Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0032.Seq
(716 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 77 1e-14
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 70 2e-12
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 70 2e-12
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 69 2e-12
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 69 2e-12
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 69 2e-12
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 69 2e-12
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 68 7e-12
At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein... 66 3e-11
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 66 3e-11
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 66 3e-11
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 64 7e-11
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 64 1e-10
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 63 2e-10
At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing ... 61 6e-10
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 60 1e-09
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 59 3e-09
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 56 2e-08
At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing ... 54 7e-08
At2g21690.1 68415.m02580 RNA-binding protein, putative similar t... 54 1e-07
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 53 2e-07
At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing ... 52 3e-07
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 52 3e-07
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 52 5e-07
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 52 5e-07
At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing ... 52 5e-07
At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing ... 52 5e-07
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 51 7e-07
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 51 7e-07
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 50 1e-06
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 50 2e-06
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 50 2e-06
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 50 2e-06
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 50 2e-06
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 50 2e-06
At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing ... 50 2e-06
At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing ... 50 2e-06
At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing ... 50 2e-06
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 49 3e-06
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 49 3e-06
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 49 4e-06
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 49 4e-06
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 48 5e-06
At1g71800.1 68414.m08298 cleavage stimulation factor, putative s... 48 6e-06
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 48 8e-06
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 48 8e-06
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 48 8e-06
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 47 1e-05
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 47 1e-05
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 47 1e-05
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 47 1e-05
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 47 1e-05
At2g37510.1 68415.m04600 RNA-binding protein, putative similar t... 46 2e-05
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 46 2e-05
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 46 3e-05
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 46 3e-05
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 46 3e-05
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 46 3e-05
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 45 4e-05
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 45 4e-05
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 45 6e-05
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 45 6e-05
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 45 6e-05
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 45 6e-05
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 44 8e-05
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ... 44 8e-05
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 44 8e-05
At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing ... 44 1e-04
At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing ... 44 1e-04
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 44 1e-04
At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ... 44 1e-04
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 43 2e-04
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 43 2e-04
At5g51300.2 68418.m06360 splicing factor-related contains simila... 43 2e-04
At5g51300.1 68418.m06359 splicing factor-related contains simila... 43 2e-04
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 43 2e-04
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 43 2e-04
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 43 2e-04
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 43 2e-04
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 43 2e-04
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 42 3e-04
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 42 3e-04
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 42 3e-04
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 42 3e-04
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 42 3e-04
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 42 3e-04
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 42 4e-04
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 42 5e-04
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 42 5e-04
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 41 7e-04
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 41 7e-04
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 41 7e-04
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro... 41 7e-04
At4g24270.2 68417.m03484 RNA recognition motif (RRM)-containing ... 41 0.001
At4g24270.1 68417.m03483 RNA recognition motif (RRM)-containing ... 41 0.001
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 41 0.001
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 40 0.001
At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ... 40 0.001
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 40 0.001
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 40 0.001
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 40 0.001
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 40 0.002
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 40 0.002
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 40 0.002
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 40 0.002
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 40 0.002
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 40 0.002
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 40 0.002
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 39 0.003
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 39 0.003
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 39 0.003
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 39 0.003
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 39 0.003
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 39 0.003
At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ... 39 0.003
At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28... 39 0.004
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 39 0.004
At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonu... 39 0.004
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 38 0.005
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 38 0.005
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 38 0.005
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 38 0.005
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 38 0.005
At5g65260.1 68418.m08209 polyadenylate-binding protein family pr... 38 0.007
At5g41690.1 68418.m05067 polyadenylate-binding protein, putative... 38 0.009
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 38 0.009
At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing ... 38 0.009
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 38 0.009
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 38 0.009
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 37 0.012
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 37 0.012
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 37 0.012
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 37 0.015
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 37 0.015
At5g51120.1 68418.m06339 polyadenylate-binding protein, putative... 36 0.020
At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing ... 36 0.020
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 36 0.020
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 36 0.020
At1g51510.1 68414.m05797 RNA-binding protein, putative similar t... 36 0.020
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 36 0.020
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 36 0.027
At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) ide... 36 0.035
At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) ide... 36 0.035
At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) ide... 36 0.035
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 35 0.047
At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing ... 35 0.062
At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ... 35 0.062
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 35 0.062
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 35 0.062
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 34 0.082
At3g51950.1 68416.m05698 zinc finger (CCCH-type) family protein ... 34 0.082
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (... 34 0.082
At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing ... 34 0.082
At1g45100.1 68414.m05170 polyadenylate-binding protein, putative... 34 0.082
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 34 0.11
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 34 0.11
At2g47310.1 68415.m05906 flowering time control protein-related ... 34 0.11
At5g10350.2 68418.m01201 polyadenylate-binding protein family pr... 33 0.14
At5g10350.1 68418.m01200 polyadenylate-binding protein family pr... 33 0.14
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 33 0.14
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 33 0.14
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 33 0.14
At5g12440.1 68418.m01462 zinc finger (CCCH-type) family protein ... 33 0.19
At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containi... 33 0.19
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 33 0.19
At3g63450.1 68416.m07144 RNA recognition motif (RRM)-containing ... 33 0.25
At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing ... 33 0.25
At2g24350.1 68415.m02910 RNA recognition motif (RRM)-containing ... 32 0.33
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 32 0.33
At5g04290.1 68418.m00422 KOW domain-containing transcription fac... 32 0.44
At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing ... 32 0.44
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 31 0.58
At5g09830.1 68418.m01137 BolA-like family protein contains Pfam ... 31 0.58
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 31 0.58
At4g32720.1 68417.m04657 RNA recognition motif (RRM)-containing ... 31 0.76
At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ... 31 0.76
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 31 0.76
At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing ... 30 1.3
At2g30260.1 68415.m03684 small nuclear ribonucleoprotein U2B, pu... 30 1.3
At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing ... 30 1.8
At1g75550.1 68414.m08780 glycine-rich protein 30 1.8
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 29 2.3
At3g21100.1 68416.m02667 RNA recognition motif (RRM)-containing ... 29 2.3
At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) famil... 29 2.3
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 29 2.3
At1g65440.1 68414.m07424 glycine-rich protein 29 2.3
At5g13655.1 68418.m01588 hypothetical protein 29 3.1
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu... 29 3.1
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu... 29 3.1
At1g72800.1 68414.m08416 nuM1-related contains similarity with n... 29 3.1
At1g41855.1 68414.m04833 hypothetical protein 29 3.1
At4g38440.1 68417.m05432 expressed protein 29 4.1
At1g60200.1 68414.m06781 splicing factor PWI domain-containing p... 29 4.1
At5g64370.1 68418.m08086 beta-ureidopropionase, putative / beta-... 28 5.4
At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing ... 28 5.4
At2g15770.1 68415.m01808 glycine-rich protein contains a domain ... 28 7.1
At5g66400.1 68418.m08374 dehydrin (RAB18) nearly identical to SP... 27 9.4
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 27 9.4
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 77.0 bits (181), Expect = 1e-14
Identities = 36/73 (49%), Positives = 51/73 (69%)
Frame = +3
Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQH 440
D +E LREYFS FG ++ V+V+ +K TG+ RGFGFV F D +DRV LQ H I ++
Sbjct: 16 DTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRV-LQDKHHIDNRD 74
Query: 441 LDVKKAISKTDMS 479
+DVK+A+S+ + S
Sbjct: 75 VDVKRAMSREEQS 87
Score = 60.5 bits (140), Expect = 1e-09
Identities = 26/65 (40%), Positives = 43/65 (66%)
Frame = +1
Query: 7 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 186
L+E++ +GE++ V VM++ T R +GFGF+ +S ++D ++ H ID R V+ KRA
Sbjct: 22 LREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVLQDK-HHIDNRDVDVKRA 80
Query: 187 VPREE 201
+ REE
Sbjct: 81 MSREE 85
Score = 57.6 bits (133), Expect = 8e-09
Identities = 24/68 (35%), Positives = 40/68 (58%)
Frame = +3
Query: 264 IEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQHL 443
+ ++ R YF T+G + ++ D+ T + RGFGFV FD D VD V + H + + +
Sbjct: 121 LTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLHKTFHDLNGKQV 180
Query: 444 DVKKAISK 467
+VK+A+ K
Sbjct: 181 EVKRALPK 188
Score = 55.2 bits (127), Expect = 4e-08
Identities = 22/63 (34%), Positives = 40/63 (63%)
Frame = +1
Query: 10 KEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAV 189
+ ++E +G + D V+M D T+R +GFGF+++ VD + H ++G+ VE KRA+
Sbjct: 127 RAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLHKTFHDLNGKQVEVKRAL 186
Query: 190 PRE 198
P++
Sbjct: 187 PKD 189
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 69.7 bits (163), Expect = 2e-12
Identities = 33/74 (44%), Positives = 46/74 (62%)
Frame = +1
Query: 1 SSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPK 180
S K ++EQ+G DVVVM D T+R +GFGFITY V++ H+++G++VE K
Sbjct: 122 SDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVK 181
Query: 181 RAVPREEIKRPEAS 222
RAVP+E P S
Sbjct: 182 RAVPKELSPGPSRS 195
Score = 66.9 bits (156), Expect = 1e-11
Identities = 28/65 (43%), Positives = 45/65 (69%)
Frame = +1
Query: 7 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 186
LKE++ +GE+++ V++KD T R++GFGF+ ++ V E H IDGR+VE K+A
Sbjct: 22 LKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADP-AVAEIVITEKHNIDGRLVEAKKA 80
Query: 187 VPREE 201
VPR++
Sbjct: 81 VPRDD 85
Score = 64.5 bits (150), Expect = 7e-11
Identities = 28/73 (38%), Positives = 45/73 (61%)
Frame = +3
Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQH 440
D EE L+EYFS+FG ++ ++ D+ TG+ RGFGFV F D V + + + H I +
Sbjct: 16 DTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFAD-PAVAEIVITEKHNIDGRL 74
Query: 441 LDVKKAISKTDMS 479
++ KKA+ + D +
Sbjct: 75 VEAKKAVPRDDQN 87
Score = 60.1 bits (139), Expect = 1e-09
Identities = 25/78 (32%), Positives = 43/78 (55%)
Frame = +3
Query: 234 KVVCSWTKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQ 413
K+ + E D + YF FG V V+ D T + RGFGF+ +D + V++V L+
Sbjct: 109 KIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLK 168
Query: 414 QNHQIKDQHLDVKKAISK 467
H++ + ++VK+A+ K
Sbjct: 169 TFHELNGKMVEVKRAVPK 186
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 69.7 bits (163), Expect = 2e-12
Identities = 33/74 (44%), Positives = 46/74 (62%)
Frame = +1
Query: 1 SSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPK 180
S K ++EQ+G DVVVM D T+R +GFGFITY V++ H+++G++VE K
Sbjct: 122 SDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVK 181
Query: 181 RAVPREEIKRPEAS 222
RAVP+E P S
Sbjct: 182 RAVPKELSPGPSRS 195
Score = 66.9 bits (156), Expect = 1e-11
Identities = 28/65 (43%), Positives = 45/65 (69%)
Frame = +1
Query: 7 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 186
LKE++ +GE+++ V++KD T R++GFGF+ ++ V E H IDGR+VE K+A
Sbjct: 22 LKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADP-AVAEIVITEKHNIDGRLVEAKKA 80
Query: 187 VPREE 201
VPR++
Sbjct: 81 VPRDD 85
Score = 64.5 bits (150), Expect = 7e-11
Identities = 28/73 (38%), Positives = 45/73 (61%)
Frame = +3
Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQH 440
D EE L+EYFS+FG ++ ++ D+ TG+ RGFGFV F D V + + + H I +
Sbjct: 16 DTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFAD-PAVAEIVITEKHNIDGRL 74
Query: 441 LDVKKAISKTDMS 479
++ KKA+ + D +
Sbjct: 75 VEAKKAVPRDDQN 87
Score = 60.1 bits (139), Expect = 1e-09
Identities = 25/78 (32%), Positives = 43/78 (55%)
Frame = +3
Query: 234 KVVCSWTKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQ 413
K+ + E D + YF FG V V+ D T + RGFGF+ +D + V++V L+
Sbjct: 109 KIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLK 168
Query: 414 QNHQIKDQHLDVKKAISK 467
H++ + ++VK+A+ K
Sbjct: 169 TFHELNGKMVEVKRAVPK 186
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 69.3 bits (162), Expect = 2e-12
Identities = 30/63 (47%), Positives = 44/63 (69%)
Frame = +1
Query: 10 KEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAV 189
K +++Q+G I DVVVM D T+R +GFGFIT+ VD + H+++G++VE KRAV
Sbjct: 127 KNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVKRAV 186
Query: 190 PRE 198
P+E
Sbjct: 187 PKE 189
Score = 65.3 bits (152), Expect = 4e-11
Identities = 30/78 (38%), Positives = 44/78 (56%)
Frame = +3
Query: 234 KVVCSWTKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQ 413
K+ I EE+ + YF FG I V V+ D T + RGFGF+ FD D VDRV +
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHK 170
Query: 414 QNHQIKDQHLDVKKAISK 467
H++ + ++VK+A+ K
Sbjct: 171 TFHELNGKLVEVKRAVPK 188
Score = 62.1 bits (144), Expect = 4e-10
Identities = 28/71 (39%), Positives = 45/71 (63%)
Frame = +3
Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQH 440
D +EE LR+YFS +G++V ++ D+ TG+ RGFGF+ F D +RV + H I +
Sbjct: 16 DTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERV-IMDKHIIDGRT 74
Query: 441 LDVKKAISKTD 473
++ KKA+ + D
Sbjct: 75 VEAKKAVPRDD 85
Score = 61.3 bits (142), Expect = 6e-10
Identities = 27/65 (41%), Positives = 44/65 (67%)
Frame = +1
Query: 7 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 186
L++++ +G++V+ V+M+D T R++GFGFI ++ V E H IDGR VE K+A
Sbjct: 22 LRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADP-CVSERVIMDKHIIDGRTVEAKKA 80
Query: 187 VPREE 201
VPR++
Sbjct: 81 VPRDD 85
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 69.3 bits (162), Expect = 2e-12
Identities = 30/63 (47%), Positives = 44/63 (69%)
Frame = +1
Query: 10 KEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAV 189
K +++Q+G I DVVVM D T+R +GFGFIT+ VD + H+++G++VE KRAV
Sbjct: 127 KNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVKRAV 186
Query: 190 PRE 198
P+E
Sbjct: 187 PKE 189
Score = 65.3 bits (152), Expect = 4e-11
Identities = 30/78 (38%), Positives = 44/78 (56%)
Frame = +3
Query: 234 KVVCSWTKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQ 413
K+ I EE+ + YF FG I V V+ D T + RGFGF+ FD D VDRV +
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHK 170
Query: 414 QNHQIKDQHLDVKKAISK 467
H++ + ++VK+A+ K
Sbjct: 171 TFHELNGKLVEVKRAVPK 188
Score = 62.1 bits (144), Expect = 4e-10
Identities = 28/71 (39%), Positives = 45/71 (63%)
Frame = +3
Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQH 440
D +EE LR+YFS +G++V ++ D+ TG+ RGFGF+ F D +RV + H I +
Sbjct: 16 DTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERV-IMDKHIIDGRT 74
Query: 441 LDVKKAISKTD 473
++ KKA+ + D
Sbjct: 75 VEAKKAVPRDD 85
Score = 61.3 bits (142), Expect = 6e-10
Identities = 27/65 (41%), Positives = 44/65 (67%)
Frame = +1
Query: 7 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 186
L++++ +G++V+ V+M+D T R++GFGFI ++ V E H IDGR VE K+A
Sbjct: 22 LRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADP-CVSERVIMDKHIIDGRTVEAKKA 80
Query: 187 VPREE 201
VPR++
Sbjct: 81 VPRDD 85
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 69.3 bits (162), Expect = 2e-12
