Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0032.Seq
         (716 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.              23   2.2  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   5.0  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   5.0  

>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -1

Query: 329 HNTNRNNISKCTKILSQVFFFNVLLSPATNNF 234
           H T  N+I KC   + +  + N +LS  T  +
Sbjct: 50  HETTYNSIMKCDVDIRKDLYANTVLSGGTTMY 81


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 387 HNHQTLQNQSPFSFLFLYLSQH*QKQY 307
           H+HQ L  QSP+    +Y +   +K+Y
Sbjct: 77  HHHQVLYQQSPY---LMYENPDEEKRY 100


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 355 LFFPVSLSVTTLTETIFPNV 296
           +F PVS   TT+   I+P V
Sbjct: 829 MFLPVSYMSTTMAGVIYPPV 848


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,412
Number of Sequences: 438
Number of extensions: 3320
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)