Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0031.Seq
(734 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 140 1e-34
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 133 3e-32
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc... 118 1e-27
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 116 3e-27
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 99 3e-22
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch... 55 9e-09
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom... 46 6e-06
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe... 31 0.17
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 31 0.23
SPAC25B8.04c |||mitochondrial splicing suppressor |Schizosacchar... 29 0.91
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 26 6.4
SPAC2F3.04c |rim1||mitochondrial single-stranded DNA binding pro... 26 6.4
SPCC306.05c |ins1||INSIG domain protein|Schizosaccharomyces pomb... 25 8.5
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 25 8.5
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar... 25 8.5
SPAC823.11 |||sphingosine-1-phosphate phosphatase |Schizosacchar... 25 8.5
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 140 bits (340), Expect = 1e-34
Identities = 65/97 (67%), Positives = 77/97 (79%)
Frame = +3
Query: 240 PQQHNFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSM 419
P FDAKRLIGRKF+D VQ+DMKHWPF+V+S GKP ++V YKGE KTF PEE+SSM
Sbjct: 61 PHNTIFDAKRLIGRKFDDPEVQSDMKHWPFKVISKDGKPVLQVEYKGETKTFTPEEISSM 120
Query: 420 VLTKMKETAEAYLGKTVQNAVITVPAYFNDLKDKPQK 530
VL KM+ETAEAYLG V +AV+TVPAYFND + + K
Sbjct: 121 VLMKMRETAEAYLGGKVTDAVVTVPAYFNDSQRQATK 157
Score = 121 bits (291), Expect = 1e-28
Identities = 58/67 (86%), Positives = 62/67 (92%)
Frame = +2
Query: 509 SQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIFDLGGGTFDVSILTI 688
SQRQATKDAG I+GLNVLRIINEPTAAAIAYGLD+ GE NVLIFDLGGGTFDVS+LTI
Sbjct: 151 SQRQATKDAGLIAGLNVLRIINEPTAAAIAYGLDRSNQGESNVLIFDLGGGTFDVSLLTI 210
Query: 689 EDGIFEV 709
E+GIFEV
Sbjct: 211 EEGIFEV 217
Score = 118 bits (285), Expect = 7e-28
Identities = 54/62 (87%), Positives = 59/62 (95%)
Frame = +1
Query: 70 AVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNN 249
++GIDLGTTYSCVG F + +VEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP+N
Sbjct: 4 SIGIDLGTTYSCVGHFSNNRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPHN 63
Query: 250 TI 255
TI
Sbjct: 64 TI 65
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 133 bits (321), Expect = 3e-32
Identities = 61/97 (62%), Positives = 75/97 (77%)
Frame = +3
Query: 240 PQQHNFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSM 419
P FDAKRLIGR+F D VQ+DMKHWPF+V+ GKP I+V +KGE KTF PEE+SSM
Sbjct: 61 PHNTIFDAKRLIGRRFNDPEVQSDMKHWPFKVIEKDGKPLIQVEFKGETKTFTPEEISSM 120
Query: 420 VLTKMKETAEAYLGKTVQNAVITVPAYFNDLKDKPQK 530
VL KM+E+AEA+LG V +AV+TVPAYFND + + K
Sbjct: 121 VLLKMRESAEAFLGGKVTDAVVTVPAYFNDSQRQATK 157
Score = 118 bits (285), Expect = 7e-28
Identities = 54/62 (87%), Positives = 59/62 (95%)
Frame = +1
Query: 70 AVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNN 249
++GIDLGTTYSCVG F + +VEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP+N
Sbjct: 4 SIGIDLGTTYSCVGHFSNNRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPHN 63
Query: 250 TI 255
TI
Sbjct: 64 TI 65
Score = 118 bits (283), Expect = 1e-27
Identities = 57/67 (85%), Positives = 61/67 (91%)
Frame = +2