Identities = 30/63 (47%), Positives = 44/63 (69%)
Frame = +1
Query: 10 KEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAV 189
K +++Q+G I DVVVM D T+R +GFGFIT+ VD + H+++G++VE KRAV
Sbjct: 127 KNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVKRAV 186
Query: 190 PRE 198
P+E
Sbjct: 187 PKE 189
Score = 65.3 bits (152), Expect = 4e-11
Identities = 30/78 (38%), Positives = 44/78 (56%)
Frame = +3
Query: 234 KVVCSWTKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQ 413
K+ I EE+ + YF FG I V V+ D T + RGFGF+ FD D VDRV +
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHK 170
Query: 414 QNHQIKDQHLDVKKAISK 467
H++ + ++VK+A+ K
Sbjct: 171 TFHELNGKLVEVKRAVPK 188
Score = 62.1 bits (144), Expect = 4e-10
Identities = 28/71 (39%), Positives = 45/71 (63%)
Frame = +3
Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQH 440
D +EE LR+YFS +G++V ++ D+ TG+ RGFGF+ F D +RV + H I +
Sbjct: 16 DTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERV-IMDKHIIDGRT 74
Query: 441 LDVKKAISKTD 473
++ KKA+ + D
Sbjct: 75 VEAKKAVPRDD 85
Score = 61.3 bits (142), Expect = 6e-10
Identities = 27/65 (41%), Positives = 44/65 (67%)
Frame = +1
Query: 7 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 186
L++++ +G++V+ V+M+D T R++GFGFI ++ V E H IDGR VE K+A
Sbjct: 22 LRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADP-CVSERVIMDKHIIDGRTVEAKKA 80
Query: 187 VPREE 201
VPR++
Sbjct: 81 VPRDD 85
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 69.3 bits (162), Expect = 2e-12
Identities = 30/66 (45%), Positives = 45/66 (68%)
Frame = +1
Query: 1 SSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPK 180
+ K +++Q+G I DVVVM D T+R +GFGFIT+ VD + H+++G++VE K
Sbjct: 136 AEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFHELNGKMVEVK 195
Query: 181 RAVPRE 198
RAVP+E
Sbjct: 196 RAVPKE 201
Score = 62.5 bits (145), Expect = 3e-10
Identities = 26/65 (40%), Positives = 47/65 (72%)
Frame = +1
Query: 7 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 186
L+E++ ++G++V+ V+M+D T R++GFGFI ++ + + ++ H IDGR VE K+A
Sbjct: 31 LQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVIMDK-HIIDGRTVEAKKA 89
Query: 187 VPREE 201
VPR++
Sbjct: 90 VPRDD 94
Score = 61.3 bits (142), Expect = 6e-10
Identities = 27/71 (38%), Positives = 44/71 (61%)
Frame = +3
Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQH 440
D +EE L+EYF +G++V ++ D+ TG+ RGFGF+ F D +RV + H I +
Sbjct: 25 DTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERV-IMDKHIIDGRT 83
Query: 441 LDVKKAISKTD 473
++ KKA+ + D
Sbjct: 84 VEAKKAVPRDD 94
Score = 59.7 bits (138), Expect = 2e-09
Identities = 27/78 (34%), Positives = 42/78 (53%)
Frame = +3
Query: 234 KVVCSWTKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQ 413
K+ I E + + YF FG I V V+ D T + RGFGF+ FD + VD V +
Sbjct: 123 KIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHK 182
Query: 414 QNHQIKDQHLDVKKAISK 467
H++ + ++VK+A+ K
Sbjct: 183 TFHELNGKMVEVKRAVPK 200
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 67.7 bits (158), Expect = 7e-12
Identities = 31/71 (43%), Positives = 48/71 (67%)
Frame = +3
Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQH 440
+ +E+ LRE+F+ +G + V+ DK TG+ RGFGFV F D +DRV LQ+ H I +
Sbjct: 16 ETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRV-LQEKHSIDTRE 74
Query: 441 LDVKKAISKTD 473
+DVK+A+S+ +
Sbjct: 75 VDVKRAMSREE 85
Score = 63.3 bits (147), Expect = 2e-10
Identities = 25/68 (36%), Positives = 43/68 (63%)
Frame = +3
Query: 264 IEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQHL 443
+ +E+ R+YF +G + V+++ D+ T + RGFGFV FD D VD V + H + + +
Sbjct: 121 LTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQV 180
Query: 444 DVKKAISK 467
+VK+A+ K
Sbjct: 181 EVKRALPK 188
Score = 57.6 bits (133), Expect = 8e-09
Identities = 22/63 (34%), Positives = 39/63 (61%)
Frame = +1
Query: 10 KEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAV 189
++++E +G + DV +M D T R +GFGF+++ VD + H + G+ VE KRA+
Sbjct: 127 RQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQVEVKRAL 186
Query: 190 PRE 198
P++
Sbjct: 187 PKD 189
Score = 56.8 bits (131), Expect = 1e-08
Identities = 26/65 (40%), Positives = 40/65 (61%)
Frame = +1
Query: 7 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 186
L+E + +GE+ +VM+D T R +GFGF+ +S ++D + H ID R V+ KRA
Sbjct: 22 LREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQEK-HSIDTREVDVKRA 80
Query: 187 VPREE 201
+ REE
Sbjct: 81 MSREE 85
>At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 358
Score = 65.7 bits (153), Expect = 3e-11
Identities = 28/66 (42%), Positives = 45/66 (68%)
Frame = +1
Query: 1 SSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPK 180
+ K+++ Q+G I DVVVM D +T+R +GFGFI+Y VD+ H+++G++VE K
Sbjct: 47 AEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVK 106
Query: 181 RAVPRE 198
AVP++
Sbjct: 107 LAVPKD 112
Score = 58.8 bits (136), Expect = 3e-09
Identities = 27/82 (32%), Positives = 47/82 (57%)
Frame = +3
Query: 234 KVVCSWTKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQ 413
K+ + E + ++YF+ FG I V V+ D T + RGFGF+ +D + VD+V +
Sbjct: 34 KIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQK 93
Query: 414 QNHQIKDQHLDVKKAISKTDMS 479
H++ + ++VK A+ K DM+
Sbjct: 94 TFHELNGKMVEVKLAVPK-DMA 114
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 65.7 bits (153), Expect = 3e-11
Identities = 28/66 (42%), Positives = 45/66 (68%)
Frame = +1
Query: 1 SSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPK 180
+ K+++ Q+G I DVVVM D +T+R +GFGFI+Y VD+ H+++G++VE K
Sbjct: 120 AEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVK 179
Query: 181 RAVPRE 198
AVP++
Sbjct: 180 LAVPKD 185
Score = 62.9 bits (146), Expect = 2e-10
Identities = 25/65 (38%), Positives = 47/65 (72%)
Frame = +1
Query: 7 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 186
L++++ +GE+++ V+MKD T R++GFGF+ ++ ++ + + H IDG+IVE K+A
Sbjct: 22 LRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLLK-HIIDGKIVEAKKA 80
Query: 187 VPREE 201
VPR++
Sbjct: 81 VPRDD 85
Score = 58.8 bits (136), Expect = 3e-09
Identities = 27/71 (38%), Positives = 45/71 (63%)
Frame = +3
Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQH 440
+ E+ LR+YF +FG ++ ++ D+ TG+ RGFGFV F D + +RV L + H I +
Sbjct: 16 ETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLLK-HIIDGKI 74
Query: 441 LDVKKAISKTD 473
++ KKA+ + D
Sbjct: 75 VEAKKAVPRDD 85
Score = 58.8 bits (136), Expect = 3e-09
Identities = 27/82 (32%), Positives = 47/82 (57%)
Frame = +3
Query: 234 KVVCSWTKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQ 413
K+ + E + ++YF+ FG I V V+ D T + RGFGF+ +D + VD+V +
Sbjct: 107 KIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQK 166
Query: 414 QNHQIKDQHLDVKKAISKTDMS 479
H++ + ++VK A+ K DM+
Sbjct: 167 TFHELNGKMVEVKLAVPK-DMA 187
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 65.7 bits (153), Expect = 3e-11
Identities = 28/66 (42%), Positives = 45/66 (68%)
Frame = +1
Query: 1 SSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPK 180
+ K+++ Q+G I DVVVM D +T+R +GFGFI+Y VD+ H+++G++VE K
Sbjct: 120 AEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVK 179
Query: 181 RAVPRE 198
AVP++
Sbjct: 180 LAVPKD 185
Score = 62.9 bits (146), Expect = 2e-10
Identities = 25/65 (38%), Positives = 47/65 (72%)
Frame = +1
Query: 7 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 186
L++++ +GE+++ V+MKD T R++GFGF+ ++ ++ + + H IDG+IVE K+A
Sbjct: 22 LRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLLK-HIIDGKIVEAKKA 80
Query: 187 VPREE 201
VPR++
Sbjct: 81 VPRDD 85
Score = 58.8 bits (136), Expect = 3e-09
Identities = 27/71 (38%), Positives = 45/71 (63%)
Frame = +3
Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQH 440
+ E+ LR+YF +FG ++ ++ D+ TG+ RGFGFV F D + +RV L + H I +
Sbjct: 16 ETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLLK-HIIDGKI 74
Query: 441 LDVKKAISKTD 473
++ KKA+ + D
Sbjct: 75 VEAKKAVPRDD 85
Score = 58.8 bits (136), Expect = 3e-09
Identities = 27/82 (32%), Positives = 47/82 (57%)
Frame = +3
Query: 234 KVVCSWTKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQ 413
K+ + E + ++YF+ FG I V V+ D T + RGFGF+ +D + VD+V +
Sbjct: 107 KIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQK 166
Query: 414 QNHQIKDQHLDVKKAISKTDMS 479
H++ + ++VK A+ K DM+
Sbjct: 167 TFHELNGKMVEVKLAVPK-DMA 187
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 64.5 bits (150), Expect = 7e-11
Identities = 31/81 (38%), Positives = 51/81 (62%)
Frame = +1
Query: 7 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 186
LK++ ++G++ D +VMKD T RS+GFG++T++ A A H + RI+E K A
Sbjct: 19 LKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNALKGE-HFLGNRILEVKVA 77
Query: 187 VPREEIKRPEASATVKKLFVA 249
P+EE+++P T ++FVA
Sbjct: 78 TPKEEMRQPAKKVT--RIFVA 96
Score = 53.2 bits (122), Expect = 2e-07
Identities = 25/71 (35%), Positives = 41/71 (57%)
Frame = +1
Query: 1 SSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPK 180
S + +E++GEI D+ + KD +K+ +G GFIT+S A V++ + H + G V
Sbjct: 105 SDFRSHFERYGEITDLYMPKDYNSKQHRGIGFITFSSADSVEDLMED-THDLGGTTVAVD 163
Query: 181 RAVPREEIKRP 213
RA P+E+ P
Sbjct: 164 RATPKEDDHPP 174
Score = 52.4 bits (120), Expect = 3e-07
Identities = 27/81 (33%), Positives = 46/81 (56%)
Frame = +3
Query: 234 KVVCSWTKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQ 413
K+V DI+ + L++Y S FG++ V+ D+ TG+ RGFG+V F + + L+
Sbjct: 4 KLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDA-KNALK 62
Query: 414 QNHQIKDQHLDVKKAISKTDM 476
H + ++ L+VK A K +M
Sbjct: 63 GEHFLGNRILEVKVATPKEEM 83
Score = 49.2 bits (112), Expect = 3e-06
Identities = 25/74 (33%), Positives = 42/74 (56%)
Frame = +1
Query: 7 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 186
L++++ ++G I D + KDPK +GFGF+T+++ + D R H+I G+ V A
Sbjct: 256 LRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTFAENGVADRVA-RRSHEICGQEVAIDSA 314
Query: 187 VPREEIKRPEASAT 228
P +E P A A+
Sbjct: 315 TPLDE-AGPSAGAS 327
Score = 48.8 bits (111), Expect = 4e-06
Identities = 25/75 (33%), Positives = 39/75 (52%)
Frame = +3
Query: 234 KVVCSWTKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQ 413
K+ Q+ +DLR+YF FG+I + D + RGFGFV F + DRV +
Sbjct: 241 KIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTFAENGVADRVA-R 299
Query: 414 QNHQIKDQHLDVKKA 458
++H+I Q + + A
Sbjct: 300 RSHEICGQEVAIDSA 314
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 63.7 bits (148), Expect = 1e-10
Identities = 37/83 (44%), Positives = 53/83 (63%), Gaps = 1/83 (1%)
Frame = +1
Query: 7 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGRIVEPKR 183
LK F ++GEI D V+MKD KT + +GFGF+TY+ + +VD+ Q+N H I G+ VE KR
Sbjct: 59 LKHF-GKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVIQDN--HIIIGKQVEIKR 115
Query: 184 AVPREEIKRPEASATVKKLFVAG 252
+PR + + KK+FV G
Sbjct: 116 TIPRGSMSSNDFK--TKKIFVGG 136
Score = 58.4 bits (135), Expect = 4e-09
Identities = 34/80 (42%), Positives = 48/80 (60%), Gaps = 2/80 (2%)
Frame = +1
Query: 10 KEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDE--AQNNRPHKIDGRIVEPKR 183
KEF+ Q+GE+ + +M+D T RS+GFGF+TY MVD A+ NR ++ G VE K+
Sbjct: 147 KEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLAKGNR-IELSGTQVEIKK 205
Query: 184 AVPREEIKRPEASATVKKLF 243
A P K+P + T K F
Sbjct: 206 AEP----KKPNSVTTPSKRF 221
Score = 54.8 bits (126), Expect = 5e-08
Identities = 25/82 (30%), Positives = 46/82 (56%)
Frame = +3
Query: 234 KVVCSWTKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQ 413
K+ ++ + ++F +G I ++ D++TG+ RGFGFV + D VD+V +Q
Sbjct: 43 KIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKV-IQ 101
Query: 414 QNHQIKDQHLDVKKAISKTDMS 479
NH I + +++K+ I + MS
Sbjct: 102 DNHIIIGKQVEIKRTIPRGSMS 123
Score = 53.2 bits (122), Expect = 2e-07
Identities = 22/79 (27%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Frame = +3
Query: 234 KVVCSWTKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQ 413
K+ +++++ +E+F FG + ++ D TG+ RGFGFV ++ D VD + +
Sbjct: 131 KIFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLAK 190
Query: 414 QNH-QIKDQHLDVKKAISK 467
N ++ +++KKA K
Sbjct: 191 GNRIELSGTQVEIKKAEPK 209
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 63.3 bits (147), Expect = 2e-10
Identities = 28/72 (38%), Positives = 43/72 (59%)
Frame = +1
Query: 10 KEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAV 189
K ++E++G DVVVM D T R +GFGF+TY V+ + H++ + VE KRA+
Sbjct: 137 KSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEVVMQSNFHELSDKRVEVKRAI 196
Query: 190 PREEIKRPEASA 225
P+E I+ +A
Sbjct: 197 PKEGIQSNNGNA 208
Score = 61.3 bits (142), Expect = 6e-10
Identities = 28/78 (35%), Positives = 42/78 (53%)
Frame = +3
Query: 234 KVVCSWTKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQ 413
K+ + EE+ + YF FG V V+ D T + RGFGFV +D D V+ V
Sbjct: 121 KIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEVVMQS 180
Query: 414 QNHQIKDQHLDVKKAISK 467
H++ D+ ++VK+AI K
Sbjct: 181 NFHELSDKRVEVKRAIPK 198
Score = 58.8 bits (136), Expect = 3e-09
Identities = 33/84 (39%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Frame = +3
Query: 228 R*KVVCSWTKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF-DDYDPVDRV 404
R K+ ++ EE L++YFS +G ++ V +K TGK RGFGFV F +D D V
Sbjct: 5 RYKLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVK-- 62
Query: 405 CLQQNHQIKDQHLDVKKAISKTDM 476
L+ H I + +DV+KAI K ++
Sbjct: 63 ALRDTHFILGKPVDVRKAIRKHEL 86
Score = 42.7 bits (96), Expect = 2e-04
Identities = 19/67 (28%), Positives = 43/67 (64%)
Frame = +1
Query: 4 SLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKR 183
+LK+++ ++G +++ VV K+ T + +GFGF+ ++ V +A + H I G+ V+ ++
Sbjct: 21 ALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKALRD-THFILGKPVDVRK 79
Query: 184 AVPREEI 204
A+ + E+
Sbjct: 80 AIRKHEL 86
>At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing
protein similar to GB:L02953 from [Xenopus laevis]
(Nucleic Acids Res. 21, 999-1006 (1993)); contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 369
Score = 61.3 bits (142), Expect = 6e-10
Identities = 26/69 (37%), Positives = 45/69 (65%), Gaps = 1/69 (1%)
Frame = +3
Query: 264 IEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQ-QNHQIKDQH 440
+EE++L+ YF +G+I+ ++ D TG+ RGFGFV F D VDR+ + H++ D+
Sbjct: 168 LEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFSDGKVHELGDKQ 227
Query: 441 LDVKKAISK 467
+++K+A K
Sbjct: 228 VEIKRAEPK 236
Score = 57.6 bits (133), Expect = 8e-09
Identities = 26/67 (38%), Positives = 41/67 (61%)
Frame = +3
Query: 273 EDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQHLDVK 452
E YF FG +V ++TD+ TG RGFGFV F D ++V L+++H I D+ +D+K
Sbjct: 80 ETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKV-LEEDHVIDDRKVDLK 138
Query: 453 KAISKTD 473
+ + + D
Sbjct: 139 RTLPRGD 145
Score = 53.6 bits (123), Expect = 1e-07
Identities = 29/80 (36%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Frame = +1
Query: 16 FYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAVPR 195
++ ++GE+VD V+M D T +GFGF+T++ + V E H ID R V+ KR +PR
Sbjct: 85 YFGKFGEVVDSVIMTDRITGNPRGFGFVTFADS-AVAEKVLEEDHVIDDRKVDLKRTLPR 143
Query: 196 -EEIKRPEASATVKKLFVAG 252
++ +A + +K+FV G
Sbjct: 144 GDKDTDIKAVSKTRKIFVGG 163
Score = 48.8 bits (111), Expect = 4e-06
Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Frame = +1
Query: 7 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGRIVEPKR 183
LK ++ +G+I++ +M D T RS+GFGF+T+ VD + + H++ + VE KR
Sbjct: 173 LKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFSDGKVHELGDKQVEIKR 232
Query: 184 AVPR 195
A P+
Sbjct: 233 AEPK 236
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 60.5 bits (140), Expect = 1e-09
Identities = 31/101 (30%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Frame = +3
Query: 180 ASSSKGRD*KTRS*CHR*KVVCSWTKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRG 359
A ++ +D KT+ K+ + E++L+++F+ +GN+V V+ D ET + RG
Sbjct: 98 AGGNQSKDIKTK------KIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRG 151
Query: 360 FGFVEFDDYDPVDRVCLQQNH-QIKDQHLDVKKAISKTDMS 479
FGFV FD + VD + + N + D +++KKA K ++
Sbjct: 152 FGFVIFDSEEVVDELLSKGNMIDMADTQVEIKKAEPKKSLN 192
Score = 59.3 bits (137), Expect = 3e-09
Identities = 29/78 (37%), Positives = 46/78 (58%)
Frame = +1
Query: 19 YEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAVPRE 198
+ ++GEI D V+M+D T + +GFGFIT++ +VD+ + H I+G+ VE KR +P+
Sbjct: 39 FGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIED-THVINGKQVEIKRTIPKG 97
Query: 199 EIKRPEASATVKKLFVAG 252
KK+FV G
Sbjct: 98 AGGNQSKDIKTKKIFVGG 115
Score = 52.0 bits (119), Expect = 4e-07
Identities = 26/74 (35%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
Frame = +1
Query: 7 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDE--AQNNRPHKIDGRIVEPK 180
LK+F+ ++G +V+ V++D +T RS+GFGF+ + +VDE ++ N D + VE K
Sbjct: 125 LKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGNMIDMADTQ-VEIK 183
Query: 181 RAVPREEIKRPEAS 222
+A P++ + R S
Sbjct: 184 KAEPKKSLNRSPPS 197
Score = 51.6 bits (118), Expect = 5e-07
Identities = 23/78 (29%), Positives = 41/78 (52%)
Frame = +3
Query: 234 KVVCSWTKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQ 413
K+ +D ++F +G I ++ D+ TG+ RGFGF+ F D VD+V ++
Sbjct: 20 KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKV-IE 78
Query: 414 QNHQIKDQHLDVKKAISK 467
H I + +++K+ I K
Sbjct: 79 DTHVINGKQVEIKRTIPK 96
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 59.3 bits (137), Expect = 3e-09
Identities = 29/78 (37%), Positives = 46/78 (58%)
Frame = +1
Query: 19 YEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAVPRE 198
+ ++GEI D V+M+D T + +GFGFIT++ +VD+ + H I+G+ VE KR +P+
Sbjct: 39 FGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIED-THVINGKQVEIKRTIPKG 97
Query: 199 EIKRPEASATVKKLFVAG 252
KK+FV G
Sbjct: 98 AGGNQSKDIKTKKIFVGG 115
Score = 54.4 bits (125), Expect = 7e-08
Identities = 26/80 (32%), Positives = 45/80 (56%)
Frame = +3
Query: 180 ASSSKGRD*KTRS*CHR*KVVCSWTKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRG 359
A ++ +D KT+ K+ + E++L+++F+ +GN+V V+ D ET + RG
Sbjct: 98 AGGNQSKDIKTK------KIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRG 151
Query: 360 FGFVEFDDYDPVDRVCLQQN 419
FGFV FD + VD + + N
Sbjct: 152 FGFVIFDSEEVVDELLSKGN 171
Score = 51.6 bits (118), Expect = 5e-07
Identities = 23/78 (29%), Positives = 41/78 (52%)
Frame = +3
Query: 234 KVVCSWTKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQ 413
K+ +D ++F +G I ++ D+ TG+ RGFGF+ F D VD+V ++
Sbjct: 20 KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKV-IE 78
Query: 414 QNHQIKDQHLDVKKAISK 467
H I + +++K+ I K
Sbjct: 79 DTHVINGKQVEIKRTIPK 96
Score = 46.0 bits (104), Expect = 3e-05
Identities = 17/41 (41%), Positives = 30/41 (73%)
Frame = +1
Query: 7 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDE 129
LK+F+ ++G +V+ V++D +T RS+GFGF+ + +VDE
Sbjct: 125 LKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDE 165
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 56.4 bits (130), Expect = 2e-08
Identities = 28/73 (38%), Positives = 41/73 (56%)
Frame = +1
Query: 4 SLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKR 183
+++ ++EQ+GEIV+ VV+ D T RSKG+GF+T+ +A A N IDGR
Sbjct: 37 TMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRACQNMNPVIDGRRANCNL 96
Query: 184 AVPREEIKRPEAS 222
A + RP S
Sbjct: 97 ACLGAQKPRPPTS 109
Score = 54.0 bits (124), Expect = 9e-08
Identities = 21/53 (39%), Positives = 31/53 (58%)
Frame = +3
Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 419
+ + + +R YF FG IV V+TDK TG+ +G+GFV F + + R C N
Sbjct: 32 ETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRACQNMN 84
>At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 100
Score = 54.4 bits (125), Expect = 7e-08
Identities = 27/60 (45%), Positives = 36/60 (60%)
Frame = +1
Query: 7 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 186
L ++E++GEIV V+ D T+RSKGFGF+T+ + A N H IDGR V K A
Sbjct: 25 LISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRACENPNHTIDGRTVNCKLA 84
Score = 50.8 bits (116), Expect = 9e-07
Identities = 25/62 (40%), Positives = 32/62 (51%)
Frame = +3
Query: 273 EDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQHLDVK 452
E L YF FG IV VV D T + +GFGFV F + + R C NH I + ++ K
Sbjct: 23 EGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRACENPNHTIDGRTVNCK 82
Query: 453 KA 458
A
Sbjct: 83 LA 84
>At2g21690.1 68415.m02580 RNA-binding protein, putative similar to
Glycine-rich RNA-binding protein from {Sinapis alba}
SP|P49311, {Brassica napus} SP|Q05966, {Arabidopsis
thaliana} SP|Q03251; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 117
Score = 53.6 bits (123), Expect = 1e-07
Identities = 20/42 (47%), Positives = 31/42 (73%)
Frame = +3
Query: 258 QDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 383
QD +E+DL + FS FGN++ ++ D++TGK R FGFV F++
Sbjct: 16 QDTDEKDLTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTFEE 57
Score = 33.1 bits (72), Expect = 0.19
Identities = 11/42 (26%), Positives = 26/42 (61%)
Frame = +1
Query: 7 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 132
L + + ++G ++D ++ D T +S+ FGF+T+ + + +A
