Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0032.Seq
(716 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 80 3e-16
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 54 3e-08
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 49 8e-07
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 48 2e-06
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 46 7e-06
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 45 1e-05
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 45 1e-05
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 44 3e-05
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 43 5e-05
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 42 7e-05
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 42 9e-05
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 42 9e-05
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 41 2e-04
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 40 3e-04
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 40 4e-04
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 39 8e-04
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 38 0.002
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 38 0.002
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 36 0.008
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 34 0.018
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 34 0.018
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 32 0.071
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 31 0.12
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 31 0.12
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 31 0.16
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 31 0.22
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 31 0.22
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 30 0.38
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 29 0.66
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 29 0.66
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 29 0.88
SPBC2G5.04c |||COPII-coated vesicle component Erv41 |Schizosacch... 28 1.2
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 27 2.0
SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein Usp102|Schi... 27 2.0
SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component Sec9|Sc... 27 2.7
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces... 26 4.7
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy... 26 4.7
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 26 6.2
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 80.2 bits (189), Expect = 3e-16
Identities = 36/83 (43%), Positives = 58/83 (69%)
Frame = +1
Query: 4 SLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKR 183
SL++++EQ+GE++D VM+D T RS+GFGF+T+ V+E ++ H +DG+I++PKR
Sbjct: 178 SLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVM-SKEHHLDGKIIDPKR 236
Query: 184 AVPREEIKRPEASATVKKLFVAG 252
A+PREE ++ K+FV G
Sbjct: 237 AIPREEQEK------TAKMFVGG 253
Score = 57.2 bits (132), Expect = 2e-09
Identities = 24/72 (33%), Positives = 43/72 (59%)
Frame = +3
Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQH 440
D EE+ R +F+ FG ++ +++ DK+TG+ RGFGFV +++ V+ Q I +
Sbjct: 257 DCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMSQPYITIHGKP 316
Query: 441 LDVKKAISKTDM 476
++VK+A K +
Sbjct: 317 VEVKRATPKASL 328
Score = 54.8 bits (126), Expect = 1e-08
Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Frame = +1
Query: 10 KEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPH-KIDGRIVEPKRA 186
+ F+ Q+G ++D +M D T R +GFGF+TY V EA ++P+ I G+ VE KRA
Sbjct: 264 RNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAV-EATMSQPYITIHGKPVEVKRA 322
Query: 187 VPREEIK 207
P+ ++
Sbjct: 323 TPKASLR 329
Score = 53.6 bits (123), Expect = 3e-08
Identities = 23/68 (33%), Positives = 42/68 (61%)
Frame = +3
Query: 270 EEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQHLDV 449
++ LR+YF FG ++ +V+ D TG+ RGFGF+ F + V+ V + + H + + +D
Sbjct: 176 DDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEV-MSKEHHLDGKIIDP 234
