Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0032.Seq
         (716 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    25   0.46 
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    24   1.4  
AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory recept...    24   1.4  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    23   3.3  
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    22   5.7  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    21   7.6  

>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 25.4 bits (53), Expect = 0.46
 Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
 Frame = -1

Query: 473 VSFRYCFFHIQMLIFNLVILLQAYSVNWIIIIKLYKTKAPF----LSCFFICHNTNRNNI 306
           V F   F  I + +F     LQA  + W  I  +     PF    +    +C++T    +
Sbjct: 250 VLFGNSFLSIVLALFRTAAELQASQIKWTRIAYMALASVPFIFDSIHLCDVCYST-IGTV 308

Query: 305 SKCTKILSQV 276
           SK  +++ Q+
Sbjct: 309 SKAGELIHQI 318


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +1

Query: 388 IQLTEYACNKITKLKIN 438
           I +T Y   KITKLKIN
Sbjct: 176 IAVTAYQNEKITKLKIN 192


>AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory receptor
           candidate 3 protein.
          Length = 398

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 12/42 (28%), Positives = 17/42 (40%)
 Frame = -1

Query: 473 VSFRYCFFHIQMLIFNLVILLQAYSVNWIIIIKLYKTKAPFL 348
           V F   F  I + +F     LQA  + W  I  +     PF+
Sbjct: 268 VLFGNSFLSIVLALFRTAAELQASQIKWTRIAYMALASVPFI 309


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 5/12 (41%), Positives = 11/12 (91%)
 Frame = -3

Query: 72  GFWVFHYNYIYN 37
           GFW+FH +++++
Sbjct: 665 GFWLFHCHFLFH 676


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 10/20 (50%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
 Frame = +3

Query: 354 RGFGFVEFDDYDPVDR-VCL 410
           R FGF+E DD   V+  VC+
Sbjct: 329 RTFGFLEIDDQGTVESFVCV 348


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 4/12 (33%), Positives = 11/12 (91%)
 Frame = -3

Query: 72  GFWVFHYNYIYN 37
           G+W+FH +++++
Sbjct: 665 GYWLFHCHFLFH 676


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,801
Number of Sequences: 336
Number of extensions: 3220
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19051215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)