Sbjct: 23 LTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTFEEEKSMTDA 64
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 52.8 bits (121), Expect = 2e-07
Identities = 21/49 (42%), Positives = 29/49 (59%)
Frame = +3
Query: 273 EDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 419
+++R YF FG I+ ++TDK TGK +G+GFV F D D R N
Sbjct: 31 DEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAVADPN 79
Score = 46.0 bits (104), Expect = 3e-05
Identities = 18/53 (33%), Positives = 34/53 (64%)
Frame = +1
Query: 7 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGR 165
++ +++Q+GEI++ V++ D T +SKG+GF+T+ + A + IDGR
Sbjct: 33 MRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAVADPNPVIDGR 85
>At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 169
Score = 52.4 bits (120), Expect = 3e-07
Identities = 26/70 (37%), Positives = 39/70 (55%)
Frame = +3
Query: 249 WTKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQI 428
WT + +E L +F FG I+ V+VV D+ET + +G+GFV F D + R C N I
Sbjct: 22 WTTR---KEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRACKDPNPTI 78
Query: 429 KDQHLDVKKA 458
+ + + K A
Sbjct: 79 EGRITNCKLA 88
Score = 48.0 bits (109), Expect = 6e-06
Identities = 24/67 (35%), Positives = 39/67 (58%)
Frame = +1
Query: 7 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 186
L F++++GEI+ V V+ D +T RS+G+GF+T+ A A + I+GRI K A
Sbjct: 29 LINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRACKDPNPTIEGRITNCKLA 88
Query: 187 VPREEIK 207
++K
Sbjct: 89 FVGAKVK 95
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 52.4 bits (120), Expect = 3e-07
Identities = 22/59 (37%), Positives = 34/59 (57%)
Frame = +3
Query: 234 KVVCSWTKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCL 410
KV + + E LR +F +G+I+ V+TDK TG+ +G+GFV F D + R C+
Sbjct: 25 KVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACV 83
Score = 45.2 bits (102), Expect = 4e-05
Identities = 20/54 (37%), Positives = 33/54 (61%)
Frame = +1
Query: 4 SLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGR 165
+L+ ++Q+G+I++ VV+ D T RSKG+GF+T+ A + IDGR
Sbjct: 39 TLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACVDPTPIIDGR 92
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 51.6 bits (118), Expect = 5e-07
Identities = 20/49 (40%), Positives = 29/49 (59%)
Frame = +3
Query: 273 EDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 419
+++R YF FG I+ ++TDK TGK +G+GFV F + D R N
Sbjct: 31 DEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVADPN 79
Score = 48.4 bits (110), Expect = 5e-06
Identities = 19/53 (35%), Positives = 35/53 (66%)
Frame = +1
Query: 7 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGR 165
++ ++EQ+GEI++ V++ D T +SKG+GF+T+ ++ A + IDGR
Sbjct: 33 MRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVADPNPVIDGR 85
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 51.6 bits (118), Expect = 5e-07
Identities = 20/49 (40%), Positives = 29/49 (59%)
Frame = +3
Query: 273 EDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 419
+++R YF FG I+ ++TDK TGK +G+GFV F + D R N
Sbjct: 31 DEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVADPN 79
Score = 48.4 bits (110), Expect = 5e-06
Identities = 19/53 (35%), Positives = 35/53 (66%)
Frame = +1
Query: 7 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGR 165
++ ++EQ+GEI++ V++ D T +SKG+GF+T+ ++ A + IDGR
Sbjct: 33 MRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVADPNPVIDGR 85
>At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 244
Score = 51.6 bits (118), Expect = 5e-07
Identities = 22/59 (37%), Positives = 33/59 (55%)
Frame = +3
Query: 234 KVVCSWTKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCL 410
KV + + LR YF FG+IV V+TDK +G+ +G+GFV F D + + C+
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACV 66
Score = 50.0 bits (114), Expect = 2e-06
Identities = 22/54 (40%), Positives = 35/54 (64%)
Frame = +1
Query: 4 SLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGR 165
SL+ ++EQ+G+IV+ VV+ D + RSKG+GF+T+ +A + IDGR
Sbjct: 22 SLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVDPAPVIDGR 75
>At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 245
Score = 51.6 bits (118), Expect = 5e-07
Identities = 22/59 (37%), Positives = 33/59 (55%)
Frame = +3
Query: 234 KVVCSWTKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCL 410
KV + + LR YF FG+IV V+TDK +G+ +G+GFV F D + + C+
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACV 66
Score = 50.0 bits (114), Expect = 2e-06
Identities = 22/54 (40%), Positives = 35/54 (64%)
Frame = +1
Query: 4 SLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGR 165
SL+ ++EQ+G+IV+ VV+ D + RSKG+GF+T+ +A + IDGR
Sbjct: 22 SLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVDPAPVIDGR 75
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 51.2 bits (117), Expect = 7e-07
Identities = 22/65 (33%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Frame = +3
Query: 267 EEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN-HQIKDQHL 443
++ LR+ F+ FG++V V+ D+ETG+ RGFGFV F+D + + ++ +H+
Sbjct: 47 DDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHI 106
Query: 444 DVKKA 458
V A
Sbjct: 107 RVNPA 111
Score = 39.9 bits (89), Expect = 0.002
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Frame = +1
Query: 1 SSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHK-IDGRIVEP 177
+SL++ + +G++VD V+ D +T RS+GFGF+ ++ A + K ++GR +
Sbjct: 49 ASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRV 108
Query: 178 KRAVPREEIKR 210
A R R
Sbjct: 109 NPANDRPSAPR 119
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 51.2 bits (117), Expect = 7e-07
Identities = 22/65 (33%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Frame = +3
Query: 267 EEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN-HQIKDQHL 443
++ LR+ F+ FG++V V+ D+ETG+ RGFGFV F+D + + ++ +H+
Sbjct: 47 DDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHI 106
Query: 444 DVKKA 458
V A
Sbjct: 107 RVNPA 111
Score = 39.9 bits (89), Expect = 0.002
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Frame = +1
Query: 1 SSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHK-IDGRIVEP 177
+SL++ + +G++VD V+ D +T RS+GFGF+ ++ A + K ++GR +
Sbjct: 49 ASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRV 108
Query: 178 KRAVPREEIKR 210
A R R
Sbjct: 109 NPANDRPSAPR 119
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 50.4 bits (115), Expect = 1e-06
Identities = 21/58 (36%), Positives = 32/58 (55%)
Frame = +3
Query: 234 KVVCSWTKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVC 407
KV + + E LR++F +G I+ V+ DK TG+ +G+GFV F D + R C
Sbjct: 25 KVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRAC 82
Score = 48.8 bits (111), Expect = 4e-06
Identities = 22/54 (40%), Positives = 34/54 (62%)
Frame = +1
Query: 4 SLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGR 165
+L++ +EQ+GEI++ VV+ D T RSKG+GF+T+ A + IDGR
Sbjct: 39 TLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRACADPTPIIDGR 92
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 49.6 bits (113), Expect = 2e-06
Identities = 19/38 (50%), Positives = 28/38 (73%)
Frame = +3
Query: 264 IEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 377
++E+ LRE F+ +G +V V+ D+ETG+ RGFGFV F
Sbjct: 51 MDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTF 88
Score = 46.8 bits (106), Expect = 1e-05
Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Frame = +1
Query: 4 SLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGRIVEPK 180
SL+E + ++GE+VD V+ D +T RS+GFGF+T++ + A Q + GR+V+
Sbjct: 55 SLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQALDGRDLHGRVVKVN 114
Query: 181 RAVPR 195
A R
Sbjct: 115 YANDR 119
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 49.6 bits (113), Expect = 2e-06
Identities = 18/38 (47%), Positives = 28/38 (73%)
Frame = +3
Query: 270 EEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 383
+EDL+ FS FG+++ ++ D+E+G+ RGFGFV F D
Sbjct: 19 DEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKD 56
Score = 37.9 bits (84), Expect = 0.007
Identities = 13/42 (30%), Positives = 28/42 (66%)
Frame = +1
Query: 7 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 132
L+ + Q+G+++D ++ D ++ RS+GFGF+T+ + +A
Sbjct: 22 LQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDA 63
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 49.6 bits (113), Expect = 2e-06
Identities = 18/38 (47%), Positives = 28/38 (73%)
Frame = +3
Query: 270 EEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 383
+EDL+ FS FG+++ ++ D+E+G+ RGFGFV F D
Sbjct: 19 DEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKD 56
Score = 45.2 bits (102), Expect = 4e-05
Identities = 19/64 (29%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Frame = +1
Query: 7 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY-SQAHMVDEAQNNRPHKIDGRIVEPKR 183
L+ + Q+G+++D ++ D ++ RS+GFGF+T+ + M D + ++DGR++
Sbjct: 22 LQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNE 81
Query: 184 AVPR 195
A R
Sbjct: 82 AQSR 85
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 49.6 bits (113), Expect = 2e-06
Identities = 18/38 (47%), Positives = 28/38 (73%)
Frame = +3
Query: 270 EEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 383
+EDL+ FS FG+++ ++ D+E+G+ RGFGFV F D
Sbjct: 19 DEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKD 56
Score = 45.2 bits (102), Expect = 4e-05
Identities = 19/64 (29%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Frame = +1
Query: 7 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY-SQAHMVDEAQNNRPHKIDGRIVEPKR 183
L+ + Q+G+++D ++ D ++ RS+GFGF+T+ + M D + ++DGR++
Sbjct: 22 LQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNE 81
Query: 184 AVPR 195
A R
Sbjct: 82 AQSR 85
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 49.6 bits (113), Expect = 2e-06
Identities = 18/38 (47%), Positives = 28/38 (73%)
Frame = +3
Query: 270 EEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 383
+EDL+ FS FG+++ ++ D+E+G+ RGFGFV F D
Sbjct: 19 DEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKD 56
Score = 45.2 bits (102), Expect = 4e-05
Identities = 19/64 (29%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Frame = +1
Query: 7 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY-SQAHMVDEAQNNRPHKIDGRIVEPKR 183
L+ + Q+G+++D ++ D ++ RS+GFGF+T+ + M D + ++DGR++
Sbjct: 22 LQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNE 81
Query: 184 AVPR 195
A R
Sbjct: 82 AQSR 85
>At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 347
Score = 49.6 bits (113), Expect = 2e-06
Identities = 22/54 (40%), Positives = 36/54 (66%)
Frame = +1
Query: 4 SLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGR 165
++K+ +EQ+GEI++ VV+ D + RSKG+GF+T+ +A A + IDGR
Sbjct: 28 TMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDATPVIDGR 81
Score = 45.6 bits (103), Expect = 3e-05
Identities = 18/59 (30%), Positives = 33/59 (55%)
Frame = +3
Query: 234 KVVCSWTKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCL 410
KV + +E ++++F FG I+ V+TDK +G+ +G+GFV F + + C+
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACV 72
>At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 242
Score = 49.6 bits (113), Expect = 2e-06
Identities = 22/54 (40%), Positives = 36/54 (66%)
Frame = +1
Query: 4 SLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGR 165
++K+ +EQ+GEI++ VV+ D + RSKG+GF+T+ +A A + IDGR
Sbjct: 28 TMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDATPVIDGR 81
Score = 45.6 bits (103), Expect = 3e-05
Identities = 18/59 (30%), Positives = 33/59 (55%)
Frame = +3
Query: 234 KVVCSWTKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCL 410
KV + +E ++++F FG I+ V+TDK +G+ +G+GFV F + + C+
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACV 72
>At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 249
Score = 49.6 bits (113), Expect = 2e-06
Identities = 22/54 (40%), Positives = 36/54 (66%)
Frame = +1
Query: 4 SLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGR 165
++K+ +EQ+GEI++ VV+ D + RSKG+GF+T+ +A A + IDGR
Sbjct: 28 TMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDATPVIDGR 81
Score = 45.6 bits (103), Expect = 3e-05
Identities = 18/59 (30%), Positives = 33/59 (55%)
Frame = +3
Query: 234 KVVCSWTKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCL 410
KV + +E ++++F FG I+ V+TDK +G+ +G+GFV F + + C+
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACV 72
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 49.2 bits (112), Expect = 3e-06
Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Frame = +1
Query: 7 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHK-IDGRIVEPK 180
L+E + +G +VD +VM+D T RS+GFGF+TYS + A + K ++GR V K
Sbjct: 19 LREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSGMDGKELNGRRVSVK 77
Score = 42.3 bits (95), Expect = 3e-04
Identities = 17/43 (39%), Positives = 27/43 (62%)
Frame = +3
Query: 270 EEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVD 398
++ LRE FS +GN+V V+ D+ T + RGFGFV + + +
Sbjct: 16 DDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAE 58
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 49.2 bits (112), Expect = 3e-06
Identities = 22/70 (31%), Positives = 41/70 (58%), Gaps = 3/70 (4%)
Frame = +3
Query: 267 EEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQ--- 437
E+EDL FS FG +VS V+ D +TG + F+EF++ + ++ + ++ + D
Sbjct: 255 EDEDLHTIFSRFGTVVSADVIRDFKTGDSLCYAFIEFENKESCEQAYFKMDNALIDDRRI 314
Query: 438 HLDVKKAISK 467
H+D +++SK
Sbjct: 315 HVDFSQSVSK 324
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 48.8 bits (111), Expect = 4e-06
Identities = 22/58 (37%), Positives = 32/58 (55%)
Frame = +3
Query: 246 SWTKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 419
+WT D LR+ F +G++V VV DK +G+ RGFGF+ FD+ +D N
Sbjct: 15 AWTTSD---RGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAAMN 69
Score = 46.0 bits (104), Expect = 3e-05
Identities = 22/65 (33%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Frame = +1
Query: 7 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGRIVEPKR 183
L++ +E++G +V+ V+ D + RS+GFGFIT+ + +DEA +DGR + +
Sbjct: 23 LRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAAMNGMDLDGRTITVDK 82
Query: 184 AVPRE 198
A P +
Sbjct: 83 AQPHQ 87
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 48.8 bits (111), Expect = 4e-06
Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Frame = +1
Query: 7 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHK-IDGRIV 171
LKE + +G+IVD VV+ D ++ S+GFGF+TY + + A +K +DGRI+
Sbjct: 52 LKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQAMQNKELDGRII 107
Score = 47.2 bits (107), Expect = 1e-05
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Frame = +3
Query: 234 KVVCSWTKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVC-L 410
K+ + E L+E F +FG IV VV D+E+G RGFGFV +D + +
Sbjct: 37 KIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQA 96
Query: 411 QQNHQIKDQHLDVKKAIS 464
QN ++ + + V A S
Sbjct: 97 MQNKELDGRIIGVHPADS 114
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 48.4 bits (110), Expect = 5e-06
Identities = 28/66 (42%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Frame = +3
Query: 279 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQI-KDQHLDVKK 455
L++ F FGNIVS V T E GK RG+GFV+F+ D N I D+ + V K
Sbjct: 128 LQDMFKKFGNIVSCKVAT-LEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGK 186
Query: 456 AISKTD 473
+ KTD
Sbjct: 187 FMKKTD 192
Score = 40.7 bits (91), Expect = 0.001
Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Frame = +3
Query: 264 IEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFD-DYDPVDRVCLQQNHQIKDQH 440
+ EE+LR++FS G I S ++ D E GK +GFGFV F + +D V +
Sbjct: 315 VTEEELRKHFSQCGTITSTKLMCD-EKGKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKP 373
Query: 441 LDVKKAISKTD 473
L V A K D
Sbjct: 374 LYVAIAQKKED 384
Score = 39.9 bits (89), Expect = 0.002
Identities = 20/47 (42%), Positives = 29/47 (61%)
Frame = +3
Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDR 401
D+ E+ LRE F+ FG IVS+++ D E RG+ FV FD+ + R
Sbjct: 211 DVSEDLLREKFAEFGKIVSLAIAKD-ENRLCRGYAFVNFDNPEDARR 256
Score = 30.7 bits (66), Expect = 1.0
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = +1
Query: 7 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYS 108
L++ + Q G I +M D K K SKGFGF+ +S
Sbjct: 320 LRKHFSQCGTITSTKLMCDEKGK-SKGFGFVCFS 352
>At1g71800.1 68414.m08298 cleavage stimulation factor, putative
similar to cleavage stimulation factor 64 kilodalton
subunit GB:AAD47839 GI:5713194 from [Drosophila
melanogaster], SP|P33240 Cleavage stimulation factor, 64
kDa subunit {Homo sapiens}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 461
Score = 48.0 bits (109), Expect = 6e-06
Identities = 21/41 (51%), Positives = 27/41 (65%)
Frame = +3
Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 383
D EE LRE G +VS +VTD+ETGK +G+GF E+ D
Sbjct: 19 DATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKD 59
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 47.6 bits (108), Expect = 8e-06
Identities = 20/46 (43%), Positives = 28/46 (60%)
Frame = +3
Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVD 398
D++ L + FS G +V VV D+ETG+ RGFGFV D D ++
Sbjct: 254 DVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELN 299
Score = 39.5 bits (88), Expect = 0.002
Identities = 16/42 (38%), Positives = 29/42 (69%)
Frame = +1
Query: 7 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 132
L++ + + G++V+ V+ D +T RS+GFGF+T S ++EA
Sbjct: 260 LEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEA 301
Score = 39.1 bits (87), Expect = 0.003
Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Frame = +1
Query: 4 SLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGRIVEPK 180
+L +EQ G + V+ + +T +S+GFGF+T S + A + + ++GR++
Sbjct: 165 ALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVN 224
Query: 181 RAVPREEIKRPEASATV 231
+A PR RPE + V
Sbjct: 225 KAAPRG--SRPERAPRV 239
Score = 35.5 bits (78), Expect = 0.035
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +3
Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN-HQIKDQ 437
D+ + L F G + V+ ++ET + RGFGFV D + + N + + +
Sbjct: 160 DVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGR 219
Query: 438 HLDVKKA 458
L V KA
Sbjct: 220 LLTVNKA 226
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 47.6 bits (108), Expect = 8e-06
Identities = 19/44 (43%), Positives = 31/44 (70%)
Frame = +3
Query: 246 SWTKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 377
SW+ ++E+ L++ FS+FG + V + DK +G+ RGFGFV+F
Sbjct: 49 SWS---VDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDF 89
Score = 35.9 bits (79), Expect = 0.027
Identities = 13/36 (36%), Positives = 25/36 (69%)
Frame = +1
Query: 4 SLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQ 111
SLK+ + +GE+ +V + D + RS+GFGF+ +++
Sbjct: 56 SLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAE 91
>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 272
Score = 47.6 bits (108), Expect = 8e-06
Identities = 22/54 (40%), Positives = 32/54 (59%)
Frame = +3
Query: 273 EDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKD 434
+DLR YF FG +V +VV++ G+ +G+GF+ F DY R LQ + I D
Sbjct: 26 DDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITFRDYVSTVR-ALQNSKPIID 78
Score = 45.6 bits (103), Expect = 3e-05
Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Frame = +1
Query: 7 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY-SQAHMVDEAQNNRPHKIDGR 165
L+ ++EQ+G++VD V+ + RSKG+GFIT+ V QN++P IDGR
Sbjct: 28 LRRYFEQFGQVVDANVVSETYPGRSKGYGFITFRDYVSTVRALQNSKP-IIDGR 80
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 47.2 bits (107), Expect = 1e-05
Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Frame = +3
Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN-HQIKDQ 437
++ + DL FS FG+I+ ++ +++TG+ RGFGF+ F D +D + + D+
Sbjct: 17 EVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIREMHGRDFGDR 76
Query: 438 HLDVKKAISK 467
+ V +A K
Sbjct: 77 VISVNRAEPK 86
Score = 44.0 bits (99), Expect = 1e-04
Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Frame = +1
Query: 7 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGRIVEPKR 183
L+ + ++G+I+D +M + T RS+GFGFIT++ +DE+ + R++ R
Sbjct: 23 LERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIREMHGRDFGDRVISVNR 82
Query: 184 AVPR 195
A P+
Sbjct: 83 AEPK 86
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 47.2 bits (107), Expect = 1e-05
Identities = 17/41 (41%), Positives = 28/41 (68%)
Frame = +3
Query: 267 EEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYD 389
++ L++ F++FG + +V+ D+ETG+ RGFGFV F D
Sbjct: 47 DDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCED 87
Score = 45.6 bits (103), Expect = 3e-05
Identities = 20/55 (36%), Positives = 37/55 (67%)
Frame = +1
Query: 1 SSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGR 165
SSLK+ + +GE+ + V+ D +T RS+GFGF+++S +++ NN ++DG+
Sbjct: 49 SSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFS----CEDSANNAIKEMDGK 99
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 47.2 bits (107), Expect = 1e-05