Query: 450 KKAISKTD 473
K+AI + +
Sbjct: 235 KRAIPREE 242
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 53.6 bits (123), Expect = 3e-08
Identities = 26/70 (37%), Positives = 43/70 (61%), Gaps = 3/70 (4%)
Frame = +3
Query: 267 EEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQ-QNHQIKDQ-- 437
++EDL FS FG I+S V+ DKETG + F+EFD+ + V++ + QN I D
Sbjct: 256 QDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAYFKMQNVLIDDSRI 315
Query: 438 HLDVKKAISK 467
H+D +++++
Sbjct: 316 HVDFSQSVAR 325
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 48.8 bits (111), Expect = 8e-07
Identities = 19/41 (46%), Positives = 30/41 (73%)
Frame = +3
Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 383
D+ E+D+ FS FG V +++V DKETGK +GF F++++D
Sbjct: 41 DLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYED 81
Score = 34.7 bits (76), Expect = 0.013
Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Frame = +1
Query: 19 YEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPH-KIDGRIV 171
+ ++GE VD+ +++D +T +SKGF F+ Y A +N + K+ R+V
Sbjct: 51 FSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRSTVLAVDNMTNVKLLDRLV 102
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 47.6 bits (108), Expect = 2e-06
Identities = 21/43 (48%), Positives = 27/43 (62%)
Frame = +3
Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYD 389
D EE+LR+ F FG I V + DKETG+ +GF FV + D D
Sbjct: 212 DTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYDRD 254
Score = 33.9 bits (74), Expect = 0.023
Identities = 13/33 (39%), Positives = 23/33 (69%)
Frame = +1
Query: 7 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY 105
L++ + ++G I V + KD +T R+KGF F++Y
Sbjct: 218 LRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSY 250
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 45.6 bits (103), Expect = 7e-06
Identities = 22/53 (41%), Positives = 32/53 (60%)
Frame = +3
Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 419
D+ +E L + FS + ++V VV D+E GK RGFGFV F D D + ++N
Sbjct: 40 DVNDESLYQAFSEYPSLVKTKVVRDRE-GKTRGFGFVSFKDSDQFLKAWREKN 91
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 44.8 bits (101), Expect = 1e-05
Identities = 19/40 (47%), Positives = 28/40 (70%)
Frame = +3
Query: 270 EEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYD 389
+ DL+E+F G I V ++T ++TGK +GFGFV+F D D
Sbjct: 241 DADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPDID 280
Score = 29.5 bits (63), Expect = 0.50
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +1
Query: 1 SSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY 105
+ LKE + Q G+I V +M T + KGFGF+ +
Sbjct: 242 ADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDF 276
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 44.8 bits (101), Expect = 1e-05
Identities = 19/58 (32%), Positives = 35/58 (60%)
Frame = +3
Query: 255 KQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQI 428
+ ++++E L+ FS FG I S ++TD E GK +GFGFV + + ++ + N ++
Sbjct: 372 QDEVDDERLKAEFSAFGTITSAKIMTD-EQGKSKGFGFVCYTTPEEANKAVTEMNQRM 428
Score = 40.7 bits (91), Expect = 2e-04
Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Frame = +3
Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN-HQIKDQ 437
+I E++ + F FG I S+S+V D + K RGFGFV + +++ + + N + K +
Sbjct: 271 EITEQEFSDLFGQFGEITSLSLVKD-QNDKPRGFGFVNYANHECAQKAVDELNDKEYKGK 329
Query: 438 HLDVKKAISK 467
L V +A K
Sbjct: 330 KLYVGRAQKK 339
Score = 39.5 bits (88), Expect = 5e-04
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Frame = +3
Query: 264 IEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQ-IKDQH 440
I+ + L + FS FG I+S V D E G +G+GFV FD + + N + D+
Sbjct: 179 IDNKALHDTFSAFGKILSCKVAVD-ELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKK 237
Query: 441 LDVKKAISKTD 473
+ V +S+ +
Sbjct: 238 VYVGHHVSRRE 248
Score = 32.3 bits (70), Expect = 0.071
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Frame = +1
Query: 7 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHK-IDGRIVEPKR 183
LK + +G I +M D + K SKGFGF+ Y+ ++A + + G+ +