Query: 509 SQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIFDLGGGTFDVSILTI 688
SQRQATKDAG I+GLNVLRIINEPTAAAIAYGLD+ E NVLIFDLGGGTFDVS+LTI
Sbjct: 151 SQRQATKDAGLIAGLNVLRIINEPTAAAIAYGLDRSNQHETNVLIFDLGGGTFDVSLLTI 210
Query: 689 EDGIFEV 709
E+GIFEV
Sbjct: 211 EEGIFEV 217
>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 118 bits (283), Expect = 1e-27
Identities = 54/90 (60%), Positives = 68/90 (75%)
Frame = +3
Query: 240 PQQHNFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSM 419
P+ FDAKRLIGR++ED Q D+KHWPF+V+ + G P I+V Y GE K F +E+S+M
Sbjct: 65 PRNTVFDAKRLIGRRYEDPETQKDIKHWPFKVIDNNGIPTIEVNYLGEKKQFTAQEISAM 124
Query: 420 VLTKMKETAEAYLGKTVQNAVITVPAYFND 509
VLTKMKE +EA L K V+ AVITVPAYF+D
Sbjct: 125 VLTKMKEISEAKLNKRVEKAVITVPAYFSD 154
Score = 110 bits (264), Expect = 2e-25
Identities = 53/67 (79%), Positives = 58/67 (86%)
Frame = +2
Query: 509 SQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIFDLGGGTFDVSILTI 688
SQR ATKDAG I+GLNVLRIINEPTAAAIAYGLD K +NVLIFDLGGGTFDVS+L I
Sbjct: 155 SQRAATKDAGAIAGLNVLRIINEPTAAAIAYGLDAKSDKPKNVLIFDLGGGTFDVSLLKI 214
Query: 689 EDGIFEV 709
+ G+FEV
Sbjct: 215 QGGVFEV 221
Score = 105 bits (253), Expect = 5e-24
Identities = 47/62 (75%), Positives = 54/62 (87%)
Frame = +1
Query: 70 AVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNN 249
A+GIDLGTTYSCV V++ VEII NDQG RTTPS+VAFT+TERL+GDAAKNQ AMNP N
Sbjct: 8 AIGIDLGTTYSCVAVWETANVEIIPNDQGARTTPSFVAFTETERLVGDAAKNQAAMNPRN 67
Query: 250 TI 255
T+
Sbjct: 68 TV 69
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 116 bits (279), Expect = 3e-27
Identities = 52/97 (53%), Positives = 73/97 (75%)
Frame = +3
Query: 240 PQQHNFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSM 419
P+ FD KRLIGRKF++ T+ D+K +PF +V+D +P ++V G+ K F PEE+S+M
Sbjct: 94 PENTIFDIKRLIGRKFDEKTMAKDIKSFPFHIVNDKNRPLVEVNVGGKKKKFTPEEISAM 153
Query: 420 VLTKMKETAEAYLGKTVQNAVITVPAYFNDLKDKPQK 530
+L+KMK+TAEAYLGK V +AV+TVPAYFND + + K
Sbjct: 154 ILSKMKQTAEAYLGKPVTHAVVTVPAYFNDAQRQATK 190
Score = 109 bits (262), Expect = 4e-25
Identities = 49/67 (73%), Positives = 64/67 (95%)
Frame = +2
Query: 509 SQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIFDLGGGTFDVSILTI 688
+QRQATKDAGTI+GLNV+RI+NEPTAAAIAYGLDK T E++++++DLGGGTFDVS+L+I
Sbjct: 184 AQRQATKDAGTIAGLNVIRIVNEPTAAAIAYGLDKTDT-EKHIVVYDLGGGTFDVSLLSI 242
Query: 689 EDGIFEV 709
++G+FEV
Sbjct: 243 DNGVFEV 249
Score = 104 bits (249), Expect = 2e-23
Identities = 46/61 (75%), Positives = 53/61 (86%)
Frame = +1
Query: 73 VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNT 252
+GIDLGTTYSCV V ++G+VEIIANDQGNR TPSYVAFT+ ERL+G+AAKNQ NP NT
Sbjct: 38 IGIDLGTTYSCVAVMKNGRVEIIANDQGNRITPSYVAFTEDERLVGEAAKNQAPSNPENT 97
Query: 253 I 255
I
Sbjct: 98 I 98
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 99 bits (238), Expect = 3e-22
Identities = 47/67 (70%), Positives = 57/67 (85%)
Frame = +2
Query: 509 SQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIFDLGGGTFDVSILTI 688
SQRQATK AG I+GLNVLR++NEPTAAA+AYGLDKK + V +FDLGGGTFD+SIL +
Sbjct: 197 SQRQATKAAGAIAGLNVLRVVNEPTAAALAYGLDKK--NDAIVAVFDLGGGTFDISILEL 254
Query: 689 EDGIFEV 709
+G+FEV
Sbjct: 255 NNGVFEV 261
Score = 86.2 bits (204), Expect = 4e-18
Identities = 41/97 (42%), Positives = 60/97 (61%)
Frame = +3
Query: 240 PQQHNFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSM 419
P+ F KRLIGR+F++ VQ D+K P+++V + KT+ P ++
Sbjct: 110 PENTFFATKRLIGRRFKEPEVQRDIKEVPYKIVEHSNGD---AWLEARGKTYSPSQIGGF 166
Query: 420 VLTKMKETAEAYLGKTVQNAVITVPAYFNDLKDKPQK 530
