Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0033.Seq
         (615 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34326| Best HMM Match : CRAL_TRIO (HMM E-Value=0.1)                 40   0.002
SB_48765| Best HMM Match : A1pp (HMM E-Value=3.5e-34)                  38   0.006
SB_28897| Best HMM Match : Trypsin (HMM E-Value=0)                     31   0.98 
SB_34912| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_54325| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  

>SB_34326| Best HMM Match : CRAL_TRIO (HMM E-Value=0.1)
          Length = 429

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 18/32 (56%), Positives = 20/32 (62%)
 Frame = +3

Query: 516 GDITKLAVDVIVNAANPSLMGSGGVDGAIHRA 611
           GDITKLA D IVN  N SL   G +   +HRA
Sbjct: 54  GDITKLAADAIVNTTNESLSDRGALSERVHRA 85


>SB_48765| Best HMM Match : A1pp (HMM E-Value=3.5e-34)
          Length = 354

 Score = 37.9 bits (84), Expect = 0.006
 Identities = 19/34 (55%), Positives = 21/34 (61%)
 Frame = +3

Query: 513 QGDITKLAVDVIVNAANPSLMGSGGVDGAIHRAG 614
           QGDIT    D +VNAAN  L+  GGV GAI   G
Sbjct: 9   QGDITNERADAVVNAANCDLIHGGGVAGAILAKG 42


>SB_28897| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 974

 Score = 30.7 bits (66), Expect = 0.98
 Identities = 18/46 (39%), Positives = 24/46 (52%)
 Frame = +3

Query: 435 FNQKACCTLKKPEGVRRRYENAYSCVQGDITKLAVDVIVNAANPSL 572
           FN K+   + K E VRR  EN      G  TKLA+  +++  NP L
Sbjct: 501 FNLKSNRIVDKEEAVRR-LENLQFQGGGTATKLALQAVIDTVNPEL 545


>SB_34912| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 554

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 13/48 (27%), Positives = 26/48 (54%)
 Frame = +3

Query: 195 CGTGM*RQHPVITRRNELPTNGSIPGKTYSSKALMSGNVKNAQIASVK 338
           CGT + + + VIT   ++P+     GK  S +   +G  K A+++ ++
Sbjct: 343 CGTTLSQMYQVITDVEKVPSTIKKAGKAVSMEIEANGQEKEAEVSQIR 390


>SB_54325| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 682

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +3

Query: 459 LKKPEGVRRRYENAYSCVQGDITKLAVDVIVNAANPS 569
           + K   V  +  +  S   GDIT L +D IVNA  P+
Sbjct: 60  ISKKHTVDIKLNDKVSLWTGDITALEIDAIVNAGYPN 96


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,552,754
Number of Sequences: 59808
Number of extensions: 405894
Number of successful extensions: 831
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)