Sbjct: 380 LKAEFSAFGTITSAKIMTDEQGK-SKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVAL 438
Query: 184 AVPREEIKRPEASATVK 234
A R+E++R + A ++
Sbjct: 439 A-QRKEVRRSQLEAQIQ 454
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 43.6 bits (98), Expect = 3e-05
Identities = 19/50 (38%), Positives = 31/50 (62%)
Frame = +3
Query: 270 EEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 419
E+DL F G+I S+ + TD ++G+ +GFG+V F D D + C++ N
Sbjct: 379 EDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKK-CVEMN 427
Score = 39.9 bits (89), Expect = 4e-04
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Frame = +1
Query: 7 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGRIVEPKR 183
L + +E++G IV V+ D ++ RSKG+G++ + A N +IDGR+V
Sbjct: 279 LGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAANGTKEIDGRMVNLDL 338
Query: 184 AVPREEIKRPEA 219
+ PR +P A
Sbjct: 339 SNPRPANPQPYA 350
Score = 37.9 bits (84), Expect = 0.001
Identities = 12/40 (30%), Positives = 28/40 (70%)
Frame = +3
Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFD 380
+++++ L + F +G IV V+ D ++G+ +G+G+V+F+
Sbjct: 273 NVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFE 312
Score = 34.7 bits (76), Expect = 0.013
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = +1
Query: 31 GEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAVPR 195
G+I + + DP++ R KGFG++T+S + H I GR + PR
Sbjct: 390 GDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVEMNGHFIAGRPCRLDFSTPR 444
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 42.7 bits (96), Expect = 5e-05
Identities = 18/61 (29%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Frame = +1
Query: 7 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN-RPHKIDGRIVEPKR 183
L++ + ++G + V +M++P TK S+GFGF+++S A +N + GR++ ++
Sbjct: 117 LQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNLNSQEFYGRVLNVQK 176
Query: 184 A 186
A
Sbjct: 177 A 177
Score = 39.1 bits (87), Expect = 6e-04
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Frame = +3
Query: 264 IEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQ-IKDQH 440
++E++L++ FS FG + V ++ + T RGFGF+ F + N Q +
Sbjct: 112 MQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNLNSQEFYGRV 171
Query: 441 LDVKKA 458
L+V+KA
Sbjct: 172 LNVQKA 177
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 42.3 bits (95), Expect = 7e-05
Identities = 19/45 (42%), Positives = 27/45 (60%)
Frame = +3
Query: 267 EEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDR 401
+++DL +FS G I VVT+ ETG+ RG+GFV F + R
Sbjct: 17 KQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQR 61
Score = 41.5 bits (93), Expect = 1e-04
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Frame = +1
Query: 7 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN-RPHKIDGRIVEPKR 183
L F+ G I VV+ +P+T ++G+GF+T+S A + K+ GRI+
Sbjct: 21 LTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKELKNKKLHGRILRLDF 80
Query: 184 AVPRE 198
A PR+
Sbjct: 81 ATPRK 85
Score = 29.5 bits (63), Expect = 0.50
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 7 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY 105
L + Q+G + ++KDP T RS G GFI +
Sbjct: 293 LYNHFRQFGPLAYAKLVKDPATDRSLGRGFIKF 325
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 41.9 bits (94), Expect = 9e-05
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = +3
Query: 270 EEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQ 413
E+DL+ F FG + V + DK+T +GF +++F D D R L+
Sbjct: 336 EDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLE 383
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 41.9 bits (94), Expect = 9e-05
Identities = 17/54 (31%), Positives = 28/54 (51%)
Frame = +3
Query: 264 IEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQ 425
++E L + FS G +V V E G+ +G+GFV +D ++ D N+Q
Sbjct: 110 VDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEAMNNQ 163
Score = 29.5 bits (63), Expect = 0.50
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Frame = +1
Query: 7 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVD---EAQNNR 144
L + + G++V + + RSKG+GF++Y D EA NN+