Identities = 17/41 (41%), Positives = 28/41 (68%)
Frame = +3
Query: 267 EEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYD 389
++ L++ F++FG + +V+ D+ETG+ RGFGFV F D
Sbjct: 47 DDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCED 87
Score = 45.6 bits (103), Expect = 3e-05
Identities = 20/55 (36%), Positives = 37/55 (67%)
Frame = +1
Query: 1 SSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGR 165
SSLK+ + +GE+ + V+ D +T RS+GFGF+++S +++ NN ++DG+
Sbjct: 49 SSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFS----CEDSANNAIKEMDGK 99
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 46.8 bits (106), Expect = 1e-05
Identities = 19/41 (46%), Positives = 28/41 (68%)
Frame = +3
Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 383
D+ E DL FS +G IV V+++ DK TGK +GF F+ ++D
Sbjct: 46 DLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYED 86
Score = 38.3 bits (85), Expect = 0.005
Identities = 17/41 (41%), Positives = 25/41 (60%)
Frame = +1
Query: 19 YEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 141
+ Q+GEIVDV +++D T +SKGF F+ Y A +N
Sbjct: 56 FSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDN 96
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 46.8 bits (106), Expect = 1e-05
Identities = 21/78 (26%), Positives = 34/78 (43%)
Frame = +3
Query: 234 KVVCSWTKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQ 413
K+ +E LRE FS +G +V ++ D+ETG+ RGF FV F +
Sbjct: 35 KIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQL 94
Query: 414 QNHQIKDQHLDVKKAISK 467
+ + + V A +
Sbjct: 95 DGQDLHGRRIRVNYATER 112
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/63 (30%), Positives = 33/63 (52%)
Frame = +1
Query: 7 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 186
L+E + ++GE+VD ++ D +T RS+GF F+T++ A + GR + A
Sbjct: 50 LREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQLDGQDLHGRRIRVNYA 109
Query: 187 VPR 195
R
Sbjct: 110 TER 112
>At2g37510.1 68415.m04600 RNA-binding protein, putative similar to
SP|P10979 Glycine-rich RNA-binding, abscisic
acid-inducible protein {Zea mays}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 142
Score = 46.4 bits (105), Expect = 2e-05
Identities = 17/54 (31%), Positives = 34/54 (62%)
Frame = +3
Query: 273 EDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKD 434
E L++ F++FG +V V+TD+++G+ +GFGFV + + ++ + N + D
Sbjct: 48 EKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAEMNAKFLD 101
Score = 46.0 bits (104), Expect = 3e-05
Identities = 25/70 (35%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Frame = +1
Query: 7 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHK-IDGRIVEPKR 183
L++ + +G++VD V+ D + RSKGFGF+TY+ ++A+ K +DG ++
Sbjct: 50 LQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAEMNAKFLDGWVIFVDP 109
Query: 184 AVPREEIKRP 213
A PRE +RP
Sbjct: 110 ARPREP-RRP 118
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 46.4 bits (105), Expect = 2e-05
Identities = 22/69 (31%), Positives = 38/69 (55%)
Frame = +3
Query: 267 EEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQHLD 446
+ + LR +FS FG IVS V+ D++TG+ R F F+ F + D Q + + +
Sbjct: 224 QPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAALSFNGTQYEGRRII 283
Query: 447 VKKAISKTD 473
V++ I K++
Sbjct: 284 VREGIEKSE 292
Score = 35.1 bits (77), Expect = 0.047
Identities = 20/71 (28%), Positives = 38/71 (53%)
Frame = +1
Query: 7 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 186
L+ + ++G IV V+ D KT R++ F F++++ D A + +G E +R
Sbjct: 228 LRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAALS-----FNGTQYEGRRI 282
Query: 187 VPREEIKRPEA 219
+ RE I++ E+
Sbjct: 283 IVREGIEKSES 293
Score = 32.7 bits (71), Expect = 0.25
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +3
Query: 279 LREYFSTFGNIVSVSVVTDKETGKKRGFGFV 371
L + F FG ++SV V + +TG+ RG G+V
Sbjct: 124 LLDMFQPFGTVISVEVSRNPQTGESRGSGYV 154
Score = 31.1 bits (67), Expect = 0.76
Identities = 10/34 (29%), Positives = 23/34 (67%)
Frame = +1
Query: 1 SSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFIT 102
+ L + ++ +G ++ V V ++P+T S+G G++T
Sbjct: 122 AQLLDMFQPFGTVISVEVSRNPQTGESRGSGYVT 155
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 46.0 bits (104), Expect = 3e-05
Identities = 19/46 (41%), Positives = 29/46 (63%)
Frame = +3
Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVD 398
D++ L FS G +V VV+D+ETG+ RGFGFV+ + + V+
Sbjct: 217 DVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVN 262
Score = 37.9 bits (84), Expect = 0.007
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Frame = +1
Query: 4 SLKEFYEQWG--EIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGRIVE 174
+L +EQ G EI +V+ +D T +S+GFGF+T S ++A + +++GR +
Sbjct: 128 ALAMLFEQAGTVEISEVIYNRD--TDQSRGFGFVTMSTVEEAEKAVEKFNSFEVNGRRLT 185
Query: 175 PKRAVPREEIKRPEASATV 231
RA PR RPE V
Sbjct: 186 VNRAAPRG--SRPERQPRV 202
Score = 37.5 bits (83), Expect = 0.009
Identities = 16/42 (38%), Positives = 27/42 (64%)
Frame = +1
Query: 7 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 132
L+ + + G++VD V+ D +T RS+GFGF+ S + V+ A
Sbjct: 223 LERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVA 264
Score = 33.5 bits (73), Expect = 0.14
Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = +3
Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN-HQIKDQ 437
D++ + L F G + V+ +++T + RGFGFV + ++ + N ++ +
Sbjct: 123 DVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKFNSFEVNGR 182
Query: 438 HLDVKKA 458
L V +A
Sbjct: 183 RLTVNRA 189
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 46.0 bits (104), Expect = 3e-05
Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Frame = +3
Query: 270 EEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN-HQIKDQHLD 446
++DL+ F +G I S V+ D E GK +GFGFV F++ D R N H+ D+
Sbjct: 42 DDDLKNAFGEYGKITSAVVMKDGE-GKSKGFGFVNFENADDAARAVESLNGHKFDDKEWY 100
Query: 447 VKKAISKTD 473
V +A K++
Sbjct: 101 VGRAQKKSE 109
Score = 39.1 bits (87), Expect = 0.003
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Frame = +1
Query: 7 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGRIVEPKR 183
LK + ++G+I VVMKD + K SKGFGF+ + A A ++ HK D + R
Sbjct: 45 LKNAFGEYGKITSAVVMKDGEGK-SKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGR 103
Query: 184 AVPREE 201
A + E
Sbjct: 104 AQKKSE 109
Score = 34.3 bits (75), Expect = 0.082
Identities = 18/58 (31%), Positives = 31/58 (53%)
Frame = +1
Query: 7 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPK 180
LKE + +G + VM+DP SKG GF+ ++ EA + ++ G+++E K
Sbjct: 148 LKEIFSPFGTVTSSKVMRDP-NGTSKGSGFVAFATPEEATEAMS----QLSGKMIESK 200
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 46.0 bits (104), Expect = 3e-05
Identities = 23/69 (33%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Frame = +1
Query: 4 SLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKI-DGRIVEPK 180
SL++ + +G+I + +++D +T+R KGFGFIT+ +A + KI DGR++ +
Sbjct: 22 SLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKSLDGKIVDGRLIFVE 81
Query: 181 RAVPREEIK 207
A EE++
Sbjct: 82 VAKNAEEVR 90
Score = 45.2 bits (102), Expect = 4e-05
Identities = 20/58 (34%), Positives = 31/58 (53%)
Frame = +3
Query: 270 EEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQHL 443
++ LR+ FS FG I ++ D ET + +GFGF+ FD D + + +I D L
Sbjct: 20 DQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKSLDGKIVDGRL 77
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 45.6 bits (103), Expect = 3e-05
Identities = 22/54 (40%), Positives = 28/54 (51%)
Frame = +3
Query: 258 QDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 419
+D E DL E F FG + V V D++TG RGFGFV F + R + N
Sbjct: 222 EDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINKLN 275
Score = 33.9 bits (74), Expect = 0.11
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Frame = +1
Query: 7 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN-RPHKIDGRIVEPKR 183
L E + +G + V V D KT S+GFGF+ + A N + D I+ +
Sbjct: 229 LMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINKLNGYGYDNLILRVEW 288
Query: 184 AVPR 195
A PR
Sbjct: 289 ATPR 292
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 45.2 bits (102), Expect = 4e-05
Identities = 19/53 (35%), Positives = 33/53 (62%)
Frame = +3
Query: 270 EEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQI 428
EE++R YF GN++ V+++ DK TG+++G FV++ DR ++QI
Sbjct: 133 EEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRALHNQI 185
Score = 34.3 bits (75), Expect = 0.082
Identities = 12/42 (28%), Positives = 27/42 (64%)
Frame = +1
Query: 7 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 132
++ ++EQ G +++V ++KD +T + +G F+ Y+ + D A
Sbjct: 136 IRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRA 177
Score = 33.1 bits (72), Expect = 0.19
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 9/73 (12%)
Frame = +1
Query: 7 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN--NRPHKIDG------ 162
++E + Q+G + DV +M+D + ++S+G GF+ YS A + N + + G
Sbjct: 227 VEEIFLQFGHVEDVYLMRD-EYRQSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLI 285
Query: 163 -RIVEPKRAVPRE 198
R EPKR P E
Sbjct: 286 VRFAEPKRPKPGE 298
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 45.2 bits (102), Expect = 4e-05
Identities = 19/53 (35%), Positives = 33/53 (62%)
Frame = +3
Query: 270 EEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQI 428
EE++R YF GN++ V+++ DK TG+++G FV++ DR ++QI
Sbjct: 133 EEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRALHNQI 185
Score = 34.3 bits (75), Expect = 0.082
Identities = 12/42 (28%), Positives = 27/42 (64%)
Frame = +1
Query: 7 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 132
++ ++EQ G +++V ++KD +T + +G F+ Y+ + D A
Sbjct: 136 IRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRA 177
Score = 33.1 bits (72), Expect = 0.19
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 9/73 (12%)
Frame = +1
Query: 7 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN--NRPHKIDG------ 162
++E + Q+G + DV +M+D + ++S+G GF+ YS A + N + + G
Sbjct: 227 VEEIFLQFGHVEDVYLMRD-EYRQSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLI 285
Query: 163 -RIVEPKRAVPRE 198
R EPKR P E
Sbjct: 286 VRFAEPKRPKPGE 298
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 44.8 bits (101), Expect = 6e-05
Identities = 18/58 (31%), Positives = 33/58 (56%)
Frame = +3
Query: 270 EEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQHL 443
E ++ +FS FG + V V +K+TGK + FGF++F+D + + N + +H+
Sbjct: 73 ETEIEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVAEIAAGAMNDYLLMEHM 130
Score = 35.5 bits (78), Expect = 0.035
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Frame = +1
Query: 1 SSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQ---AHMVDEAQNN---RPHKIDG 162
+ ++ F+ Q+G + V V ++ KT +SK FGFI + A + A N+ H +
Sbjct: 74 TEIEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVAEIAAGAMNDYLLMEHMLKV 133
Query: 163 RIVEPKRAVP 192
++EP+ P
Sbjct: 134 HVIEPENVKP 143
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 44.8 bits (101), Expect = 6e-05
Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Frame = +1
Query: 4 SLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY-SQAHMVDEAQNNRPHKIDGRIVEPK 180
+L+ + Q+G+++D ++ D +T RS+GFGF+T+ + M D + +DGR +
Sbjct: 23 ALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVN 82
Query: 181 RAVPR 195
A R
Sbjct: 83 EAQSR 87
Score = 43.6 bits (98), Expect = 1e-04
Identities = 15/39 (38%), Positives = 26/39 (66%)
Frame = +3
Query: 267 EEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 383
++ L F+ +G+++ ++ D+ETG+ RGFGFV F D
Sbjct: 20 DDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKD 58
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 44.8 bits (101), Expect = 6e-05
Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Frame = +1
Query: 4 SLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY-SQAHMVDEAQNNRPHKIDGRIVEPK 180
+L+ + Q+G+++D ++ D +T RS+GFGF+T+ + M D + +DGR +
Sbjct: 23 ALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVN 82
Query: 181 RAVPR 195
A R
Sbjct: 83 EAQSR 87
Score = 43.6 bits (98), Expect = 1e-04
Identities = 15/39 (38%), Positives = 26/39 (66%)
Frame = +3
Query: 267 EEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 383
++ L F+ +G+++ ++ D+ETG+ RGFGFV F D
Sbjct: 20 DDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKD 58
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 44.8 bits (101), Expect = 6e-05
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Frame = +3
Query: 261 DIEEEDLREYFSTFGNIVS-VSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQ-IKD 434
D++E+ L + FS FG I S ++ D +TG RGFGF+ +D ++ D Q + +
Sbjct: 122 DVDEKLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAAIESMTGQYLSN 181
Query: 435 QHLDVKKAISK 467
+ + V A K
Sbjct: 182 RQITVSYAYKK 192
Score = 32.7 bits (71), Expect = 0.25
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +1
Query: 52 VMKDPKTKRSKGFGFITYSQAHMVDEA 132
+M+DP T S+GFGFI+Y D A
Sbjct: 144 IMRDPDTGNSRGFGFISYDSFEASDAA 170
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 44.4 bits (100), Expect = 8e-05
Identities = 19/53 (35%), Positives = 29/53 (54%)
Frame = +3
Query: 267 EEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQ 425
+E L++ FS+F + V+T+K TG+ RG+GFV F D + N Q
Sbjct: 43 DEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISAMNGQ 95
Score = 29.9 bits (64), Expect = 1.8
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +1
Query: 4 SLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY 105
SLK+ + + + + VM + T RS+G+GF+ +
Sbjct: 46 SLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNF 79
>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 382
Score = 44.4 bits (100), Expect = 8e-05
Identities = 19/39 (48%), Positives = 25/39 (64%)
Frame = +3
Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 377
D E+L+ F +G I SVV DK+TG+ +GFGFV F
Sbjct: 173 DTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLF 211
Score = 38.7 bits (86), Expect = 0.004
Identities = 24/79 (30%), Positives = 36/79 (45%)
Frame = +1
Query: 4 SLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKR 183
+LK +E +GEI + V+ D T R+KGFGF+ + A N ++ R V
Sbjct: 178 NLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKGARAALKNPEKRMYNRTVSCLP 237
Query: 184 AVPREEIKRPEASATVKKL 240
A P K E V+ +
Sbjct: 238 ARPFNSGKPREQQQPVESV 256
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 44.4 bits (100), Expect = 8e-05
Identities = 21/48 (43%), Positives = 28/48 (58%)
Frame = +3
Query: 255 KQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVD 398
+ D +EDLR+ F FG + + + D TG RGFGFV+F DP D
Sbjct: 44 RHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQF--MDPAD 89
Score = 31.5 bits (68), Expect = 0.58
Identities = 15/55 (27%), Positives = 31/55 (56%)
Frame = +1
Query: 7 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIV 171
L++ +EQ+G + D+ + +D T +GFGF+ + +A+ H +DG ++
Sbjct: 52 LRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAK----HHMDGYLL 102
>At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/43 (44%), Positives = 26/43 (60%)
Frame = +3
Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYD 389
D E LR FS++G++ V+ DK TGK +G+GFV F D
Sbjct: 85 DTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVD 127
Score = 43.6 bits (98), Expect = 1e-04
Identities = 22/82 (26%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Frame = +1
Query: 7 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 186
L+ + +G++ + +V+ D T +SKG+GF+T+ A KIDGR+ + A
Sbjct: 91 LRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALKEPSKKIDGRVTVTQLA 150
Query: 187 VPREEIKRPE-ASATVKKLFVA 249
+ + A +++K++VA
Sbjct: 151 ASGNQGTGSQIADISMRKIYVA 172
Score = 32.3 bits (70), Expect = 0.33
Identities = 17/67 (25%), Positives = 29/67 (43%)
Frame = +3
Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQH 440
D+ + L +F +G++ + DK TGK RGF + + I +H
Sbjct: 177 DMPADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALADPVKVIDGKH 236
Query: 441 LDVKKAI 461
L+ K A+
Sbjct: 237 LNCKLAV 243
>At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/43 (44%), Positives = 26/43 (60%)
Frame = +3
Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYD 389
D E LR FS++G++ V+ DK TGK +G+GFV F D
Sbjct: 85 DTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVD 127
Score = 43.6 bits (98), Expect = 1e-04
Identities = 22/82 (26%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Frame = +1
Query: 7 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 186
L+ + +G++ + +V+ D T +SKG+GF+T+ A KIDGR+ + A
Sbjct: 91 LRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALKEPSKKIDGRVTVTQLA 150
Query: 187 VPREEIKRPE-ASATVKKLFVA 249
+ + A +++K++VA
Sbjct: 151 ASGNQGTGSQIADISMRKIYVA 172
Score = 32.3 bits (70), Expect = 0.33
Identities = 17/67 (25%), Positives = 29/67 (43%)
Frame = +3
Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQH 440
D+ + L +F +G++ + DK TGK RGF + + I +H
Sbjct: 177 DMPADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALADPVKVIDGKH 236
Query: 441 LDVKKAI 461
L+ K A+
Sbjct: 237 LNCKLAV 243
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 43.6 bits (98), Expect = 1e-04
Identities = 22/58 (37%), Positives = 31/58 (53%)
Frame = +3
Query: 255 KQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQI 428
+ D +EDLR F FG + + + D TG RGFGF++F DP D + HQ+
Sbjct: 45 RHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQF--MDPAD--AAEAKHQM 98
Score = 32.7 bits (71), Expect = 0.25
Identities = 17/55 (30%), Positives = 31/55 (56%)
Frame = +1
Query: 7 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIV 171
L+ +EQ+G + D+ + +D T +GFGFI + EA+ H++DG ++
Sbjct: 53 LRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAK----HQMDGYLL 103
>At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM); contains Pfam profile PF00096:
Zinc finger, C2H2 type
Length = 613
Score = 43.6 bits (98), Expect = 1e-04
Identities = 18/39 (46%), Positives = 27/39 (69%)
Frame = +3
Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 377
D +E+L+ F ++G I SVV DK+TG+ +G+GFV F
Sbjct: 418 DTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMF 456
Score = 37.9 bits (84), Expect = 0.007
Identities = 19/56 (33%), Positives = 29/56 (51%)
Frame = +1
Query: 4 SLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIV 171
+LK +E +GEI + V+ D T R KG+GF+ + EA ++ RIV
Sbjct: 423 NLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRKGAREALKRPEKRMYNRIV 478
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 43.2 bits (97), Expect = 2e-04
Identities = 19/53 (35%), Positives = 28/53 (52%)
Frame = +3
Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 419
+++ L + F + GN+ V V+ DK TG+ RGFGFV V+ Q N
Sbjct: 101 NVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFN 153
Score = 40.7 bits (91), Expect = 0.001
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Frame = +1
Query: 4 SLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGRIVEPK 180
+L+ + + G++V+ V+ D + RSKGFGF+TY + V A ++ +DGR +
Sbjct: 219 ALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVS 278
Query: 181 RAVPR 195
A R
Sbjct: 279 EAEAR 283
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/50 (38%), Positives = 28/50 (56%)
Frame = +3
Query: 246 SWTKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPV 395
SW D+ E L FS G +V V+ D+++G+ +GFGFV +D V
Sbjct: 212 SWGVDDMALESL---FSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEV 258
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Frame = +1
Query: 1 SSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVD-EAQNNRPHKIDGR 165
+ L + +E G + V V+ D T RS+GFGF+T S V+ AQ +++DGR
Sbjct: 105 AQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGR 160
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 43.2 bits (97), Expect = 2e-04
Identities = 18/56 (32%), Positives = 30/56 (53%)
Frame = +3
Query: 267 EEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKD 434
+E+ + F+ FG + ++ D+ETG+ +GF FV F D D + + N Q D
Sbjct: 56 DEQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDEDSMRTAIDRMNGQELD 111
Score = 36.3 bits (80), Expect = 0.020
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = +1
Query: 4 SLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGR 165
S++ + ++GE+ D ++ D +T RSKGF F+T+ + A ++DGR
Sbjct: 59 SIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDEDSMRTAIDRMNGQELDGR 113
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 42.7 bits (96), Expect = 2e-04
Identities = 17/40 (42%), Positives = 27/40 (67%)
Frame = +3
Query: 264 IEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 383
+E++ L FS+FG IV V+ D+ TG +G+GFV++ D
Sbjct: 491 LEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYAD 530
Score = 38.7 bits (86), Expect = 0.004
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +1
Query: 7 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGR 165
L + +GEIV V+KD T SKG+GF+ Y+ M + A Q ++ +GR
Sbjct: 496 LINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAMNGYRFEGR 549
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 42.7 bits (96), Expect = 2e-04