+L+KM+ETA YLGK V+NAV+TVPAYFND + + K
Sbjct: 167 ILSKMRETASTYLGKDVKNAVVTVPAYFNDSQRQATK 203
Score = 77.4 bits (182), Expect = 2e-15
Identities = 36/65 (55%), Positives = 46/65 (70%), Gaps = 1/65 (1%)
Frame = +1
Query: 61 KAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAM 237
K P +GIDLGTT SC+ + + ++IAN +G RTTPS VAFT D ERL+G +AK Q +
Sbjct: 49 KGPVIGIDLGTTTSCLAIMEGQTPKVIANAEGTRTTPSVVAFTKDGERLVGVSAKRQAVI 108
Query: 238 NPNNT 252
NP NT
Sbjct: 109 NPENT 113
>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
Pss1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 55.2 bits (127), Expect = 9e-09
Identities = 23/66 (34%), Positives = 42/66 (63%)
Frame = +1
Query: 58 AKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAM 237
++ VGID G + + + V ++ +++I N+ NR+TPS V++ + R +G+AAK+ A
Sbjct: 3 SRTNVVGIDFGNSKTVIAVARNRAIDVIVNEVSNRSTPSLVSYGERSRFLGEAAKSAEAS 62
Query: 238 NPNNTI 255
N NT+
Sbjct: 63 NFRNTV 68
Score = 51.2 bits (117), Expect = 1e-07
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Frame = +2
Query: 512 QRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGE----RNVLIFDLGGGTFDVSI 679
QR+A +A I+GLN LR++N+ AAA+ YG+ K E R V I D G + VSI
Sbjct: 156 QRRALLEAANIAGLNPLRLMNDNAAAALTYGITKTDLPEPESPRRVAIVDFGHSNYSVSI 215
Query: 680 LTIEDGIFEV 709
+ G F +
Sbjct: 216 VEFSRGQFHI 225
Score = 44.8 bits (101), Expect = 1e-05
Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Frame = +3
Query: 264 KRLIGRKFEDATVQ-ADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSMVLTKMKE 440
KRL GR ++D ++ + ++ G KV Y E+ F ++ + TK+K
Sbjct: 72 KRLAGRTYDDPEIKDIESNFISAKLTEVDGFVGAKVQYLNEETAFSNIQLIAAYFTKIKA 131
Query: 441 TAEAYLGKTVQNAVITVPAYFNDLK 515
AEA L +V + VI++PA+F D++
Sbjct: 132 IAEAELIGSVSDVVISIPAWFTDIQ 156
>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 566
Score = 46.0 bits (104), Expect = 6e-06
Identities = 18/62 (29%), Positives = 36/62 (58%)
Frame = +1
Query: 73 VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNT 252
+GI G S + + GK +++AN++GNR PS +++ + G A+ Q+ N +N+
Sbjct: 27 IGISFGNQNSSIAFNRDGKTDVLANEEGNRQIPSILSYHGDQEYHGVQARGQLVRNADNS 86
Query: 253 IS 258
++
Sbjct: 87 VT 88
Score = 36.3 bits (80), Expect = 0.005
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = +3
Query: 381 EDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDLKDK 521
++K E S L ++ E+AE +LG V V++VP YF D + K
Sbjct: 134 KEKILTAHEASVRHLRRLTESAEDFLGTKVNGCVMSVPVYFTDAQRK 180
>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 848
Score = 31.1 bits (67), Expect = 0.17
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = +1
Query: 73 VGIDLGTTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNN 249
+ ID GT ++ + + G +EI+ R S VAF ER+ G A N P +
Sbjct: 25 LAIDYGTEWTKAALIKPGIPLEIVLTKDTRRKEQSAVAFKGNERIFGVDASNLATRFPAH 84
Query: 250 TI 255
+I
Sbjct: 85 SI 86
Score = 29.5 bits (63), Expect = 0.52
Identities = 12/45 (26%), Positives = 26/45 (57%)
Frame = +3
Query: 381 EDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDLK 515
+++ + EE+ +M + AE + + + V+TVP +FN+L+
Sbjct: 131 DEENYSLEEIIAMTMEHYISLAEEMAHEKITDLVLTVPPHFNELQ 175
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 30.7 bits (66), Expect = 0.23
Identities = 33/154 (21%), Positives = 65/154 (42%), Gaps = 11/154 (7%)
Frame = -2
Query: 661 TAAEVKDKYISFSSTLFVKTVSNRSSSGFIDDSENVQA*DGTCIFCGLSLRSLKYAGTVI 482
+++ + + S SS L T S S+S I S + F S S + I
Sbjct: 565 SSSSIPSTFSSVSSILSSSTSSPSSTSLSISSSST------SSTFSSASTSSPSSISSSI 618