Sbjct: 115 LYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEAMNNQ 163
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 40.7 bits (91), Expect = 2e-04
Identities = 17/62 (27%), Positives = 35/62 (56%)
Frame = +3
Query: 264 IEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQHL 443
+ E+L+ +F++ G++ V+++ DK TG +GF ++EF + V L + ++ L
Sbjct: 66 VTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNALLLNGSMLHERPL 125
Query: 444 DV 449
V
Sbjct: 126 KV 127
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 40.3 bits (90), Expect = 3e-04
Identities = 16/41 (39%), Positives = 25/41 (60%)
Frame = +3
Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 383
D+ E+ + E F+ G + + +V D ETG +G+GF EF D
Sbjct: 17 DVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFD 57
Score = 26.6 bits (56), Expect = 3.5
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +1
Query: 7 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY 105
+ E + Q G + ++ DP+T KG+GF +
Sbjct: 23 MTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEF 55
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 39.9 bits (89), Expect = 4e-04
Identities = 19/50 (38%), Positives = 28/50 (56%)
Frame = +3
Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCL 410
+ EEE L YF G+I V +V D +T +GF +++F D VD+ L
Sbjct: 280 EAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKALL 329
Score = 33.9 bits (74), Expect = 0.023
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +1
Query: 7 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKI-DGRIVEPKR 183
L ++ G I V +++DPKT KGF +I + VD+A K+ +GR + R
Sbjct: 286 LWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKALLLNEKKMPEGRTLRIMR 345
Query: 184 A 186
A
Sbjct: 346 A 346
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 38.7 bits (86), Expect = 8e-04
Identities = 16/40 (40%), Positives = 26/40 (65%)
Frame = +3
Query: 258 QDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 377
+D E L+ +F G + SV + TDK +G+++G+ FVEF
Sbjct: 101 KDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYAFVEF 140
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 37.5 bits (83), Expect = 0.002
Identities = 13/40 (32%), Positives = 26/40 (65%)
Frame = +3
Query: 270 EEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYD 389
E+ +R YFS FG ++ + + +++TG + + F+EF+ D
Sbjct: 118 EKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFIEFESLD 157
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 37.5 bits (83), Expect = 0.002
Identities = 17/43 (39%), Positives = 26/43 (60%)
Frame = +3
Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYD 389
D+ E DL ++F + S+ +V D T + RGFG+VEF+ D
Sbjct: 104 DLTENDLGDFFGE--GVTSIRLVIDPLTERSRGFGYVEFETAD 144
Score = 36.3 bits (80), Expect = 0.004
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = +1
Query: 28 WGE-IVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAVPREEI 204
+GE + + ++ DP T+RS+GFG++ + A + A + GR V A PR
Sbjct: 114 FGEGVTSIRLVIDPLTERSRGFGYVEFETADTLSAALALSGEDLMGRPVRITVAEPRRSF 173
Query: 205 KRPEAS 222
R E S
Sbjct: 174 AREERS 179
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 35.5 bits (78), Expect = 0.008
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = +3
Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 383
++ EE + + F G + S +V D E+G+ +G+GF E+ D
Sbjct: 15 EMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHD 55
Score = 26.2 bits (55), Expect = 4.7
Identities = 11/43 (25%), Positives = 21/43 (48%)
Frame = +1
Query: 13 EFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 141
+ ++Q G + ++ DP++ + KG+GF Y A N
Sbjct: 23 DIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAVRN 65
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 34.3 bits (75), Expect = 0.018
Identities = 20/79 (25%), Positives = 37/79 (46%)
Frame = +1
Query: 7 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 186
L+E + ++G I + P T+ SKG+GF+++S +A N ++G + KR
Sbjct: 437 LEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAINT----LNGVLFGKKRL 492
Query: 187 VPREEIKRPEASATVKKLF 243
KR + + +F