Identities = 17/40 (42%), Positives = 27/40 (67%)
Frame = +3
Query: 264 IEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 383
+E++ L FS+FG IV V+ D+ TG +G+GFV++ D
Sbjct: 491 LEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYAD 530
Score = 38.7 bits (86), Expect = 0.004
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +1
Query: 7 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGR 165
L + +GEIV V+KD T SKG+GF+ Y+ M + A Q ++ +GR
Sbjct: 496 LINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAMNGYRFEGR 549
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 42.7 bits (96), Expect = 2e-04
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = +3
Query: 270 EEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNH-QIKDQHLD 446
E +RE +FG + +V D+ETG +G+ F + D D C N ++ D+ L
Sbjct: 372 ESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLT 431
Query: 447 VKKA 458
V++A
Sbjct: 432 VRRA 435
Score = 31.1 bits (67), Expect = 0.76
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +1
Query: 1 SSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 132
S ++E E +G + ++KD +T SKG+ F Y + D A
Sbjct: 373 SQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIA 416
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 42.7 bits (96), Expect = 2e-04
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = +3
Query: 270 EEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNH-QIKDQHLD 446
E +RE +FG + +V D+ETG +G+ F + D D C N ++ D+ L
Sbjct: 372 ESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLT 431
Query: 447 VKKA 458
V++A
Sbjct: 432 VRRA 435
Score = 31.1 bits (67), Expect = 0.76
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +1
Query: 1 SSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 132
S ++E E +G + ++KD +T SKG+ F Y + D A
Sbjct: 373 SQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIA 416
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 42.7 bits (96), Expect = 2e-04
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = +3
Query: 270 EEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNH-QIKDQHLD 446
E +RE +FG + +V D+ETG +G+ F + D D C N ++ D+ L
Sbjct: 372 ESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLT 431
Query: 447 VKKA 458
V++A
Sbjct: 432 VRRA 435
Score = 31.1 bits (67), Expect = 0.76
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +1
Query: 1 SSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 132
S ++E E +G + ++KD +T SKG+ F Y + D A
Sbjct: 373 SQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIA 416
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 42.7 bits (96), Expect = 2e-04
Identities = 18/34 (52%), Positives = 24/34 (70%)
Frame = +3
Query: 270 EEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFV 371
EE+L E+FSTFG I V +V DKET + RG ++
Sbjct: 274 EEELMEHFSTFGKISEVHLVLDKETKRSRGIAYI 307
Score = 33.5 bits (73), Expect = 0.14
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Frame = +3
Query: 270 EEDLREYFSTF---GNIVSVSVVTDKETGK--KRGFGFVEFDDYDPVDRVCLQQNHQIKD 434
+E L+++F+ G I+SV+++ K+ K G+GFVEFD + V + D
Sbjct: 582 DEGLKKHFTKLVKQGKILSVTIIKHKKNEKYLSSGYGFVEFDSVETATSVYRDLQGTVLD 641
Query: 435 QH 440
H
Sbjct: 642 GH 643
Score = 31.5 bits (68), Expect = 0.58
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +1
Query: 7 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY 105
L E + +G+I +V ++ D +TKRS+G +I Y
Sbjct: 277 LMEHFSTFGKISEVHLVLDKETKRSRGIAYILY 309
>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 261
Score = 42.7 bits (96), Expect = 2e-04
Identities = 18/58 (31%), Positives = 31/58 (53%)
Frame = +3
Query: 234 KVVCSWTKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVC 407
KV D +E + ++F +G+I+ +++DK T + +G+GFV F D R C
Sbjct: 18 KVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRAC 75
Score = 42.7 bits (96), Expect = 2e-04
Identities = 17/54 (31%), Positives = 34/54 (62%)
Frame = +1
Query: 4 SLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGR 165
++ + + ++G+I++ V++ D T+RSKG+GF+T+ A A + I+GR
Sbjct: 32 AMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRACEDSTPIINGR 85
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 42.3 bits (95), Expect = 3e-04
Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Frame = +1
Query: 4 SLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN-RPHKIDGRIVEPK 180
+L+ + + G++V+ V+ D + RSKGFGF+T S + V +A N+ +DGR +
Sbjct: 264 ALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVS 323
Query: 181 RAVPR 195
A R
Sbjct: 324 EAEAR 328
Score = 41.9 bits (94), Expect = 4e-04
Identities = 19/53 (35%), Positives = 28/53 (52%)
Frame = +3
Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 419
+++ L + F + GN+ V V+ DK TG+ RGFGFV V+ Q N
Sbjct: 109 NVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFN 161
Score = 38.3 bits (85), Expect = 0.005
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Frame = +1
Query: 1 SSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVD-EAQNNRPHKIDGR 165
+ L + +E G + V V+ D T RS+GFGF+T S A V+ AQ ++ +GR
Sbjct: 113 AQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGR 168
Score = 36.3 bits (80), Expect = 0.020
Identities = 17/52 (32%), Positives = 28/52 (53%)
Frame = +3
Query: 246 SWTKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDR 401
SW D+ E+L F+ G +V V+ D+++G+ +GFGFV V +
Sbjct: 257 SWGVDDMALENL---FNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQK 305
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 42.3 bits (95), Expect = 3e-04
Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Frame = +1
Query: 4 SLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN-RPHKIDGRIVEPK 180
+L+ + + G++V+ V+ D + RSKGFGF+T S + V +A N+ +DGR +
Sbjct: 272 ALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVS 331
Query: 181 RAVPR 195
A R
Sbjct: 332 EAEAR 336
Score = 41.9 bits (94), Expect = 4e-04
Identities = 19/53 (35%), Positives = 28/53 (52%)
Frame = +3
Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 419
+++ L + F + GN+ V V+ DK TG+ RGFGFV V+ Q N
Sbjct: 109 NVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFN 161
Score = 38.3 bits (85), Expect = 0.005
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Frame = +1
Query: 1 SSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVD-EAQNNRPHKIDGR 165
+ L + +E G + V V+ D T RS+GFGF+T S A V+ AQ ++ +GR
Sbjct: 113 AQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGR 168
Score = 36.3 bits (80), Expect = 0.020
Identities = 17/52 (32%), Positives = 28/52 (53%)
Frame = +3
Query: 246 SWTKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDR 401
SW D+ E+L F+ G +V V+ D+++G+ +GFGFV V +
Sbjct: 265 SWGVDDMALENL---FNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQK 313
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 42.3 bits (95), Expect = 3e-04
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Frame = +3
Query: 258 QDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQI-KD 434
+ ++ + L E FS G IVS V TD G+ RG+GFV+FD D + N ++ D
Sbjct: 143 KSVDNKTLHEAFSGCGTIVSCKVATD-HMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLND 201
Query: 435 QHLDVKKAISKTD 473
+ + V + K +
Sbjct: 202 KQIFVGPFLRKEE 214
Score = 38.3 bits (85), Expect = 0.005
Identities = 20/52 (38%), Positives = 27/52 (51%)
Frame = +3
Query: 264 IEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 419
+ +E LRE F+ FG I S V+ D +G +G GFV F RV + N
Sbjct: 339 VTDEKLRELFAEFGTITSCKVMRD-PSGTSKGSGFVAFSAASEASRVLNEMN 389
Score = 35.1 bits (77), Expect = 0.047
Identities = 14/54 (25%), Positives = 28/54 (51%)
Frame = +3
Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNH 422
++ + L +YF+ +VSV V D T G+G+V + + D ++ + N+
Sbjct: 56 NVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQKLNY 109
Score = 35.1 bits (77), Expect = 0.047
Identities = 22/78 (28%), Positives = 36/78 (46%)
Frame = +1
Query: 7 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 186
L+E + ++G I VM+DP + SKG GF+ +S A N K+ G
Sbjct: 344 LRELFAEFGTITSCKVMRDP-SGTSKGSGFVAFSAASEASRVLNEMNGKMVGGKPLYVAL 402
Query: 187 VPREEIKRPEASATVKKL 240
R+E +R + A ++
Sbjct: 403 AQRKEERRAKLQAQFSQM 420
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +1
Query: 7 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY 105
LK + Q+G I VVM+D K S+ FGF+ +
Sbjct: 241 LKTTFGQYGSISSAVVMRDGDGK-SRCFGFVNF 272
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 42.3 bits (95), Expect = 3e-04
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Frame = +3
Query: 270 EEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNH-QIKDQHLD 446
E +RE +FG + ++V D+ETG +G+ F + D D C N ++ D+ L
Sbjct: 388 EVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDIACAALNGIKMGDKTLT 447
Query: 447 VKKAI 461
V++AI
Sbjct: 448 VRRAI 452
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +1
Query: 7 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 132
++E E +G + ++KD +T SKG+ F Y + D A
Sbjct: 391 IRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDIA 432
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = +3
Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPV-DRVCLQQNHQIKDQ 437
D+ E L F +G I ++ ++TG+ RGFGF+ F D D + ++ ++
Sbjct: 22 DVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHMHGRELGNK 81
Query: 438 HLDVKKAISK 467
+ V KA K
Sbjct: 82 VISVNKAEPK 91
Score = 38.3 bits (85), Expect = 0.005
Identities = 16/64 (25%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Frame = +1
Query: 7 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGRIVEPKR 183
L+ ++++G+I + +M T R +GFGFIT++ D+A ++ ++ +++ +
Sbjct: 28 LESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHMHGRELGNKVISVNK 87
Query: 184 AVPR 195
A P+
Sbjct: 88 AEPK 91
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = +3
Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPV-DRVCLQQNHQIKDQ 437
D+ E L F +G I ++ ++TG+ RGFGF+ F D D + ++ ++
Sbjct: 22 DVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHMHGRELGNK 81
Query: 438 HLDVKKAISK 467
+ V KA K
Sbjct: 82 VISVNKAEPK 91
Score = 38.3 bits (85), Expect = 0.005
Identities = 16/64 (25%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Frame = +1
Query: 7 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGRIVEPKR 183
L+ ++++G+I + +M T R +GFGFIT++ D+A ++ ++ +++ +
Sbjct: 28 LESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHMHGRELGNKVISVNK 87
Query: 184 AVPR 195
A P+
Sbjct: 88 AEPK 91
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 41.9 bits (94), Expect = 4e-04
Identities = 19/52 (36%), Positives = 29/52 (55%)
Frame = +3
Query: 264 IEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 419
++E L FS G +VSV V+ +K TG+ G+GF+EF + +R N
Sbjct: 35 VDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQTYN 86
Score = 36.7 bits (81), Expect = 0.015
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +3
Query: 261 DIEEEDLREYFST-FGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 419
D+ + L+E F + ++ VVTD TG+ +G+GFV+F + +R + N
Sbjct: 126 DVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMN 179
Score = 29.9 bits (64), Expect = 1.8
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +1
Query: 16 FYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQ 111
F + + V+ DP T RSKG+GF+ +++
Sbjct: 136 FRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAE 167
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +1
Query: 7 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY 105
L + Q GE+V V V+++ T + +G+GFI +
Sbjct: 40 LTSCFSQTGELVSVKVIRNKITGQPEGYGFIEF 72
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 41.5 bits (93), Expect = 5e-04
Identities = 18/52 (34%), Positives = 28/52 (53%)
Frame = +3
Query: 270 EEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQ 425
E+ L E FS G +V +V D+ + + +GFGFV F D + ++ N Q
Sbjct: 47 EQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALMEFNGQ 98
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/43 (41%), Positives = 29/43 (67%)
Frame = +1
Query: 7 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQ 135
L E + + G++V+ ++ D + RSKGFGF+T++ A DEAQ
Sbjct: 50 LSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASA---DEAQ 89
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 41.5 bits (93), Expect = 5e-04
Identities = 23/57 (40%), Positives = 35/57 (61%)
Frame = +3
Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIK 431
++ E+DLR+ F +FG++ V V D ETG +GFGFV+F + R L N Q++
Sbjct: 295 NMSEDDLRKVFESFGSVELVQVPRD-ETGLCKGFGFVQFARLEDA-RNALNLNGQLE 349
Score = 37.9 bits (84), Expect = 0.007
Identities = 19/69 (27%), Positives = 35/69 (50%)
Frame = +3
Query: 270 EEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQHLDV 449
E D+ E+FS G + V ++ D+ + + RG G+VEF D V + Q + V
Sbjct: 195 ERDVYEFFSRAGKVRDVRIIMDRISRRSRGIGYVEFYDTMSVPMAIALSGQPLLGQPVMV 254
Query: 450 KKAISKTDM 476
K + ++ ++
Sbjct: 255 KPSEAEKNL 263
Score = 34.3 bits (75), Expect = 0.082
Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Frame = +1
Query: 7 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN-NRPHKIDGRIVEPKR 183
L++ +E +G + V V +D +T KGFGF+ +++ A N N +I GR ++
Sbjct: 301 LRKVFESFGSVELVQVPRD-ETGLCKGFGFVQFARLEDARNALNLNGQLEIAGRAIKVSA 359
Query: 184 AVPREEIKRPEASAT 228
+ E+ PEA T
Sbjct: 360 VTDQTEV--PEAGQT 372
Score = 29.9 bits (64), Expect = 1.8
Identities = 10/31 (32%), Positives = 22/31 (70%)
Frame = +1
Query: 13 EFYEQWGEIVDVVVMKDPKTKRSKGFGFITY 105
EF+ + G++ DV ++ D ++RS+G G++ +
Sbjct: 200 EFFSRAGKVRDVRIIMDRISRRSRGIGYVEF 230
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 41.1 bits (92), Expect = 7e-04
Identities = 21/44 (47%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = +3
Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF-DDYD 389
D E+LRE F FG + V + D +G+ RGF FVEF D YD
Sbjct: 57 DCRPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYD 100
Score = 37.1 bits (82), Expect = 0.012
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Frame = +1
Query: 7 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHK-IDGRIVEPKR 183
L+E +E++G + DV + +D + + +GF F+ + A+ EAQ + + GR E
Sbjct: 63 LREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSMNRRSFAGR--EITV 120
Query: 184 AVPREEIKRPE 216
V E KRPE
Sbjct: 121 VVASESRKRPE 131
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 41.1 bits (92), Expect = 7e-04
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Frame = +1
Query: 1 SSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGRIVE 174
S L + + + G +VDV ++ D T RS+GFGF+T EA Q +I GR V+
Sbjct: 130 SELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMFNSSQIGGRTVK 188
Score = 37.1 bits (82), Expect = 0.012
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = +3
Query: 264 IEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFV 371
I +L + F G +V V +V DK T + RGFGFV
Sbjct: 127 ITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFV 162
Score = 35.9 bits (79), Expect = 0.027
Identities = 13/53 (24%), Positives = 27/53 (50%)
Frame = +3
Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 419
++ + L++ F ++ V+ ++ TG+ RGFGF+ F+ + V N
Sbjct: 229 NLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMN 281
Score = 31.9 bits (69), Expect = 0.44
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = +1
Query: 7 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGRIVEPKR 183
LK+ + ++ V+ + T RS+GFGFI++ A V A +++GR +
Sbjct: 235 LKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRALRLNL 294
Query: 184 AVPREE 201
A RE+
Sbjct: 295 ASEREK 300
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 41.1 bits (92), Expect = 7e-04
Identities = 19/71 (26%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Frame = +3
Query: 270 EEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKD-QHLD 446
E+ LR+ F FGN++ +++V DK + +GF F+ ++ + + + + D + +
Sbjct: 90 EDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQGMHGKFLDGRVIF 149
Query: 447 VKKAISKTDMS 479
V++A +++DMS
Sbjct: 150 VEEAKTRSDMS 160
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/70 (25%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Frame = +1
Query: 4 SLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY-SQAHMVDEAQNNRPHKIDGRIVEPK 180
+L++ +EQ+G ++ + ++ D R KGF F+ Y ++ + Q +DGR++ +
Sbjct: 92 TLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQGMHGKFLDGRVIFVE 151
Query: 181 RAVPREEIKR 210
A R ++ R
Sbjct: 152 EAKTRSDMSR 161
>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
protein GI:1279562 from [Medicago sativa]
Length = 557
Score = 41.1 bits (92), Expect = 7e-04
Identities = 19/46 (41%), Positives = 31/46 (67%)
Frame = +3
Query: 246 SWTKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 383
S ++ DI+ LRE+FS+ G I +VSV D++TG +G ++EF +
Sbjct: 411 SLSEDDIKNT-LREHFSSCGEIKNVSVPIDRDTGNSKGIAYLEFSE 455
Score = 37.9 bits (84), Expect = 0.007
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +3
Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 377
+IE D+ +F G +V V T+++ G RGFG VEF
Sbjct: 307 NIERADVENFFKEAGEVVDVRFSTNRDDGSFRGFGHVEF 345
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +1
Query: 1 SSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQ 111
++L+E + GEI +V V D T SKG ++ +S+
Sbjct: 419 NTLREHFSSCGEIKNVSVPIDRDTGNSKGIAYLEFSE 455
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/67 (22%), Positives = 31/67 (46%)
Frame = +1
Query: 1 SSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPK 180
+ ++ F+++ GE+VDV + +GFG + ++ + +A + GR +
Sbjct: 311 ADVENFFKEAGEVVDVRFSTNRDDGSFRGFGHVEFASSEEAQKALEFHGRPLLGREIRLD 370
Query: 181 RAVPREE 201
A R E
Sbjct: 371 IAQERGE 377
>At4g24270.2 68417.m03484 RNA recognition motif (RRM)-containing
protein low similarity to tumor-rejection antigen SART3
[Mus musculus] GI:7637845; contains INTERPRO:IPR000504
RNA-binding region RNP-1 (RNA recognition motif) domain
Length = 817
Score = 40.7 bits (91), Expect = 0.001
Identities = 15/39 (38%), Positives = 26/39 (66%)
Frame = +3
Query: 267 EEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 383
+EED+R++F G + S+ ++ K+TGK RG + +F D
Sbjct: 663 QEEDIRKFFGDDGGVDSIRILHHKDTGKPRGLAYADFVD 701
>At4g24270.1 68417.m03483 RNA recognition motif (RRM)-containing
protein low similarity to tumor-rejection antigen SART3
[Mus musculus] GI:7637845; contains INTERPRO:IPR000504
RNA-binding region RNP-1 (RNA recognition motif) domain
Length = 816
Score = 40.7 bits (91), Expect = 0.001
Identities = 15/39 (38%), Positives = 26/39 (66%)
Frame = +3
Query: 267 EEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 383
+EED+R++F G + S+ ++ K+TGK RG + +F D
Sbjct: 663 QEEDIRKFFGDDGGVDSIRILHHKDTGKPRGLAYADFVD 701
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 40.7 bits (91), Expect = 0.001
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Frame = +3
Query: 258 QDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQ-IKD 434
+ + +E+L + F FG S ++ D E GK +GFGFV F++ D R N + D
Sbjct: 233 ESLSDEELNKVFGEFGVTTSCVIMRDGE-GKSKGFGFVNFENSDDAARAVDALNGKTFDD 291
Query: 435 QHLDVKKAISKTD 473
+ V KA K++
Sbjct: 292 KEWFVGKAQKKSE 304
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/54 (35%), Positives = 29/54 (53%)
Frame = +3
Query: 258 QDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 419
+ + ++ LRE+F+ FG I S V+ D +G RG GFV F + R + N
Sbjct: 336 ESVTDDKLREHFAPFGTITSCKVMRD-PSGVSRGSGFVAFSTPEEATRAITEMN 388
Score = 38.3 bits (85), Expect = 0.005
Identities = 17/41 (41%), Positives = 27/41 (65%)
Frame = +3
Query: 258 QDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFD 380
+ I+ + L E FS FG I+S V D +G+ +G+GFV++D
Sbjct: 142 KSIDHKALHETFSAFGPILSCKVAVDP-SGQSKGYGFVQYD 181
Score = 37.1 bits (82), Expect = 0.012
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = +1
Query: 1 SSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 138
S L E + Q G++V V V +D T+RS G+G++ Y+ A N
Sbjct: 59 SQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALN 104
Score = 30.7 bits (66), Expect = 1.0
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +3
Query: 264 IEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 377
+ + L E F+ G +VSV V D T + G+G+V +
Sbjct: 56 VTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNY 93
Score = 30.3 bits (65), Expect = 1.3
Identities = 20/79 (25%), Positives = 39/79 (49%)
Frame = +1
Query: 7 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 186
L + + ++G V+M+D + K SKGFGF+ + + D+A ++G+ + K
Sbjct: 240 LNKVFGEFGVTTSCVIMRDGEGK-SKGFGFVNFENS---DDAA-RAVDALNGKTFDDKEW 294
Query: 187 VPREEIKRPEASATVKKLF 243
+ K+ E +K+ F
Sbjct: 295 FVGKAQKKSERETELKQKF 313
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 40.3 bits (90), Expect = 0.001
Identities = 16/39 (41%), Positives = 26/39 (66%)
Frame = +3
Query: 258 QDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVE 374
+D +++LR +FS G + V V TD+ETG RGF +++
Sbjct: 492 EDEIKKELRSHFSKCGEVTRVHVPTDRETGASRGFAYID 530
Score = 29.5 bits (63), Expect = 2.3
Identities = 18/64 (28%), Positives = 31/64 (48%)
Frame = +1
Query: 7 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 186
L+ + + GE+ V V D +T S+GF +I + DEA +I G + + +
Sbjct: 499 LRSHFSKCGEVTRVHVPTDRETGASRGFAYIDLTSG--FDEALQLSGSEIGGGNIHVEES 556
Query: 187 VPRE 198
