSLVSAPV 152


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,171,774
Number of Sequences: 37544
Number of extensions: 355380
Number of successful extensions: 791
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 791
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)