Sbjct: 493 FVNYAEKREDRKKRLSAIF 511
Score = 31.5 bits (68), Expect = 0.12
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +3
Query: 273 EDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 377
+ L E FS FG I S ++ + T +G+GFV F
Sbjct: 435 QQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSF 469
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 34.3 bits (75), Expect = 0.018
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Frame = +3
Query: 261 DIEEEDLREYF-STFGNIVSVSVVTDKETGKKRGFGFVEF-DDYDPVDRVCLQQNHQIKD 434
++ E D+ F S + + S ++TD +T RG+GFV F D+ D + Q D
Sbjct: 196 NVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQICGD 255
Query: 435 QHLDVKKAISKT 470
+ + V A K+
Sbjct: 256 RPIRVGLATPKS 267
Score = 27.5 bits (58), Expect = 2.0
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = +1
Query: 16 FYEQWGEIVDVVVMKDPKTKRSKGFGFITYS 108
F ++ +M DP+T S+G+GF+ ++
Sbjct: 206 FASRYNSCKSAKIMTDPQTNVSRGYGFVRFT 236
Score = 27.1 bits (57), Expect = 2.7
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +3
Query: 264 IEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 377
+ EE+L+ F FG IV V + K G GFV+F
Sbjct: 314 VSEEELKYLFQNFGEIVYVKIPPGK------GCGFVQF 345
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 32.3 bits (70), Expect = 0.071
Identities = 17/70 (24%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Frame = +1
Query: 1 SSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKI-DGRIVEP 177
+++K++++QWG ++ V V+KD + + F+ + +A + + I DGR +
Sbjct: 97 ATVKDYFQQWGPLLHVKVLKD---WLQRPYSFVQFQNTDDASKALSEAQNTILDGRHIRI 153
Query: 178 KRAVPREEIK 207
+RA I+
Sbjct: 154 ERAKVNRTIR 163
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 31.5 bits (68), Expect = 0.12
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +3
Query: 264 IEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQI 428
+ E L F FG I+SV++ KE R + FVEFD+ + N+ I
Sbjct: 17 VTESLLYNAFIPFGEIISVALHR-KEKAVDRSYAFVEFDEPEDAKEAMENMNYSI 70
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 31.5 bits (68), Expect = 0.12
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +3
Query: 270 EEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 383
+E+L Y + FG + S + D ET +G+GF F++
Sbjct: 309 DENLLLYTNRFGKVSSSKAIIDMETNLCKGYGFACFEE 346
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 31.1 bits (67), Expect = 0.16
Identities = 14/73 (19%), Positives = 37/73 (50%)
Frame = +1
Query: 7 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 186
++ F+ +G++ V + K + + KGFG++ + + A + ++ R++ +
Sbjct: 773 VETFFRDYGQVESVRIPK--RFNQHKGFGYVVMTTNQDAENALSAAGKQLGNRVLNVVLS 830
Query: 187 VPREEIKRPEASA 225
PRE +++ S+
Sbjct: 831 KPRESLEKTRVSS 843
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 30.7 bits (66), Expect = 0.22
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +3
Query: 270 EEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 377
+ L + FS FG+I+S + +G +G+GFV F
Sbjct: 397 KSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAF 432
Score = 30.3 bits (65), Expect = 0.29
Identities = 16/61 (26%), Positives = 32/61 (52%)
Frame = +1
Query: 1 SSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPK 180
S L++ + +G I+ ++ P + SKG+GF+ + Q A++ ++G +V K
Sbjct: 398 SQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAFRQIEAAVRAKDT----LNGMMVGKK 453
Query: 181 R 183
R
Sbjct: 454 R 454
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 30.7 bits (66), Expect = 0.22
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +1
Query: 7 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 132
L +F+EQ G + D +++D + RSKG ++ + V A
Sbjct: 256 LYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAA 297
Score = 29.9 bits (64), Expect = 0.38
Identities = 11/39 (28%), Positives = 25/39 (64%)
Frame = +3
Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 377
++ +ED++ F FG+I V + D + + +GFG++++
Sbjct: 350 NLTDEDVKAIFEPFGDIEFVHLQRD-DQNRSKGFGYIQY 387
Score = 29.9 bits (64), Expect = 0.38
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = +1
Query: 7 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY 105