PR+
Sbjct: 557 RPRD 560
>At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 310
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/37 (45%), Positives = 24/37 (64%)
Frame = +3
Query: 309 IVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 419
IVSV V+ +K G G+GFVEF+ +D D+V + N
Sbjct: 129 IVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLREFN 165
Score = 36.7 bits (81), Expect = 0.015
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +3
Query: 261 DIEEEDLREYFST-FGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 419
D+ + L E FS + ++ + VV D TG+ +G+GFV F D + + + N
Sbjct: 207 DVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMN 260
Score = 28.3 bits (60), Expect = 5.4
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Frame = +1
Query: 16 FYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN-RPHKIDGRIVEPKRAVP 192
F E++ + V+ D T RSKG+GF+ + + +A K R + A P
Sbjct: 217 FSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATP 276
Query: 193 RE 198
R+
Sbjct: 277 RK 278
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/37 (45%), Positives = 24/37 (64%)
Frame = +3
Query: 309 IVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 419
IVSV V+ +K G G+GFVEF+ +D D+V + N
Sbjct: 129 IVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLREFN 165
Score = 36.7 bits (81), Expect = 0.015
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +3
Query: 261 DIEEEDLREYFST-FGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 419
D+ + L E FS + ++ + VV D TG+ +G+GFV F D + + + N
Sbjct: 207 DVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMN 260
Score = 30.7 bits (66), Expect = 1.0
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = +3
Query: 264 IEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 377
+ +EDL++ F+ FG IVSV + K G GFV+F
Sbjct: 315 VTDEDLKQPFNEFGEIVSVKIPVGK------GCGFVQF 346
Score = 28.3 bits (60), Expect = 5.4
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Frame = +1
Query: 16 FYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN-RPHKIDGRIVEPKRAVP 192
F E++ + V+ D T RSKG+GF+ + + +A K R + A P
Sbjct: 217 FSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATP 276
Query: 193 RE 198
R+
Sbjct: 277 RK 278
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 40.3 bits (90), Expect = 0.001
Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Frame = +3
Query: 270 EEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQ-HLD 446
+ DL+ F FG I S V+ D E GK R FGFV F+ + + N + D+ L
Sbjct: 132 DADLKRLFGEFGEITSAVVMKDGE-GKSRRFGFVNFEKAEAAVTAIEKMNGVVVDEKELH 190
Query: 447 VKKAISKTD 473
V +A KT+
Sbjct: 191 VGRAQRKTN 199
Score = 37.9 bits (84), Expect = 0.007
Identities = 22/60 (36%), Positives = 35/60 (58%)
Frame = +1
Query: 1 SSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPK 180
+ LK + ++GEI VVMKD + K S+ FGF+ + +A EA K++G +V+ K
Sbjct: 133 ADLKRLFGEFGEITSAVVMKDGEGK-SRRFGFVNFEKA----EAAVTAIEKMNGVVVDEK 187
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/52 (34%), Positives = 31/52 (59%)
Frame = +3
Query: 264 IEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 419
+++E L+E FS +GN+ S V+ + + G RGFGFV + + + R + N
Sbjct: 343 VDDEKLKEMFSEYGNVTSSKVMLNPQ-GMSRGFGFVAYSNPEEALRALSEMN 393
Score = 38.7 bits (86), Expect = 0.004
Identities = 18/39 (46%), Positives = 27/39 (69%)
Frame = +3
Query: 264 IEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFD 380
I+ + L E FS+FG I+S V D TG+ +G+GFV+F+
Sbjct: 147 IDNKALFETFSSFGTILSCKVAMDV-TGRSKGYGFVQFE 184
Score = 36.3 bits (80), Expect = 0.020
Identities = 23/82 (28%), Positives = 37/82 (45%)
Frame = +1
Query: 7 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 186
LKE + ++G + VM +P+ S+GFGF+ YS A + K+ GR
Sbjct: 348 LKEMFSEYGNVTSSKVMLNPQGM-SRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIAL 406
Query: 187 VPREEIKRPEASATVKKLFVAG 252
R+E +R A ++ G
Sbjct: 407 AQRKEDRRAHLQALFSQIRAPG 428
Score = 30.7 bits (66), Expect = 1.0
Identities = 20/71 (28%), Positives = 36/71 (50%)
Frame = +1
Query: 4 SLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKR 183
+L E + +G I+ V D T RSKG+GF+ + + +E+ K++G ++ K+
Sbjct: 151 ALFETFSSFGTILSCKVAMDV-TGRSKGYGFVQFEK----EESAQAAIDKLNGMLMNDKQ 205
Query: 184 AVPREEIKRPE 216
I+R E
Sbjct: 206 VFVGHFIRRQE 216
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 39.9 bits (89), Expect = 0.002
Identities = 16/37 (43%), Positives = 24/37 (64%)
Frame = +3
Query: 309 IVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 419
IVS+ V+ +K G G+GFVEF+ +D D+V + N
Sbjct: 131 IVSLKVIRNKHNGSSEGYGFVEFESHDVADKVLQEFN 167
Score = 36.3 bits (80), Expect = 0.020
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +3
Query: 261 DIEEEDLREYFST-FGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 419
D+ + L E FS + ++ + VV D TG+ +G+GFV F D + + + N
Sbjct: 209 DVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMN 262
Score = 31.9 bits (69), Expect = 0.44
Identities = 17/38 (44%), Positives = 23/38 (60%)
Frame = +3
Query: 264 IEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 377
+ +EDL++ FS FG IVSV + K G GFV+F
Sbjct: 317 VTDEDLKQPFSEFGEIVSVKIPVGK------GCGFVQF 348
Score = 28.3 bits (60), Expect = 5.4
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Frame = +1
Query: 16 FYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN-RPHKIDGRIVEPKRAVP 192
F E++ + V+ D T RSKG+GF+ + + +A K R + A P
Sbjct: 219 FSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATP 278
Query: 193 RE 198
R+
Sbjct: 279 RK 280
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 39.9 bits (89), Expect = 0.002
Identities = 15/41 (36%), Positives = 25/41 (60%)
Frame = +3
Query: 258 QDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFD 380
++ E+++L F FG ++S V DK TG + FGF+ +D
Sbjct: 348 REFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYD 388
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +1
Query: 19 YEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 138
++ +G+++ V D T SK FGFI+Y A N
Sbjct: 359 FQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAIN 398
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 39.9 bits (89), Expect = 0.002
Identities = 15/41 (36%), Positives = 25/41 (60%)
Frame = +3
Query: 258 QDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFD 380
++ E+++L F FG ++S V DK TG + FGF+ +D
Sbjct: 339 REFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYD 379
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +1
Query: 19 YEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 138
++ +G+++ V D T SK FGFI+Y A N
Sbjct: 350 FQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAIN 389
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 39.5 bits (88), Expect = 0.002
Identities = 16/35 (45%), Positives = 22/35 (62%)
Frame = +3
Query: 273 EDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 377
E LR F+ FG + VVTD+ +G +GFGFV +
Sbjct: 70 EGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRY 104
Score = 37.9 bits (84), Expect = 0.007
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Frame = +1
Query: 7 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHK-IDGRIVEPKR 183
L+ + Q+GE+ D V+ D + SKGFGF+ Y+ + K +DG ++ +
Sbjct: 72 LRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIAGMDGKFLDGWVIFAEY 131
Query: 184 AVPREE 201
A PRE+
Sbjct: 132 ARPREQ 137
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/47 (36%), Positives = 29/47 (61%)
Frame = +3
Query: 264 IEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRV 404
++E L F+ G +VS V+ +K+TG+ G+GF+EF + +RV
Sbjct: 73 MDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERV 119
Score = 35.1 bits (77), Expect = 0.047
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +3
Query: 261 DIEEEDLREYF-STFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 419
D+ + L E F +++ ++ VV D+ TG+ +G+GFV F D R + N
Sbjct: 165 DVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMN 218
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Frame = +1
Query: 31 GEIVDVVVMKDPKTKRSKGFGFI---TYSQAHMVDEAQNNRP 147
GE+V V+++ +T + +G+GFI +++ A V + NN P
Sbjct: 86 GEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVLQTFNNAP 127
>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 306
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/47 (36%), Positives = 29/47 (61%)
Frame = +3
Query: 264 IEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRV 404
++E L F+ G +VS V+ +K+TG+ G+GF+EF + +RV
Sbjct: 73 MDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERV 119
Score = 35.1 bits (77), Expect = 0.047
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +3
Query: 261 DIEEEDLREYF-STFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 419
D+ + L E F +++ ++ VV D+ TG+ +G+GFV F D R + N
Sbjct: 165 DVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMN 218
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Frame = +1
Query: 31 GEIVDVVVMKDPKTKRSKGFGFI---TYSQAHMVDEAQNNRP 147
GE+V V+++ +T + +G+GFI +++ A V + NN P
Sbjct: 86 GEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVLQTFNNAP 127
>At1g07350.1 68414.m00783 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 382
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = +3
Query: 264 IEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQI-KDQH 440
+ E DL ++F+ G + V +V D T + RGFGF+ +R +H + + +
Sbjct: 86 VTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLDHSVLQGRV 145
Query: 441 LDVKKA 458
+ V+KA
Sbjct: 146 ITVEKA 151
Score = 38.7 bits (86), Expect = 0.004
Identities = 17/61 (27%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Frame = +1
Query: 7 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKI-DGRIVEPKR 183
L++ + + G++ DV ++ DP T+ S+GFGFI+ + + H + GR++ ++
Sbjct: 91 LEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLDHSVLQGRVITVEK 150
Query: 184 A 186
A
Sbjct: 151 A 151
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 39.1 bits (87), Expect = 0.003
Identities = 19/56 (33%), Positives = 34/56 (60%)
Frame = +1
Query: 7 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVE 174
L + ++G++VDV + +D +T S+GF F+ Y DEA + ++DGR+V+
Sbjct: 32 LYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYK---DEA-HKAVERLDGRVVD 83
Score = 37.1 bits (82), Expect = 0.012
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +3
Query: 273 EDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKD 434
+DL F+ +G +V V + D+ TG RGF FV + D + + + ++ D
Sbjct: 30 DDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDGRVVD 83
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 39.1 bits (87), Expect = 0.003
Identities = 19/56 (33%), Positives = 34/56 (60%)
Frame = +1
Query: 7 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVE 174
L + ++G++VDV + +D +T S+GF F+ Y DEA + ++DGR+V+
Sbjct: 32 LYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYK---DEA-HKAVERLDGRVVD 83
Score = 37.1 bits (82), Expect = 0.012
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +3
Query: 273 EDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKD 434
+DL F+ +G +V V + D+ TG RGF FV + D + + + ++ D
Sbjct: 30 DDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDGRVVD 83
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 39.1 bits (87), Expect = 0.003
Identities = 16/39 (41%), Positives = 25/39 (64%)
Frame = +3
Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 377
++ E LR+ F FG + V + D ETG+ +GFGF++F
Sbjct: 275 NMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQF 313
Score = 35.9 bits (79), Expect = 0.027
Identities = 13/38 (34%), Positives = 24/38 (63%)
Frame = +3
Query: 270 EEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 383
E D+ E+FS G + V ++ D+ + + +G G++EF D
Sbjct: 181 ERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYD 218
Score = 34.3 bits (75), Expect = 0.082
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Frame = +1
Query: 7 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQ--NNRPHKIDGRIVE 174
L++ +E +G + V + DP+T + KGFGFI + Q AQ N +I GR ++
Sbjct: 281 LRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAAQIALNGKLEIAGRTIK 338
Score = 31.5 bits (68), Expect = 0.58
Identities = 12/31 (38%), Positives = 22/31 (70%)
Frame = +1
Query: 13 EFYEQWGEIVDVVVMKDPKTKRSKGFGFITY 105
EF+ + G++ DV ++ D ++RSKG G+I +
Sbjct: 186 EFFSKAGKVRDVRLIMDRNSRRSKGVGYIEF 216
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 39.1 bits (87), Expect = 0.003
Identities = 19/54 (35%), Positives = 25/54 (46%)
Frame = +3
Query: 258 QDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 419
+D DL E F FG + V D++T RGFGFV F + R + N
Sbjct: 183 EDTRGPDLMELFRPFGAVTRCHVAIDQKTSMSRGFGFVSFVSREDAQRAINKLN 236
Score = 31.9 bits (69), Expect = 0.44
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +1
Query: 7 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN-RPHKIDGRIVEPKR 183
L E + +G + V D KT S+GFGF+++ A N + D I+ +
Sbjct: 190 LMELFRPFGAVTRCHVAIDQKTSMSRGFGFVSFVSREDAQRAINKLNGYGYDNLILRVEW 249
Query: 184 AVPREEI 204
+ P+ ++
Sbjct: 250 STPKTQL 256
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 39.1 bits (87), Expect = 0.003
Identities = 18/56 (32%), Positives = 36/56 (64%)
Frame = +1
Query: 4 SLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIV 171
+L+ +E +GE+V+V ++ D +KRSKG+ F+ Y+ +EA +++G+I+
Sbjct: 297 TLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYT----TEEAAGTALKEMNGKII 348
Score = 36.3 bits (80), Expect = 0.020
Identities = 15/53 (28%), Positives = 28/53 (52%)
Frame = +3
Query: 270 EEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQI 428
E+ LR F FG +V V ++ DK + + +G+ F+E+ + + N +I
Sbjct: 295 EKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKEMNGKI 347
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 39.1 bits (87), Expect = 0.003
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = +3
Query: 270 EEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKD 434
E+ LRE S +G I ++ +V TG RG+GFVE++ + R +H + D
Sbjct: 77 EDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYETEKEMLRAYEDAHHSLID 131
Score = 31.1 bits (67), Expect = 0.76
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +1
Query: 4 SLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHK-IDGR 165
+L+E ++G I ++ +++ T S+G+GF+ Y + A + H IDGR
Sbjct: 79 TLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYETEKEMLRAYEDAHHSLIDGR 133
>At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 451
Score = 39.1 bits (87), Expect = 0.003
Identities = 20/70 (28%), Positives = 35/70 (50%)
Frame = +3
Query: 234 KVVCSWTKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQ 413
K+ S DI+ + L E+FS FG I + DK TG+ +GF + + + L+
Sbjct: 228 KIYVSNVSADIDPQKLLEFFSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKK-ALE 286
Query: 414 QNHQIKDQHL 443
+ H+ + H+
Sbjct: 287 EPHKTFEGHV 296
Score = 33.1 bits (72), Expect = 0.19
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = +1
Query: 4 SLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRI 168
SL + ++Q+GEI D + D + +SKG+GFI + A KI R+
Sbjct: 143 SLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNALKQPQKKIGTRM 197
Score = 32.3 bits (70), Expect = 0.33
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +1
Query: 7 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHK-IDGRIVEPKR 183
L EF+ ++GEI + + D T R KGF Y +A PHK +G ++ +
Sbjct: 243 LLEFFSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKAL-EEPHKTFEGHVLHCHK 301
Query: 184 A 186
A
Sbjct: 302 A 302
>At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28)
nearly identical to SC35-like splicing factor SCL28, 28
kD [Arabidopsis thaliana] GI:9843655; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 236
Score = 38.7 bits (86), Expect = 0.004
Identities = 17/56 (30%), Positives = 29/56 (51%)
Frame = +3
Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQI 428
D DLR+ F FG + + + + TG+ RGFGFV++ + + NH++
Sbjct: 57 DARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKRMNHKV 112
Score = 38.7 bits (86), Expect = 0.004
Identities = 16/54 (29%), Positives = 30/54 (55%)
Frame = +1
Query: 1 SSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDG 162
+ L++ +E++G + D+ + ++ T +GFGF+ Y A EA HK+ G
Sbjct: 61 NDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKRMNHKVIG 114
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 38.7 bits (86), Expect = 0.004
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +3
Query: 261 DIEEEDLREYFST-FGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 419
D+ + L E FS + ++ S VV D TG+ +G+GFV F D + R + N
Sbjct: 212 DVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMN 265
Score = 35.9 bits (79), Expect = 0.027
Identities = 19/41 (46%), Positives = 25/41 (60%)
Frame = +3
Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 383
D+ +EDLR+ FS FG +VSV + K G GFV+F D
Sbjct: 331 DVIDEDLRQPFSQFGEVVSVKIPVGK------GCGFVQFAD 365
Score = 35.5 bits (78), Expect = 0.035
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = +3
Query: 264 IEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 377
++E L FS G + SV V+ +K T + G+GFVEF
Sbjct: 119 MDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEF 156
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = +1
Query: 7 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 141
L + GE+ V V+++ T +S+G+GF+ + +E N
Sbjct: 124 LHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEEVLQN 168
Score = 27.5 bits (58), Expect = 9.4
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 8/70 (11%)
Frame = +1
Query: 16 FYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQ--------NNRPHKIDGRIV 171
F +++ + V+ D T RSKG+GF+ + + A +NR ++ I
Sbjct: 222 FSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVG--IA 279
Query: 172 EPKRAVPREE 201
PKRA+ ++
Sbjct: 280 TPKRAIANQQ 289
>At1g07350.2 68414.m00784 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 129
Score = 38.7 bits (86), Expect = 0.004
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = +3
Query: 264 IEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQI 428
+ E DL ++F+ G + V +V D T + RGFGF+ +R +H +
Sbjct: 56 VTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLDHSV 110
Score = 37.1 bits (82), Expect = 0.012
Identities = 16/56 (28%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Frame = +1
Query: 7 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKI-DGRIV 171
L++ + + G++ DV ++ DP T+ S+GFGFI+ + + H + GR++
Sbjct: 61 LEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLDHSVLQGRVI 116
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 38.3 bits (85), Expect = 0.005
Identities = 17/55 (30%), Positives = 29/55 (52%)
Frame = +3
Query: 255 KQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 419
+Q ++E + F+ G S V+ +K TG+ G+GF+EF + +RV N
Sbjct: 68 QQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHSVAERVLQTYN 122
Score = 37.5 bits (83), Expect = 0.009
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +3
Query: 294 STFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQ 425
+ +G++ VV D+ TG+ +G+GFV F D + R + N Q
Sbjct: 176 NVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNGQ 219
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 16 FYEQWGEIVDVVVMKDPKTKRSKGFGFITYS 108
F +G + V+ D T RSKG+GF+ ++
Sbjct: 174 FKNVYGSVKGAKVVLDRTTGRSKGYGFVRFA 204
>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
[Triticum aestivum] GI:1737492; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 38.3 bits (85), Expect = 0.005
Identities = 20/60 (33%), Positives = 31/60 (51%)
Frame = +3
Query: 264 IEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQHL 443
+ EE L FS FG ++ SV+ G+ RGF F+EF+ D R L + ++ Q +
Sbjct: 28 VSEEMLFLMFSDFGKVIR-SVLAKDFRGESRGFAFIEFESADSAGRAMLHMDGRLIGQKI 86
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 38.3 bits (85), Expect = 0.005
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +3
Query: 261 DIEEEDLREYF-STFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQ 425
D+ + L E F + + ++ VV D+ TG+ +G+GFV F D R + N Q
Sbjct: 183 DVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTEMNGQ 238
Score = 33.5 bits (73), Expect = 0.14
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = +3
Query: 264 IEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDR 401
++E L F G + V+ +K+ G G+GF+EF ++ +R
Sbjct: 91 MDENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVNHATAER 136
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +3
Query: 258 QDIEEEDLREYFSTFGNIVSVSVVTDKETG 347
Q + E+DL+ F FG +V V + K G
Sbjct: 287 QSVTEDDLKSVFGQFGELVHVKIPAGKRCG 316
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 38.3 bits (85), Expect = 0.005
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +3
Query: 258 QDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 377
+++ E L+E F FG ++ V + D+ RG G+VEF
Sbjct: 107 RNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEF 146
Score = 35.1 bits (77), Expect = 0.047
Identities = 18/71 (25%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Frame = +1
Query: 7 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRP-HKIDGRIVEPKR 183
LKE + +GE++ V + D +G G++ + ++AQ +IDG++V+