Query: 481 TAFCTVLPR*ASAVSFIFVSTMELTSSGKKVLSSPL-----------YATLILGLPPSLT 335
++ T+L + S + +S+ + S +LSS + Y++ ++ +L
Sbjct: 619 SSSSTILSSPTPSTSSLMISSSSIISGSSSILSSSISTIPISSSLSTYSSSVIPSSSTLV 678
Query: 334 TSKGQCFMSACTVASSNLRPMRRLASKLCCWGSS 233
+S +S+ VASS+ P+ +S + + +S
Sbjct: 679 SSSSSLIVSSSPVASSSSSPIPSSSSLVSTYSAS 712
>SPAC25B8.04c |||mitochondrial splicing suppressor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 378
Score = 28.7 bits (61), Expect = 0.91
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 65 HPQ*ESIWVPRTLALVSSSTGRWRSSPTTRAT 160
HP S W+P LVS+ W +SP+++ T
Sbjct: 283 HPLYSSSWIPTLHDLVSTRCSVWLTSPSSQRT 314
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 25.8 bits (54), Expect = 6.4
Identities = 23/111 (20%), Positives = 49/111 (44%)
Frame = -2
Query: 661 TAAEVKDKYISFSSTLFVKTVSNRSSSGFIDDSENVQA*DGTCIFCGLSLRSLKYAGTVI 482
T++ V + +S+ V T + +SS ++ S + + ++ S+ + T I
Sbjct: 1549 TSSSVLNSSTPITSSTVVNTSTPITSSSVVNSSTPITSSTALNTSTPITSSSVLNSSTPI 1608
Query: 481 TAFCTVLPR*ASAVSFIFVSTMELTSSGKKVLSSPLYATLILGLPPSLTTS 329
T+ + S + S+ +TSS S+P+ ++ L P +T+S
Sbjct: 1609 TSSTALNTSTPITSSSVLNSSTPITSSTVLNSSTPITSSTALNTSPPITSS 1659
>SPAC2F3.04c |rim1||mitochondrial single-stranded DNA binding
protein Rim1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 25.8 bits (54), Expect = 6.4
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = +3
Query: 249 HNFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFP 401
+NFD + I RK V+AD ++G + K+ + + D F+P
Sbjct: 75 YNFDRLQTILRKGTRVYVEADAVWRSVPAGNEGSQAKMSLRHVSADVLFYP 125
>SPCC306.05c |ins1||INSIG domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 281
Score = 25.4 bits (53), Expect = 8.5
Identities = 24/73 (32%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Frame = -1
Query: 392 GFVFTLICYLDLRFASITDNLERPVLHVGLHSSIFELTSDETFGIEIVLLGFI-----AT 228
GFVFT + I + + P+L V L S FE FG V+LG
Sbjct: 104 GFVFTYLA------EQIVQDAKLPLLTVNLKSWKFEPPWPAIFGFVAVILGLSYRRMDTK 157
Query: 227 WFLAASPMRRSVS 189
+ L A+P+R S S
Sbjct: 158 YPLGAAPLRPSQS 170
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 25.4 bits (53), Expect = 8.5
Identities = 16/59 (27%), Positives = 23/59 (38%)
Frame = +3
Query: 249 HNFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSMVL 425
H F L G K E T K WP+ ++ ++G +TF EV +L
Sbjct: 1263 HRFYEYLLSGNKDEALTYALQQKQWPYAIIV--AHSIDAKTFQGVVRTFCKSEVKESML 1319
>SPAC2F7.03c |pom1||DYRK family protein kinase
Pom1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1087
Score = 25.4 bits (53), Expect = 8.5
Identities = 17/66 (25%), Positives = 31/66 (46%)
Frame = +3
Query: 51 QNGKSTRSRNRSGYHVLLRWCLPAREGGDHRQRPGQQDHSVLCCVHRHRASHRRCRQEPG 230
+NGK T +R +S + W P++E R G D + V R + + +EP
Sbjct: 477 RNGKKTPTRTKSRMQQFINWFKPSKE----RSSNGNSDSASPPPVPRLSITRSQVSREP- 531
Query: 231 GDEPQQ 248
++P++
Sbjct: 532 -EKPEE 536
>SPAC823.11 |||sphingosine-1-phosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 25.4 bits (53), Expect = 8.5
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -2
Query: 151 GRWR*SPPSRAGRHQRKSTWYPDRFLLRVLLPFCI 47
G W SP S + H ++++ +F +RVL C+
Sbjct: 276 GTWFASPESLSHLHDNLNSYFLLKFFVRVLFGVCM 310
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,233,461
Number of Sequences: 5004
Number of extensions: 69610
Number of successful extensions: 284
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 279
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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