+K +E +G+I V + +D + RSKGFG+I Y
Sbjct: 356 VKAIFEPFGDIEFVHLQRDDQN-RSKGFGYIQY 387
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 29.9 bits (64), Expect = 0.38
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +3
Query: 339 ETGKKRGFGFVEFDDYDPVDRVCLQQN-HQIKDQHLDVKKAISKTD 473
E + RGFGFV F + + R + N Q+ D L VK A+ + D
Sbjct: 253 EQRRGRGFGFVSFANAEDQSRAIEEMNGKQVGDLTLVVKSAVFRED 298
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 29.1 bits (62), Expect = 0.66
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = +3
Query: 234 KVVCSWTKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 377
K+ S ++ E+ + E FG+++S ++ + G +GF F EF
Sbjct: 311 KIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEF 358
>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 565
Score = 29.1 bits (62), Expect = 0.66
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = +3
Query: 252 TKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 377
T + +EE ++T + +V+++ +KET K R F F +F
Sbjct: 79 TPEILEEHIELALYATGAKVSTVTLIREKETQKSRCFAFAKF 120
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 28.7 bits (61), Expect = 0.88
Identities = 10/38 (26%), Positives = 24/38 (63%)
Frame = +3
Query: 270 EEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 383
+ +L + F+ G+++ + + TG+ +GFG V+F++
Sbjct: 293 DRNLLDLFTDIGSVIRARIAYEP-TGRSKGFGVVQFEN 329
>SPBC2G5.04c |||COPII-coated vesicle component Erv41
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 333
Score = 28.3 bits (60), Expect = 1.2
Identities = 18/54 (33%), Positives = 27/54 (50%)
Frame = -3
Query: 489 YPXQTCQFSILLFSHPNVDL*FGDFVASILCQLDHNHQTLQNQSPFSFLFLYLS 328
Y F L F+H +L FG++ +++ LD H N PF+F + YLS
Sbjct: 176 YGRSNIPFHSLNFTHYIEELSFGEYYPALVNALD-GHYGHANDHPFAFQY-YLS 227
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 27.5 bits (58), Expect = 2.0
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = +3
Query: 264 IEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFD 380
+ E LR +F +FG + + + + TG G + FD
Sbjct: 105 VTSEQLRYHFKSFGEVFDLDLKLNPYTGTSLGLCCISFD 143
>SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein
Usp102|Schizosaccharomyces pombe|chr 2|||Manual
Length = 249
Score = 27.5 bits (58), Expect = 2.0
Identities = 16/67 (23%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Frame = +3
Query: 279 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQ-QNHQIKDQHLDVKK 455
L F ++G ++ V ++T + RG FV FD+ + R Q + + + + ++
Sbjct: 46 LEHLFGSYGKVIDVQA---RKTLRMRGQAFVVFDNLENASRALKDLQGYPLYGKPMMIQY 102
Query: 456 AISKTDM 476
+ SK+D+
Sbjct: 103 SKSKSDI 109
>SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component
Sec9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 419
Score = 27.1 bits (57), Expect = 2.7
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 622 NQNPWDDNGGGNWSNQGYGDQGNWGSFGS 708
+ N ++DN N SN YG N+G++GS
Sbjct: 44 SSNSYNDN---NNSNSTYGSSNNYGNYGS 69
>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1441
Score = 26.2 bits (55), Expect = 4.7
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -2
Query: 622 SPSATLTVSLPLVKTTILIS 563
SP T TV+LPL K T+L S
Sbjct: 251 SPEQTSTVTLPLRKDTVLFS 270
>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 991
Score = 26.2 bits (55), Expect = 4.7
Identities = 11/29 (37%), Positives = 13/29 (44%)
Frame = +1
Query: 619 GNQNPWDDNGGGNWSNQGYGDQGNWGSFG 705
G Q PW NG SN Y +G +G
Sbjct: 921 GVQPPWSGNGNFPRSNASYNSRGGHEGYG 949
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 25.8 bits (54), Expect = 6.2
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +1
Query: 64 PKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAVPREE-IKRPEASATVKK 237
P+T+ S+ F F+ Y + ++A +++ GR +E V R E K+P S K
Sbjct: 41 PRTRTSRPFAFVEYEDSRDAEDAY----YEVHGRRLERGGGVLRVEWAKQPPPSGPGSK 95
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,698,593
Number of Sequences: 5004
Number of extensions: 51273
Number of successful extensions: 248
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 245
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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