Sbjct: 114 LKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYMDGAQIDGKVVKATF 173
Query: 184 AV-PREEIKRP 213
+ PR+++ P
Sbjct: 174 TLPPRQKVSSP 184
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 38.3 bits (85), Expect = 0.005
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +3
Query: 258 QDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 377
+++ E L+E F FG ++ V + D+ RG G+VEF
Sbjct: 107 RNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEF 146
Score = 35.1 bits (77), Expect = 0.047
Identities = 18/71 (25%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Frame = +1
Query: 7 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRP-HKIDGRIVEPKR 183
LKE + +GE++ V + D +G G++ + ++AQ +IDG++V+
Sbjct: 114 LKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYMDGAQIDGKVVKATF 173
Query: 184 AV-PREEIKRP 213
+ PR+++ P
Sbjct: 174 TLPPRQKVSSP 184
>At5g65260.1 68418.m08209 polyadenylate-binding protein family
protein / PABP family protein low similarity to
poly(A)-binding protein II [Drosophila melanogaster]
GI:6007612; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain
Length = 220
Score = 37.9 bits (84), Expect = 0.007
Identities = 17/59 (28%), Positives = 34/59 (57%)
Frame = +3
Query: 273 EDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQHLDV 449
E+++++F T G + V+++TDK G+ +GF +VEF + + V ++ + L V
Sbjct: 106 EEVQQHFQTCGTVHRVTILTDK-FGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKV 163
>At5g41690.1 68418.m05067 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GI:7673355 from [Nicotiana tabacum]; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 620
Score = 37.5 bits (83), Expect = 0.009
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Frame = +3
Query: 276 DLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQH---LD 446
D+ ++F+ G +VS+ ++ + E GK G+GFVEF D + +N + H +D
Sbjct: 259 DIFDFFNCVGEVVSIRLMVNHE-GKHVGYGFVEFASADETKKALENKNGEYLHDHKIFID 317
Query: 447 VKK 455
V K
Sbjct: 318 VAK 320
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 37.5 bits (83), Expect = 0.009
Identities = 15/41 (36%), Positives = 25/41 (60%)
Frame = +3
Query: 258 QDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFD 380
++ +++L F +FG ++S V DK TG + FGFV +D
Sbjct: 358 REFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYD 398
>At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing
protein similar to ssRNA-binding protein [Dictyostelium
discoideum] GI:1546894; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 245
Score = 37.5 bits (83), Expect = 0.009
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = +3
Query: 234 KVVCSWTKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 377
++ C ++ ++ L + F+ F V+ DK TGK +G+GFV F
Sbjct: 138 RLFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRTGKTKGYGFVSF 185
>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 347
Score = 37.5 bits (83), Expect = 0.009
Identities = 18/35 (51%), Positives = 21/35 (60%)
Frame = +3
Query: 273 EDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 377
E L F +G I +VV DK TGK +GFGFV F
Sbjct: 118 ETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMF 152
Score = 32.7 bits (71), Expect = 0.25
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +1
Query: 19 YEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGR 165
+E +GEI + V+ D T ++KGFGF+ + EA +I R
Sbjct: 124 FEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKEPKKRILNR 172
>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 343
Score = 37.5 bits (83), Expect = 0.009
Identities = 18/35 (51%), Positives = 21/35 (60%)
Frame = +3
Query: 273 EDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 377
E L F +G I +VV DK TGK +GFGFV F
Sbjct: 118 ETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMF 152
Score = 32.7 bits (71), Expect = 0.25
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +1
Query: 19 YEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGR 165
+E +GEI + V+ D T ++KGFGF+ + EA +I R
Sbjct: 124 FEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKEPKKRILNR 172
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 37.1 bits (82), Expect = 0.012
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = +3
Query: 279 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFD-DYDPVDRVCLQQNHQIKDQHLDVKK 455
L F FG+I+S VV +E G+ +GFGFV+FD + V + + L V K
Sbjct: 128 LERMFCPFGSILSCKVV--EENGQSKGFGFVQFDTEQSAVSARSALHGSMVYGKKLFVAK 185
Query: 456 AISKTD 473
I+K +
Sbjct: 186 FINKDE 191
Score = 37.1 bits (82), Expect = 0.012
Identities = 18/42 (42%), Positives = 25/42 (59%)
Frame = +3
Query: 258 QDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 383
+ + E LRE F +G IVS V+ E G+ +GFGFV F +
Sbjct: 313 ESMNETRLREIFGCYGQIVSAKVMC-HENGRSKGFGFVCFSN 353
Score = 34.3 bits (75), Expect = 0.082
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Frame = +3
Query: 258 QDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQ-NHQIKD 434
+ + ++ L FS +G + SV V+ D G+ RGFGFV F + + + Q+
Sbjct: 211 ETVTDDCLHTLFSQYGTVSSVVVMRDG-MGRSRGFGFVNFCNPENAKKAMESLCGLQLGS 269
Query: 435 QHLDVKKAISKTD 473
+ L V KA+ K +
Sbjct: 270 KKLFVGKALKKDE 282
Score = 33.5 bits (73), Expect = 0.14
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Frame = +1
Query: 7 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN-RPHKIDGRIVEPKR 183
L+E + +G+IV VM + RSKGFGF+ +S +A+ +DG+ + +
Sbjct: 320 LREIFGCYGQIVSAKVMCH-ENGRSKGFGFVCFSNCEESKQAKRYLNGFLVDGKPIVVRV 378
Query: 184 AVPREE-IKR 210
A +E+ IKR
Sbjct: 379 AERKEDRIKR 388
Score = 32.7 bits (71), Expect = 0.25
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = +3
Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNH 422
D+ E+DL + FS +VSV + + TGK + ++ FD + NH
Sbjct: 31 DVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSASNAMTRLNH 84
Score = 32.7 bits (71), Expect = 0.25
Identities = 21/79 (26%), Positives = 38/79 (48%)
Frame = +1
Query: 7 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 186
L + Q+G + VVVM+D RS+GFGF+ + +A + + G + K+
Sbjct: 218 LHTLFSQYGTVSSVVVMRDGMG-RSRGFGFVNFCNPENAKKAMES----LCGLQLGSKKL 272
Query: 187 VPREEIKRPEASATVKKLF 243
+ +K+ E +K+ F
Sbjct: 273 FVGKALKKDERREMLKQKF 291
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 37.1 bits (82), Expect = 0.012
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = +3
Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 377
++ + L + FS F + V+ D++TG+ RGFGFV F
Sbjct: 154 EVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSF 192
Score = 31.5 bits (68), Expect = 0.58
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +1
Query: 1 SSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 138
++L + + + D VM D KT RS+GFGF+++ A N
Sbjct: 158 ATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIN 203
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/42 (28%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Frame = +1
Query: 52 VMKDPKTKRSKGFGFITYS---QAHMVDEAQNNRPHKIDGRI 168
V+++ + +R KGFGF+ Y+ +A + + N +P+ + +I
Sbjct: 292 VIEEVRVQRDKGFGFVRYNTHPEAALAIQMGNTQPYLFNRQI 333
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 37.1 bits (82), Expect = 0.012
Identities = 17/39 (43%), Positives = 26/39 (66%)
Frame = +3
Query: 264 IEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFD 380
I+ + L E FS+FG I+S V D G+ +G+GFV+F+
Sbjct: 143 IDNKALYETFSSFGTILSCKVAMDV-VGRSKGYGFVQFE 180
Score = 31.5 bits (68), Expect = 0.58
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = +1
Query: 7 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGR 165
LKE + ++G + VM + + S+GFGF+ YS A K+ GR
Sbjct: 344 LKEMFSEYGNVTSCKVMMNSQGL-SRGFGFVAYSNPEEALLAMKEMNGKMIGR 395
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/33 (39%), Positives = 23/33 (69%)
Frame = +1
Query: 7 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY 105
LK+ + ++G+I VVMKD ++ S+ FGF+ +
Sbjct: 241 LKKTFGKYGDISSAVVMKD-QSGNSRSFGFVNF 272
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 36.7 bits (81), Expect = 0.015
Identities = 14/42 (33%), Positives = 26/42 (61%)
Frame = +1
Query: 7 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 132
LK+ + GE+ +V ++K+P+TK+SKG F+ ++ A
Sbjct: 230 LKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRFATVEQAKRA 271
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 36.7 bits (81), Expect = 0.015
Identities = 18/42 (42%), Positives = 24/42 (57%)
Frame = +3
Query: 246 SWTKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFV 371
SWT + E L F G++V VV D +TG+ RG+GFV
Sbjct: 185 SWT---VTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFV 223
Score = 35.1 bits (77), Expect = 0.047
Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Frame = +1
Query: 4 SLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY-SQAHMVDEAQNNRPHKIDGRIV 171
SL + + G++V V+ D T RS+G+GF+ Y S+A M ++ +++GR +
Sbjct: 192 SLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGFELEGRAI 248
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +3
Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYD 389
+++ L + F N V V+ +++TG+ RGF FV + +
Sbjct: 95 NVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVE 137
>At5g51120.1 68418.m06339 polyadenylate-binding protein, putative /
PABP, putative contains similarity to poly(A)-binding
protein II [Mus musculus] GI:2351846; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 227
Score = 36.3 bits (80), Expect = 0.020
Identities = 15/59 (25%), Positives = 35/59 (59%)
Frame = +3
Query: 273 EDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQHLDV 449
E+++++F + G + V+++TDK G+ +GF +VEF + + V + ++ + + V
Sbjct: 117 EEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEVEAVQNSLILNESELHGRQIKV 174
>At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing
protein low similarity to heterogeneous nuclear
ribonucleoprotein G [Mus musculus] GI:5579009; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 152
Score = 36.3 bits (80), Expect = 0.020
Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Frame = +1
Query: 7 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYS---QAHMVDEAQNNRPHKIDGRIV 171
LK + +GEI +V ++KD KRSKG+ FI ++ A + E + R + +GR++
Sbjct: 56 LKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLAIETMDRRMY--NGRMI 111
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 36.3 bits (80), Expect = 0.020
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = +1
Query: 7 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 132
L+ + + G++V V + P T +S GFGF+T+S V+ A
Sbjct: 193 LENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAA 234
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 36.3 bits (80), Expect = 0.020
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = +3
Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 377
++ + L + FS F + V+ D++TG+ RGFGFV F
Sbjct: 158 EVTDAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSF 196
Score = 31.5 bits (68), Expect = 0.58
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +1
Query: 1 SSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 138
++L + + + D VM D KT RS+GFGF+++ A N
Sbjct: 162 AALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIN 207
>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
from [Homo sapiens], RNA-binding protein Y14 [Xenopus
laevis] GI:11034807; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 202
Score = 36.3 bits (80), Expect = 0.020
Identities = 17/77 (22%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Frame = +3
Query: 237 VVCSWTKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQ 416
++ S ++ +EED+ F FG I ++++ D+ +G +G+ +E++ +
Sbjct: 97 ILVSGVHEETQEEDITNAFGDFGEIKNLNLNLDRRSGYVKGYALIEYEKKEEAQSAISAM 156
Query: 417 N-HQIKDQHLDVKKAIS 464
N ++ Q++ V A S
Sbjct: 157 NGAELLTQNVSVDWAFS 173
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 36.3 bits (80), Expect = 0.020
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +3
Query: 261 DIEEEDLREYFS-TFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 419
D+ + L E F+ + ++ VV D TG+ +G+GFV F D + R + N
Sbjct: 223 DVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTEMN 276
Score = 33.9 bits (74), Expect = 0.11
Identities = 18/39 (46%), Positives = 23/39 (58%)
Frame = +3
Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 377
D+ EEDL + FS FG +VSV + K G GFV+F
Sbjct: 337 DVTEEDLMQPFSDFGEVVSVKIPVGK------GCGFVQF 369
Score = 33.5 bits (73), Expect = 0.14
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +3
Query: 264 IEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 377
++E L FS + SV V+ +K+T + G+GFVEF
Sbjct: 130 MDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEF 167
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 35.9 bits (79), Expect = 0.027
Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Frame = +1
Query: 4 SLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGRIV 171
+L + + Q+G+++ V V+ D R KGF ++T+S ++A +DGR+V
Sbjct: 36 TLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKALLELNAQLVDGRVV 92
>At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 35.5 bits (78), Expect = 0.035
Identities = 19/55 (34%), Positives = 28/55 (50%)
Frame = +1
Query: 4 SLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRI 168
+L E ++Q+GEI D + D + +SKG+GFI Y A KI R+
Sbjct: 155 TLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQPQKKIGSRM 209
Score = 34.7 bits (76), Expect = 0.062
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +3
Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFV 371
D + E L E F +G I V DK +GK +G+GF+
Sbjct: 150 DTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFI 186
Score = 34.3 bits (75), Expect = 0.082
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Frame = +3
Query: 234 KVVCSWTKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQ 413
K+ S +++ + L +FS FG I + DK TG+ +GF + + R L+
Sbjct: 246 KIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKR-ALE 304
Query: 414 QNHQIKDQH-LDVKKAI 461
+ H+ + H L +KAI
Sbjct: 305 EPHKTFEGHILHCQKAI 321
Score = 31.1 bits (67), Expect = 0.76
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +1
Query: 16 FYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHK-IDGRIVEPKRAV 189
F+ ++GEI + + D T R KGF Y + A PHK +G I+ ++A+
Sbjct: 264 FFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRAL-EEPHKTFEGHILHCQKAI 321
>At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 35.5 bits (78), Expect = 0.035
Identities = 19/55 (34%), Positives = 28/55 (50%)
Frame = +1
Query: 4 SLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRI 168
+L E ++Q+GEI D + D + +SKG+GFI Y A KI R+
Sbjct: 155 TLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQPQKKIGSRM 209
Score = 34.7 bits (76), Expect = 0.062
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +3
Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFV 371
D + E L E F +G I V DK +GK +G+GF+
Sbjct: 150 DTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFI 186
Score = 34.3 bits (75), Expect = 0.082
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Frame = +3
Query: 234 KVVCSWTKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQ 413
K+ S +++ + L +FS FG I + DK TG+ +GF + + R L+
Sbjct: 246 KIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKR-ALE 304
Query: 414 QNHQIKDQH-LDVKKAI 461
+ H+ + H L +KAI
Sbjct: 305 EPHKTFEGHILHCQKAI 321
Score = 31.1 bits (67), Expect = 0.76
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +1
Query: 16 FYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHK-IDGRIVEPKRAV 189
F+ ++GEI + + D T R KGF Y + A PHK +G I+ ++A+
Sbjct: 264 FFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRAL-EEPHKTFEGHILHCQKAI 321
>At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 35.5 bits (78), Expect = 0.035
Identities = 19/55 (34%), Positives = 28/55 (50%)
Frame = +1
Query: 4 SLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRI 168
+L E ++Q+GEI D + D + +SKG+GFI Y A KI R+
Sbjct: 155 TLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQPQKKIGSRM 209
Score = 34.7 bits (76), Expect = 0.062
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +3
Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFV 371
D + E L E F +G I V DK +GK +G+GF+
Sbjct: 150 DTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFI 186
Score = 34.3 bits (75), Expect = 0.082
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Frame = +3
Query: 234 KVVCSWTKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQ 413
K+ S +++ + L +FS FG I + DK TG+ +GF + + R L+
Sbjct: 246 KIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKR-ALE 304
Query: 414 QNHQIKDQH-LDVKKAI 461
+ H+ + H L +KAI
Sbjct: 305 EPHKTFEGHILHCQKAI 321
Score = 31.1 bits (67), Expect = 0.76
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +1
Query: 16 FYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHK-IDGRIVEPKRAV 189
F+ ++GEI + + D T R KGF Y + A PHK +G I+ ++A+
Sbjct: 264 FFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRAL-EEPHKTFEGHILHCQKAI 321
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 35.1 bits (77), Expect = 0.047
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +3
Query: 264 IEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFV 371
+ D+ FSTFG + V+V+ D+ T + RG FV
Sbjct: 68 LTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFV 103
Score = 32.7 bits (71), Expect = 0.25
Identities = 20/79 (25%), Positives = 37/79 (46%)
Frame = +1
Query: 1 SSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPK 180
S + + +G++ V V+KD T++S+G F+ Y D A+ R +D +I+ +
Sbjct: 71 SDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSRE--DAAKAAR--SMDAKILNGR 126
Query: 181 RAVPREEIKRPEASATVKK 237
+ AS +KK
Sbjct: 127 KLTVSIAADNGRASEFIKK 145
>At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 126
Score = 34.7 bits (76), Expect = 0.062
Identities = 13/55 (23%), Positives = 29/55 (52%)
Frame = +3
Query: 264 IEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQI 428
+ E L++ FS FG + +V ++ ++ T + G+G+V F+ + N ++
Sbjct: 69 VSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAMNGKV 123
>At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 172
Score = 34.7 bits (76), Expect = 0.062
Identities = 14/57 (24%), Positives = 29/57 (50%)
Frame = +3
Query: 264 IEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKD 434
+ E L++ FS FG + +V ++ ++ T + G+G+V F+ + N + D
Sbjct: 88 VSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAMNGKFFD 144
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 34.7 bits (76), Expect = 0.062
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Frame = +3
Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD-YDPVDRVCLQQNHQIKDQ 437
DI E ++ + FS +G +V + + K + G+ FVEF+D D D + + +
Sbjct: 17 DIREREVEDLFSKYGPVVQIDL---KIPPRPPGYAFVEFEDARDADDAIYGRDGYDFDGH 73
Query: 438 HLDVKKA 458
HL V+ A
Sbjct: 74 HLRVELA 80
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 34.7 bits (76), Expect = 0.062
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Frame = +3
Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD-YDPVDRVCLQQNHQIKDQ 437
DI E ++ + FS +G +V + + K + G+ FVEF+D D D + + +
Sbjct: 17 DIREREVEDLFSKYGPVVQIDL---KIPPRPPGYAFVEFEDARDADDAIYGRDGYDFDGH 73
Query: 438 HLDVKKA 458
HL V+ A
Sbjct: 74 HLRVELA 80
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 34.3 bits (75), Expect = 0.082
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +3
Query: 270 EEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYD 389
EEDL + + +G + V V+ ++ +G RGF F++F D
Sbjct: 311 EEDLYQILAEWGPLHHVRVIREQNSGISRGFAFIDFPTVD 350
Score = 34.3 bits (75), Expect = 0.082
Identities = 18/40 (45%), Positives = 22/40 (55%)
Frame = +3
Query: 258 QDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 377
+D +EE LR FS I + +V DK T RGF FV F
Sbjct: 467 EDADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHF 506
>At3g51950.1 68416.m05698 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM), PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 540
Score = 34.3 bits (75), Expect = 0.082
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +3
Query: 270 EEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN-HQIKDQHLD 446
EED+ YFSTFG + V + +KR FGFV F + V + + N H + D +
Sbjct: 272 EEDVSNYFSTFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKSILAKGNPHFVCDSRVL 327
Query: 447 VK 452
VK
Sbjct: 328 VK 329
>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 427
Score = 34.3 bits (75), Expect = 0.082
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +3
Query: 270 EEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 377
E ++ F ++G I V +VTD+ T K +G+ F+E+
Sbjct: 151 ESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEY 186
>At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 674
Score = 34.3 bits (75), Expect = 0.082
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +3
Query: 270 EEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 377
++ L +F+ FG ++ +VTD TG+ G ++EF
Sbjct: 529 KDSLSRHFNKFGEVLKAFIVTDPATGQPSGSAYIEF 564
Score = 29.1 bits (62), Expect = 3.1
Identities = 10/43 (23%), Positives = 23/43 (53%)
Frame = +1
Query: 4 SLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 132
