Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0032.Seq
         (716 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY957503-1|AAY41942.1|  596|Anopheles gambiae vasa-like protein ...    29   0.19 
U02964-1|AAA03444.1|  376|Anopheles gambiae actin 1D protein.          23   7.2  
U02933-1|AAA56882.1|  376|Anopheles gambiae actin 1D protein.          23   7.2  
U02930-1|AAA56881.1|  376|Anopheles gambiae actin 1D protein.          23   7.2  
AB090819-1|BAC57913.1|  400|Anopheles gambiae gag-like protein p...    23   9.5  

>AY957503-1|AAY41942.1|  596|Anopheles gambiae vasa-like protein
           protein.
          Length = 596

 Score = 28.7 bits (61), Expect = 0.19
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +1

Query: 601 QSRWHWGNQNPWDDNGGGNWSNQGYGDQGNWGSFGSG 711
           QS   +G++   +DNGG    + GYG  G  G  G G
Sbjct: 40  QSNNAFGDEYQSNDNGGYGGGDDGYGGGGRGGRGGRG 76



 Score = 23.0 bits (47), Expect = 9.5
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +1

Query: 646 GGGNWSNQGYGDQGNWGSFGSG 711
           GGG    +G G +   G FG G
Sbjct: 76  GGGRGRGRGRGGRDGGGGFGGG 97


>U02964-1|AAA03444.1|  376|Anopheles gambiae actin 1D protein.
          Length = 376

 Score = 23.4 bits (48), Expect = 7.2
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -1

Query: 329 HNTNRNNISKCTKILSQVFFFNVLLSPATNNF 234
           H T  N+I KC   + +  + N +LS  T  +
Sbjct: 276 HETTYNSIMKCDVDIRKDLYANTVLSGGTTMY 307


>U02933-1|AAA56882.1|  376|Anopheles gambiae actin 1D protein.
          Length = 376

 Score = 23.4 bits (48), Expect = 7.2
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -1

Query: 329 HNTNRNNISKCTKILSQVFFFNVLLSPATNNF 234
           H T  N+I KC   + +  + N +LS  T  +
Sbjct: 276 HETTYNSIMKCDVDIRKDLYANTVLSGGTTMY 307


>U02930-1|AAA56881.1|  376|Anopheles gambiae actin 1D protein.
          Length = 376

 Score = 23.4 bits (48), Expect = 7.2
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -1

Query: 329 HNTNRNNISKCTKILSQVFFFNVLLSPATNNF 234
           H T  N+I KC   + +  + N +LS  T  +
Sbjct: 276 HETTYNSIMKCDVDIRKDLYANTVLSGGTTMY 307


>AB090819-1|BAC57913.1|  400|Anopheles gambiae gag-like protein
           protein.
          Length = 400

 Score = 23.0 bits (47), Expect = 9.5
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +1

Query: 130 AQNNRPHKIDGRIVEPKRAVPREEIKRPEA 219
           AQ   P    G+  +PK+   +  + +PEA
Sbjct: 143 AQRETPKSSGGQSKQPKKKKKKRSLPKPEA 172


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 662,463
Number of Sequences: 2352
Number of extensions: 12606
Number of successful extensions: 55
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 72765525
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)