SL + ++GE++ ++ DP T + G +I +++ + A
Sbjct: 531 SLSRHFNKFGEVLKAFIVTDPATGQPSGSAYIEFTRKEAAENA 573
>At1g45100.1 68414.m05170 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Nicotiana tabacum] GI:7673355, [Cucumis
sativus] GI:7528270; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 497
Score = 34.3 bits (75), Expect = 0.082
Identities = 15/68 (22%), Positives = 34/68 (50%)
Frame = +3
Query: 255 KQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKD 434
+ I+ D+ +F G +V V ++ + + GK G+GFVEF + ++ ++ + +
Sbjct: 255 RDSIQISDIINFFKDVGEVVHVRLIVNSQ-GKHAGWGFVEFASANEAEKALVKNGEYLHN 313
Query: 435 QHLDVKKA 458
+ + A
Sbjct: 314 YKISLDGA 321
Score = 31.5 bits (68), Expect = 0.58
Identities = 16/54 (29%), Positives = 29/54 (53%)
Frame = +3
Query: 279 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQH 440
++ +F+ +VSV +V + E GK G+GFVEF ++ ++N + H
Sbjct: 174 IKGFFNGVAQVVSVRLVVNHE-GKHVGYGFVEFASAYGANKALEEKNGEYLHNH 226
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 33.9 bits (74), Expect = 0.11
Identities = 24/62 (38%), Positives = 34/62 (54%)
Frame = +1
Query: 52 VMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAVPREEIKRPEASATV 231
++KD +T+R KGFGFIT+ D+AQ ++G+IV R + E K EA T
Sbjct: 97 LIKDQQTQRPKGFGFITFESE---DDAQ-KALKALNGKIVN-GRLIFVETAKEVEAPTTS 151
Query: 232 KK 237
K
Sbjct: 152 LK 153
Score = 32.3 bits (70), Expect = 0.33
Identities = 15/58 (25%), Positives = 30/58 (51%)
Frame = +3
Query: 270 EEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQHL 443
++ LR+ F+ F ++ D++T + +GFGF+ F+ D + N +I + L
Sbjct: 84 DQSLRQLFAPFARLIK-----DQQTQRPKGFGFITFESEDDAQKALKALNGKIVNGRL 136
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 33.9 bits (74), Expect = 0.11
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +3
Query: 258 QDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFD 380
++ +++L F +FG ++S V DK TG + FG + FD
Sbjct: 357 REFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGKLSFD 397
>At2g47310.1 68415.m05906 flowering time control protein-related /
FCA gamma-related
Length = 512
Score = 33.9 bits (74), Expect = 0.11
Identities = 11/36 (30%), Positives = 23/36 (63%)
Frame = +3
Query: 270 EEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 377
E D+R+ F +GN+ + + DK TG++ + F+++
Sbjct: 123 EYDIRQVFEKYGNVTEIILPKDKMTGERAAYCFIKY 158
>At5g10350.2 68418.m01201 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 202
Score = 33.5 bits (73), Expect = 0.14
Identities = 16/59 (27%), Positives = 32/59 (54%)
Frame = +3
Query: 273 EDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQHLDV 449
E+++ +F T G + V+++ DK G+ +GF +VEF + + V ++ + L V
Sbjct: 103 EEVQLHFQTCGTVNRVTILMDK-FGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKV 160
>At5g10350.1 68418.m01200 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 217
Score = 33.5 bits (73), Expect = 0.14
Identities = 16/59 (27%), Positives = 32/59 (54%)
Frame = +3
Query: 273 EDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQHLDV 449
E+++ +F T G + V+++ DK G+ +GF +VEF + + V ++ + L V
Sbjct: 103 EEVQLHFQTCGTVNRVTILMDK-FGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKV 160
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 33.5 bits (73), Expect = 0.14
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = +3
Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD-YDPVDRVCLQQNHQIKDQ 437
DI E ++ + FS +G +V + + K + G+ FVEFDD D D + + +
Sbjct: 17 DIREREVEDLFSKYGPVVQIDL---KVPPRPPGYAFVEFDDARDAEDAIHGRDGYDFDGH 73
Query: 438 HLDVKKA 458
L V+ A
Sbjct: 74 RLRVELA 80
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 33.5 bits (73), Expect = 0.14
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = +3
Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD-YDPVDRVCLQQNHQIKDQ 437
DI E ++ + FS +G +V + + K + G+ FVEFDD D D + + +
Sbjct: 17 DIREREVEDLFSKYGPVVQIDL---KVPPRPPGYAFVEFDDARDAEDAIHGRDGYDFDGH 73
Query: 438 HLDVKKA 458
L V+ A
Sbjct: 74 RLRVELA 80
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 33.5 bits (73), Expect = 0.14
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = +3
Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD-YDPVDRVCLQQNHQIKDQ 437
DI E ++ + FS +G +V + + K + G+ FVEFDD D D + + +
Sbjct: 17 DIREREVEDLFSKYGPVVQIDL---KVPPRPPGYAFVEFDDARDAEDAIHGRDGYDFDGH 73
Query: 438 HLDVKKA 458
L V+ A
Sbjct: 74 RLRVELA 80
>At5g12440.1 68418.m01462 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 552
Score = 33.1 bits (72), Expect = 0.19
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +3
Query: 267 EEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN-HQIKDQHL 443
++ED+ YFS FG + V + +KR FGFV F + V V + N H I D +
Sbjct: 272 KDEDVATYFSLFGTVQDVRIPYQ----QKRMFGFVSFAHPETVKVVLARGNPHFICDSRV 327
Query: 444 DVK 452
VK
Sbjct: 328 LVK 330
>At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 952
Score = 33.1 bits (72), Expect = 0.19
Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Frame = +1
Query: 10 KEFYEQWGEIVDVVVMKDP-KTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPK 180
+EF+ Q+G I +V+++K + +++ GFGFI Y+ +A + GRI+ K
Sbjct: 182 EEFFRQFGPIENVILIKGHHEVEKNAGFGFIIYAAEKSAMKAVEFDGVEFHGRILTVK 239
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 33.1 bits (72), Expect = 0.19
Identities = 19/73 (26%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Frame = +1
Query: 7 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQ-AHMVDEAQNNRPHKIDGRIVEPKR 183
LKE +++ GE+ +V KR FGF+ Y++ + + ++ ++++G+ +E
Sbjct: 308 LKELFQRHGEVTKIVTPPGKGGKRD--FGFVHYAERSSALKAVKDTERYEVNGQPLEVVL 365
Query: 184 AVPREEIKRPEAS 222
A P+ E K +S
Sbjct: 366 AKPQAERKHDPSS 378
Score = 32.7 bits (71), Expect = 0.25
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = +1
Query: 7 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 132
L++ E+ GEI +V +MKD + SKG+ F+ + + +A
Sbjct: 132 LRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKA 173
Score = 29.5 bits (63), Expect = 2.3
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = +3
Query: 258 QDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF-DDYDPVDRVCLQQNHQIKD 434
++ E L+E F G + + VT G KR FGFV + + + V + +++
Sbjct: 301 ENTSTEQLKELFQRHGEVTKI--VTPPGKGGKRDFGFVHYAERSSALKAVKDTERYEVNG 358
Query: 435 QHLDV 449
Q L+V
Sbjct: 359 QPLEV 363
>At3g63450.1 68416.m07144 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 399
Score = 32.7 bits (71), Expect = 0.25
Identities = 17/36 (47%), Positives = 22/36 (61%)
Frame = +3
Query: 270 EEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 377
EED+ +YFSTFG + V + +KR FGFV F
Sbjct: 169 EEDVSDYFSTFGPVQDVRIPYQ----QKRMFGFVTF 200
>At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 177
Score = 32.7 bits (71), Expect = 0.25
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Frame = +1
Query: 1 SSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRP-HKIDGRIVEP 177
S L + +G+I DV D ++ + FGF+T+ + A +N ++ GR++
Sbjct: 27 SILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTFLEREDASAAMDNMDGAELYGRVLTV 86
Query: 178 KRAVPREEIKRPE 216
A+P E+IK E
Sbjct: 87 NYALP-EKIKGGE 98
Score = 31.1 bits (67), Expect = 0.76
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +3
Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 377
++ E L F FG+I V D+ K R FGFV F
Sbjct: 23 EVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTF 61
>At2g24350.1 68415.m02910 RNA recognition motif (RRM)-containing
protein low similarity to poly(A) binding protein II
from [Xenopus laevis] GI:11527140, [Mus musculus]
GI:2351846, [Bos taurus] GI:1051125; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) domain
Length = 537
Score = 32.3 bits (70), Expect = 0.33
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +1
Query: 16 FYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 132
F + G + +V+V+ DP T+ KG F+T++ V +A
Sbjct: 464 FSSKCGAVQNVIVVTDPVTRHPKGTAFVTFATKESVGKA 502
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 32.3 bits (70), Expect = 0.33
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +3
Query: 291 FSTFGNIVSVSVVTDKETGKKRGFGFVEF 377
FS + V+ D++TG+ RGFGFV F
Sbjct: 159 FSVYPTCSDARVMWDQKTGRSRGFGFVSF 187
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +1
Query: 43 DVVVMKDPKTKRSKGFGFITY 105
D VM D KT RS+GFGF+++
Sbjct: 167 DARVMWDQKTGRSRGFGFVSF 187
>At5g04290.1 68418.m00422 KOW domain-containing transcription factor
family protein
Length = 1493
Score = 31.9 bits (69), Expect = 0.44
Identities = 13/32 (40%), Positives = 14/32 (43%)
Frame = +1
Query: 616 WGNQNPWDDNGGGNWSNQGYGDQGNWGSFGSG 711
WG QN D GG +W QG G W G
Sbjct: 1302 WGKQN--DGGGGSSWGKQGDGGSKPWNEHSGG 1331
Score = 30.7 bits (66), Expect = 1.0
Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Frame = +1
Query: 616 WGNQNPWDDNGGGNWSNQ-GYGDQGNWGSFGSG 711
WG QN D GG +W Q G G +WG G
Sbjct: 1278 WGKQN--DSGGGSSWGKQDGGGGGSSWGKQNDG 1308
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Frame = +1
Query: 616 WGNQNPWDDNGGGNWSNQGYGDQG-NWGSFGSG 711
WG QN D GG +W Q G G +WG G
Sbjct: 1180 WGKQN--DAGGGSSWGKQDSGGDGSSWGKQDGG 1210
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = +1
Query: 616 WGNQNPWDDNGGGNWSNQGYGDQGNWGSFGSG 711
WG +N D GG +W Q G +WG G
Sbjct: 1144 WGKEN--DAGGGSSWGKQDNGVGSSWGKQNDG 1173
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/33 (39%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Frame = +1
Query: 616 WGNQNPWDDNGGGNWSNQG-YGDQGNWGSFGSG 711
WG QN GG +W Q G +WG SG
Sbjct: 1167 WGKQND-GSGGGSSWGKQNDAGGGSSWGKQDSG 1198
>At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 173
Score = 31.9 bits (69), Expect = 0.44
Identities = 16/57 (28%), Positives = 28/57 (49%)
Frame = +3
Query: 303 GNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQHLDVKKAISKTD 473
G ++ + + DKET K +GF F E++ + D + + + +K AIS D
Sbjct: 31 GRVIDLHIPRDKETDKPKGFAFAEYETEEIADYAVKLFSGLVSLYNRTLKFAISGQD 87
Score = 31.1 bits (67), Expect = 0.76
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +1
Query: 25 QWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 132
Q G ++D+ + +D +T + KGF F Y + D A
Sbjct: 29 QAGRVIDLHIPRDKETDKPKGFAFAEYETEEIADYA 64
>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
protein low similarity to glycine-rich RNA-binding
protein [Euphorbia esula] GI:2645699; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 337
Score = 31.5 bits (68), Expect = 0.58
Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Frame = +1
Query: 4 SLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHK-IDGRIV 171
+++ + +G ++ V ++ D ++ R K +GF+T+S D+A + K I GR V
Sbjct: 22 AVRRVFSIYGSVLTVKIVND-RSVRGKCYGFVTFSNRRSADDAIEDMDGKSIGGRAV 77
>At5g09830.1 68418.m01137 BolA-like family protein contains Pfam
profile: PF01722 BolA-like protein
Length = 93
Score = 31.5 bits (68), Expect = 0.58
Identities = 18/47 (38%), Positives = 27/47 (57%)
Frame = +2
Query: 74 RDQKDLDLLHILKPIWLMKLKIIGLTKLTEELSSQSEQFQGKRLKDQ 214
++Q + L LKPI L + I G + E+ SEQF+GKRL ++
Sbjct: 4 KEQVEASLTSKLKPIHLEVIDISGGCGSSFEVEVVSEQFEGKRLLER 50
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 31.5 bits (68), Expect = 0.58
Identities = 20/56 (35%), Positives = 32/56 (57%)
Frame = +3
Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQI 428
D E D+R+ FS I SV + +KETG+ +G+ V+F D V + L+ + Q+
Sbjct: 272 DTTERDIRKLFSDCV-INSVRLGKNKETGEFKGYAHVDFKDSVSV-AIALKLDQQV 325
>At4g32720.1 68417.m04657 RNA recognition motif (RRM)-containing
protein RNA-binding protein LAH1, Saccharomyces
cerevisiae, PIR2:B48600; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 433
Score = 31.1 bits (67), Expect = 0.76
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Frame = +3
Query: 237 VVCSWTKQDIEEEDLREYFSTFGNIVSVSVVTD-KETGKKRGFGFVEFDDYDPVDRVCLQ 413
V S D++ ED+ +FS +G + SV + E+ G VEF + V ++
Sbjct: 118 VAASPFSYDVKREDVESFFSQYGKVNSVRMPRHVAESRIFSGVALVEFPTEEDAQNV-MK 176
Query: 414 QNHQIKDQHLDVK 452
QN Q L++K
Sbjct: 177 QNLVFAGQELELK 189
>At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing
protein heterogeneous nuclear ribonucleoprotein R, Homo
sapiens, PIR:T02673; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 471
Score = 31.1 bits (67), Expect = 0.76
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +1
Query: 7 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 132
LK F GE+ +V +M++ + KG+ F+T+ + EA
Sbjct: 108 LKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEA 149
Score = 27.9 bits (59), Expect = 7.1
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Frame = +3
Query: 258 QDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQ-QNHQIKD 434
+DI +E L+ F G I+ V + K + +GFV + + V R + ++I
Sbjct: 277 RDITQERLKALFEHHGKILKVVIPPAKPGKEDSRYGFVHYAERTSVMRALKNTERYEIDG 336
Query: 435 QHLDVKKAISKTD 473
LD A + D
Sbjct: 337 HMLDCTLAKPQAD 349
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 31.1 bits (67), Expect = 0.76
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Frame = +3
Query: 261 DIEEEDLREYFSTFGNIVS----VSVVTDKETGKKRGFGFVEF 377
++ + L + FS F + S V+ D++TG+ RGFGFV F
Sbjct: 158 EVTDAALFDSFSAFNSCSSYYRDARVMWDQKTGRSRGFGFVSF 200
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +1
Query: 43 DVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 138
D VM D KT RS+GFGF+++ A N
Sbjct: 180 DARVMWDQKTGRSRGFGFVSFRNQQDAQTAIN 211
>At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing
protein KIAA0332 - Homo sapiens, EMBL:AB002330
Length = 946
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Frame = +3
Query: 264 IEEEDLREYFSTFGNIVSVSVV---TDKETGKKRGFGFVEF 377
++E L F FG I SV ++ TD+E ++R GFV F
Sbjct: 190 VDENFLLRTFGRFGPIASVKIMWPRTDEEKRRQRNCGFVSF 230
>At2g30260.1 68415.m03684 small nuclear ribonucleoprotein U2B,
putative / spliceosomal protein, putative similar to
spliceosomal protein [Solanum tuberosum] GI:169589
Length = 232
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Frame = +1
Query: 4 SLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQ----AHMVDEAQN 138
SL + Q+G I+DVV +K PK +G ++T+S+ H V + QN
Sbjct: 29 SLYCLFSQFGRILDVVALKTPKL---RGQAWVTFSEVTAAGHAVRQMQN 74
>At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing
protein low similarity to enhancer binding protein-1;
EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28
kDa ribonucleoprotein, chloroplast precursor (28RNP)
{Nicotiana sylvestris}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 304
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +3
Query: 279 LREYFST-FGNIVSVSVVTDKETGKKRGFGFVEF 377
L+E+F GN+VS V+ + + G+GFV F
Sbjct: 205 LKEFFDADTGNVVSTEVIFHENPRRSSGYGFVSF 238
>At1g75550.1 68414.m08780 glycine-rich protein
Length = 167
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/35 (40%), Positives = 14/35 (40%)
Frame = +1
Query: 607 RWHWGNQNPWDDNGGGNWSNQGYGDQGNWGSFGSG 711
RW WG GGG G G G WG G G
Sbjct: 66 RWGWGGGGGGGGGGGGGGGGGG-GGGGGWGWGGGG 99
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +1
Query: 637 DDNGGGNWSNQGYGDQG-NWGSFGSGY 714
+D GG +N GYG +G +G GSGY
Sbjct: 53 NDRGGYGGANSGYGGRGQGYGGRGSGY 79
>At3g21100.1 68416.m02667 RNA recognition motif (RRM)-containing
protein contains Pfam profile:PF00076 RNA recognition
motif
Length = 602
Score = 29.5 bits (63), Expect = 2.3
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +3
Query: 270 EEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN-HQIKDQHLD 446
+ED+ YF FG + V + +KR FGFV F + V + + N H I D +
Sbjct: 332 DEDVSNYFGNFGPVQDVRIPYQ----QKRMFGFVTFLHSETVRIILARGNPHFICDSRVL 387
Query: 447 VK 452
VK
Sbjct: 388 VK 389
>At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain), PF02136: Nuclear
transport factor 2 (NTF2) domain
Length = 1294
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/62 (24%), Positives = 35/62 (56%)
Frame = +3
Query: 279 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQHLDVKKA 458
+ + FG I ++S++ ++G F FV+F+ D +R + +I +++++V+K
Sbjct: 761 IEDALKKFGPINAISII---KSGPLYKFAFVDFEKADVANRAIMASPVRICEKNVNVQKK 817
Query: 459 IS 464
+S
Sbjct: 818 LS 819
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +3
Query: 276 DLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 377
D++ FS G + V + + ETG +GF FV+F
Sbjct: 346 DIKVVFSAVGFVWDVFIPKNFETGLPKGFAFVKF 379
>At1g65440.1 68414.m07424 glycine-rich protein
Length = 1647
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 12/44 (27%)
Frame = +1
Query: 616 WGNQNP------WDDNGGGNWSNQ------GYGDQGNWGSFGSG 711
WGN + W ++GGG W ++ G G G WGS G
Sbjct: 1511 WGNNDTGTADGGWGNSGGGGWGSESAGKKTGGGSTGGWGSESGG 1554
>At5g13655.1 68418.m01588 hypothetical protein
Length = 395
Score = 29.1 bits (62), Expect = 3.1
Identities = 12/51 (23%), Positives = 28/51 (54%)
Frame = +1
Query: 7 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKID 159
L ++ ++W +I+ ++ KD T +S G++ + H + +++R H D
Sbjct: 301 LDKYSDRWQDIILMLTRKDFDTTKSFILGYVLQNSIHSIWRERDDRRHGED 351
>At4g35785.2 68417.m05083 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 141
Score = 29.1 bits (62), Expect = 3.1
Identities = 10/34 (29%), Positives = 22/34 (64%)
Frame = +1
Query: 7 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYS 108
L+ + + G++ ++ +P+T+ S+GF F+T S
Sbjct: 88 LEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMS 121
>At4g35785.1 68417.m05082 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 140
Score = 29.1 bits (62), Expect = 3.1
Identities = 10/34 (29%), Positives = 22/34 (64%)
Frame = +1
Query: 7 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYS 108
L+ + + G++ ++ +P+T+ S+GF F+T S
Sbjct: 87 LEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMS 120
>At1g72800.1 68414.m08416 nuM1-related contains similarity with nuM1
GI:1279563 from [Medicago sativa]
Length = 335
Score = 29.1 bits (62), Expect = 3.1
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +3
Query: 279 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 383
L +YFS+FG I V V TG G+ +++ +
Sbjct: 254 LSKYFSSFGEITRVFVPPSHGTGGSLGYAYIDLKE 288
>At1g41855.1 68414.m04833 hypothetical protein
Length = 261
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +1
Query: 64 PKTKRSKGFGFITYSQAHMVDEAQNNRPH-KIDGRIVEPKRAVP 192
P+ K KGFG + + + +E++N +PH + GR+ + P
Sbjct: 13 PELKNVKGFGDLELLASKLEEESRNQKPHTRPPGRVHPAPHSTP 56
>At4g38440.1 68417.m05432 expressed protein
Length = 1465
Score = 28.7 bits (61), Expect = 4.1
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = +3
Query: 246 SWTKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKK 353
+WT++ DLR FS GN+V VV+ ETG K
Sbjct: 308 AWTERVEAARDLR--FSFDGNVVEEDVVSPAETGGK 341
>At1g60200.1 68414.m06781 splicing factor PWI domain-containing
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF01480: PWI domain, PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 899
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1
Query: 31 GEIVDVVVMKDPKTKRSKGFGFITYSQA 114
G + + +DP TK+ KGFGF + A
Sbjct: 227 GHVKSCLRAEDPTTKKPKGFGFYEFESA 254
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = +3
Query: 264 IEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDR 401
+E + + G++ S D T K +GFGF EF+ + + R
Sbjct: 214 VENDFMMSILEFCGHVKSCLRAEDPTTKKPKGFGFYEFESAEGILR 259
>At5g64370.1 68418.m08086 beta-ureidopropionase, putative /
beta-alanine synthase, putative similar to beta-alanine
synthase [Dictyostelium discoideum] GI:14334061;
contains Pfam profile PF00795: hydrolase,
carbon-nitrogen family
Length = 408
Score = 28.3 bits (60), Expect = 5.4
Identities = 16/46 (34%), Positives = 20/46 (43%)
Frame = -2
Query: 694 PNYPGLHSPD*TSFRHHYRPKDFDSPSATLTVSLPLVKTTILISPL 557
P G P F H Y F +P A+ T SL K +LIS +
Sbjct: 313 PFTSGDGKPQHNDFGHFYGSSHFSAPDASCTPSLSRYKDGLLISDM 358
>At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing
protein
Length = 710
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +3
Query: 270 EEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPV 395
+ +L +G + V +K +GK +G+ VEF YDPV
Sbjct: 247 DAELEAELCKYGAVKEVKFFDEKASGKSKGYCQVEF--YDPV 286
>At2g15770.1 68415.m01808 glycine-rich protein contains a domain
related to blue copper-binding protein; similar to
Stellacyanin (SP:P00302) {Rhus vernicifera}
Length = 301
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +1
Query: 604 SRWHWGNQNPWDDNGGGNWSNQGYGDQGNWGS 699
S W WG+ D++G G SN G WG+
Sbjct: 59 SSWSWGSD---DNSGSGLGSNSNNGSGWGWGT 87
>At5g66400.1 68418.m08374 dehydrin (RAB18) nearly identical to
SP|P30185 Dehydrin Rab18 {Arabidopsis thaliana}
Length = 186
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/24 (54%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Frame = +1
Query: 646 GGGNWSNQGYGDQG-NWGSFGSGY 714
GGG QGYG G +GS G GY
Sbjct: 41 GGGATGGQGYGTGGQGYGSGGQGY 64
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Frame = +1
Query: 616 WGNQNPWDDNGGGNWSNQGYGDQG--NWGSFG-SGY 714
WG + G G + + GYG +G +GS G SGY
Sbjct: 620 WGTPSSGGGGGRGGYGDSGYGGRGESGYGSRGDSGY 655
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,163,941
Number of Sequences: 28952
Number of extensions: 272353
Number of successful extensions: 1538
Number of sequences better than 10.0: 198
Number of HSP's better than 10.0 without gapping: 1081
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1496
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -