Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0031.Seq
(734 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8490| Best HMM Match : HSP70 (HMM E-Value=0) 142 3e-34
SB_45540| Best HMM Match : HSP70 (HMM E-Value=0) 139 2e-33
SB_56180| Best HMM Match : No HMM Matches (HMM E-Value=.) 136 2e-32
SB_45647| Best HMM Match : HSP70 (HMM E-Value=0) 121 7e-28
SB_51590| Best HMM Match : HSP70 (HMM E-Value=4.4e-36) 83 3e-16
SB_15336| Best HMM Match : No HMM Matches (HMM E-Value=.) 73 2e-13
SB_57217| Best HMM Match : Helicase_C (HMM E-Value=0.049) 61 1e-09
SB_38725| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 3e-04
SB_47391| Best HMM Match : HSP70 (HMM E-Value=2.7e-07) 42 5e-04
SB_31398| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_56988| Best HMM Match : DUF229 (HMM E-Value=2e-06) 32 0.42
SB_4173| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.42
SB_37014| Best HMM Match : HSP70 (HMM E-Value=5.9e-16) 31 0.97
SB_57953| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_41920| Best HMM Match : Filamin (HMM E-Value=0.00015) 30 1.7
SB_27085| Best HMM Match : Filamin (HMM E-Value=1.5) 30 2.2
SB_7560| Best HMM Match : Metallothio_PEC (HMM E-Value=1.3) 29 3.0
SB_2538| Best HMM Match : YTV (HMM E-Value=0.0015) 29 3.9
SB_30415| Best HMM Match : M (HMM E-Value=6.5e-05) 28 6.8
SB_24848| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_41041| Best HMM Match : PDZ (HMM E-Value=1.3e-40) 28 9.0
>SB_8490| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 640
Score = 142 bits (343), Expect = 3e-34
Identities = 66/97 (68%), Positives = 80/97 (82%)
Frame = +3
Query: 240 PQQHNFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSM 419
P+ FDAKRLIGR+++DATVQ+DMK WPF+++SD KPKI+V YKGE KTF EE+SSM
Sbjct: 63 PENTIFDAKRLIGRRYDDATVQSDMKLWPFKIISDNNKPKIQVEYKGERKTFAAEEISSM 122
Query: 420 VLTKMKETAEAYLGKTVQNAVITVPAYFNDLKDKPQK 530
VL KMKETAEAYLG+ V +AVITVPAYFND + + K
Sbjct: 123 VLGKMKETAEAYLGQKVTSAVITVPAYFNDSQRQATK 159
Score = 133 bits (321), Expect = 2e-31
Identities = 60/67 (89%), Positives = 64/67 (95%)
Frame = +1
Query: 55 MAKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA 234
M KAPA+GIDLGTTYSCVGVFQ+GKVEIIANDQGNRTTPSYV FTDTERL+GDAAKNQVA
Sbjct: 1 MGKAPAIGIDLGTTYSCVGVFQNGKVEIIANDQGNRTTPSYVGFTDTERLVGDAAKNQVA 60
Query: 235 MNPNNTI 255
+NP NTI
Sbjct: 61 LNPENTI 67
Score = 120 bits (288), Expect = 2e-27
Identities = 58/68 (85%), Positives = 65/68 (95%), Gaps = 1/68 (1%)
Frame = +2
Query: 509 SQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIFDLGGGTFDVSILTI 688
SQRQATKDAGTI+GLNVLR+INEPTAAA+AYGLDK +GE+NVLIFDLGGGTFDVSILTI
Sbjct: 153 SQRQATKDAGTIAGLNVLRVINEPTAAALAYGLDKSLSGEKNVLIFDLGGGTFDVSILTI 212
Query: 689 EDG-IFEV 709
+DG +FEV
Sbjct: 213 DDGSLFEV 220
>SB_45540| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 1097
Score = 139 bits (336), Expect = 2e-33
Identities = 63/97 (64%), Positives = 77/97 (79%)
Frame = +3
Query: 240 PQQHNFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSM 419
P+ FDAKRLIGRKF+D V DM HWPF V+ +G +PKI+V +KGE K+FFPEE+SSM
Sbjct: 63 PENTVFDAKRLIGRKFDDPVVARDMTHWPFHVIREGERPKIQVEFKGEKKSFFPEEISSM 122
Query: 420 VLTKMKETAEAYLGKTVQNAVITVPAYFNDLKDKPQK 530
VLTKMKETAEAYLG V +AV+TVPAYF+D + + K
Sbjct: 123 VLTKMKETAEAYLGAKVTDAVVTVPAYFHDSQRQATK 159
Score = 137 bits (332), Expect = 8e-33
Identities = 63/67 (94%), Positives = 65/67 (97%)
Frame = +1
Query: 55 MAKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA 234
MAK PAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAF+DTERLIGDAAKNQVA
Sbjct: 1 MAKTPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFSDTERLIGDAAKNQVA 60
Query: 235 MNPNNTI 255
MNP NT+
Sbjct: 61 MNPENTV 67
Score = 124 bits (300), Expect = 6e-29
Identities = 61/67 (91%), Positives = 64/67 (95%)
Frame = +2
Query: 509 SQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIFDLGGGTFDVSILTI 688
SQRQATKDAGTI+GLNVLRIINEPTAAAIAYGLDKK ERNVLI+DLGGGTFDVS+LTI
Sbjct: 153 SQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKVGVERNVLIYDLGGGTFDVSVLTI 212
Query: 689 EDGIFEV 709
EDGIFEV
Sbjct: 213 EDGIFEV 219
>SB_56180| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 746
Score = 136 bits (329), Expect = 2e-32
Identities = 62/67 (92%), Positives = 64/67 (95%)
Frame = +1
Query: 55 MAKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA 234
M KAPA+GIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTD ERL+GDAAKNQVA
Sbjct: 1 MTKAPAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDEERLVGDAAKNQVA 60
Query: 235 MNPNNTI 255
MNP NTI
Sbjct: 61 MNPTNTI 67
Score = 124 bits (298), Expect = 1e-28
Identities = 61/67 (91%), Positives = 63/67 (94%)
Frame = +2
Query: 509 SQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIFDLGGGTFDVSILTI 688
SQRQATKDAG ISGLNVLRIINEPTAAAIAYGLDKK ERNVLIFDLGGGTFDVS+L+I
Sbjct: 246 SQRQATKDAGVISGLNVLRIINEPTAAAIAYGLDKKVGQERNVLIFDLGGGTFDVSVLSI 305
Query: 689 EDGIFEV 709
EDGIFEV
Sbjct: 306 EDGIFEV 312
Score = 116 bits (280), Expect = 2e-26
Identities = 66/122 (54%), Positives = 77/122 (63%), Gaps = 25/122 (20%)
Frame = +3
Query: 240 PQQHNFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEV--- 410
P FDAKRLIGR+F+D V+ DMKHW FEVV++ G+PK+KV YKGE KTFF EEV
Sbjct: 63 PTNTIFDAKRLIGRRFDDPGVKDDMKHWSFEVVNEAGRPKVKVEYKGETKTFFAEEVVNE 122
Query: 411 ----------------------SSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDLKDKP 524
SSMVL KMKETAEAYLG V +AV+TVPAYFND + +
Sbjct: 123 AGRPKVKVEYKGETKTFFAEEISSMVLNKMKETAEAYLGCKVTDAVVTVPAYFNDSQRQA 182
Query: 525 QK 530
K
Sbjct: 183 TK 184
Score = 59.7 bits (138), Expect = 2e-09
Identities = 28/42 (66%), Positives = 34/42 (80%)
Frame = +3
Query: 405 EVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDLKDKPQK 530
++SSMVL KMKETAEAYLG V +AV+TVPAYFND + + K
Sbjct: 211 QISSMVLNKMKETAEAYLGCKVTDAVVTVPAYFNDSQRQATK 252
>SB_45647| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 1327
Score = 121 bits (291), Expect = 7e-28
Identities = 58/97 (59%), Positives = 73/97 (75%)
Frame = +3
Query: 240 PQQHNFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSM 419
P+ FDAKRLIGR ++D +VQ D+K +PF+VV KP ++V K E KTF EE+S+M
Sbjct: 761 PENTVFDAKRLIGRSWDDTSVQNDLKFFPFKVVDKNKKPHVQVKVKDEIKTFAAEEISAM 820
Query: 420 VLTKMKETAEAYLGKTVQNAVITVPAYFNDLKDKPQK 530
VLTKMKETAEAYLGK V +AV+TVPAYFND + + K
Sbjct: 821 VLTKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATK 857
Score = 113 bits (272), Expect = 1e-25
Identities = 52/67 (77%), Positives = 63/67 (94%)
Frame = +2
Query: 509 SQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIFDLGGGTFDVSILTI 688
+QRQATKDAG I+GL V+RIINEPTAAAIAYG+DKK GE+N+L+FDLGGGTFDVS+LTI
Sbjct: 851 AQRQATKDAGAIAGLTVMRIINEPTAAAIAYGMDKK-EGEKNILVFDLGGGTFDVSLLTI 909
Query: 689 EDGIFEV 709
++G+FEV
Sbjct: 910 DNGVFEV 916
Score = 105 bits (252), Expect = 4e-23
Identities = 48/62 (77%), Positives = 55/62 (88%), Gaps = 1/62 (1%)
Frame = +1
Query: 73 VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVAMNPNN 249
+GIDLGTTYSCVGVF++G+VEIIANDQGNR TPSYVAFT+ ERLIGD AKNQ+ NP N
Sbjct: 704 IGIDLGTTYSCVGVFKNGRVEIIANDQGNRITPSYVAFTEEGERLIGDGAKNQLTTNPEN 763
Query: 250 TI 255
T+
Sbjct: 764 TV 765
>SB_51590| Best HMM Match : HSP70 (HMM E-Value=4.4e-36)
Length = 437
Score = 82.6 bits (195), Expect = 3e-16
Identities = 39/64 (60%), Positives = 50/64 (78%)
Frame = +2
Query: 512 QRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIFDLGGGTFDVSILTIE 691
QR AT A +++G+ VLR+INEPTAAA+AYGL KK G NV++ DLGGGT DVS+L I+
Sbjct: 184 QRNATVKAASLAGITVLRVINEPTAAALAYGLHKK-EGVANVMVVDLGGGTLDVSLLNIQ 242
Query: 692 DGIF 703
G+F
Sbjct: 243 GGMF 246
Score = 71.3 bits (167), Expect = 7e-13
Identities = 32/67 (47%), Positives = 46/67 (68%), Gaps = 2/67 (2%)
Frame = +1
Query: 61 KAPAVGIDLGTTYSCVGVFQ--HGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA 234
K +GIDLGTTYSCVG +Q G+++I +++ ++ PS VAFTD L+G+ A +Q
Sbjct: 30 KPKIIGIDLGTTYSCVGAYQAISGRIDIFSDENDDKVVPSLVAFTDKGVLVGEKALSQAE 89
Query: 235 MNPNNTI 255
+NP NTI
Sbjct: 90 INPKNTI 96
Score = 55.6 bits (128), Expect = 4e-08
Identities = 36/105 (34%), Positives = 52/105 (49%), Gaps = 1/105 (0%)
Frame = +3
Query: 240 PQQHNFDAKRLIGRKFEDATVQADMKHWPFEVVSDG-GKPKIKVAYKGEDKTFFPEEVSS 416
P+ +DAKR IG+ F + K + F V +D G V KG PEE+
Sbjct: 92 PKNTIYDAKRFIGKTFTKQELLEIGKLYQFRVTTDKRGNAGFLVGKKGNFTVITPEEIGG 151
Query: 417 MVLTKMKETAEAYLGKTVQNAVITVPAYFNDLKDKPQKMQVPSQA 551
V+ K++ AE L TV AV++VPA F D+K + ++ S A
Sbjct: 152 YVIKKLRTMAERNLTTTVTKAVMSVPAEF-DIKQRNATVKAASLA 195
>SB_15336| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1068
Score = 73.3 bits (172), Expect = 2e-13
Identities = 36/83 (43%), Positives = 52/83 (62%), Gaps = 1/83 (1%)
Frame = +3
Query: 264 KRLIGRKFEDATVQADMKHWPFEVVS-DGGKPKIKVAYKGEDKTFFPEEVSSMVLTKMKE 440
KR IGRKF D VQ ++ H P++VV I+V Y G+ + F PE+V +M+ T++K
Sbjct: 127 KRFIGRKFSDPAVQKEIPHLPYKVVELPNDSIGIQVQYLGKQEVFSPEQVMAMLFTRLKT 186
Query: 441 TAEAYLGKTVQNAVITVPAYFND 509
TAE L V + VI+VP+Y+ D
Sbjct: 187 TAEIALKTKVTDCVISVPSYYTD 209
Score = 49.6 bits (113), Expect = 3e-06
Identities = 22/52 (42%), Positives = 33/52 (63%)
Frame = +1
Query: 73 VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQ 228
VG D+G + V + G +E +AN+ +R TPS+V+ D +RLIG + KNQ
Sbjct: 4 VGFDVGNQSCYIAVARGGGIETVANEFSDRCTPSFVSLGDKQRLIGTSGKNQ 55
Score = 46.0 bits (104), Expect = 3e-05
Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Frame = +2
Query: 512 QRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKG---TGERNVLIFDLGGGTFDVSIL 682
QR+ DA +GLN LR++N+ TA ++AYG+ K+ RNV+ D+G + V I
Sbjct: 211 QRRCMLDASATAGLNCLRLMNDTTAVSLAYGIYKQDLPTDKPRNVVFVDIGHSSLQVCIT 270
Query: 683 TIEDGIFEV 709
G +V
Sbjct: 271 AFLKGQLKV 279
>SB_57217| Best HMM Match : Helicase_C (HMM E-Value=0.049)
Length = 179
Score = 60.9 bits (141), Expect = 1e-09
Identities = 28/57 (49%), Positives = 42/57 (73%)
Frame = +3
Query: 360 IKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDLKDKPQK 530
I V GE ++F PE++S++VL ++K AEA+LG+ V+ AVITVPA+FND + + K
Sbjct: 2 IAVEVCGEKRSFAPEQISAVVLEQLKADAEAFLGQAVKRAVITVPAHFNDAQRQATK 58
Score = 48.0 bits (109), Expect = 8e-06
Identities = 36/68 (52%), Positives = 39/68 (57%), Gaps = 26/68 (38%)
Frame = +2
Query: 509 SQRQATKDAGTISGLNVL------------------------RIINEPTAAAIAYGLDKK 616
+QRQATKDAGTI+GL+VL RIINEPTAAAIAYGLDK
Sbjct: 52 AQRQATKDAGTIAGLDVLSRTASERPPSRFRRRRPHGRSRVLRIINEPTAAAIAYGLDKA 111
Query: 617 --GTGERN 634
G ERN
Sbjct: 112 RGGKAERN 119
>SB_38725| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 766
Score = 42.7 bits (96), Expect = 3e-04
Identities = 16/25 (64%), Positives = 22/25 (88%)
Frame = +2
Query: 635 VLIFDLGGGTFDVSILTIEDGIFEV 709
+ ++DLGGGTFD+SIL I+ G+FEV
Sbjct: 2 IAVYDLGGGTFDISILEIQKGVFEV 26
>SB_47391| Best HMM Match : HSP70 (HMM E-Value=2.7e-07)
Length = 592
Score = 41.9 bits (94), Expect = 5e-04
Identities = 26/61 (42%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Frame = +1
Query: 124 GKVEIIANDQGNRTTPSYVAFTDTERLI--GDAAKNQVAMNPNN-TISMPNVSSDVSSKM 294
G IIAND G+R TP+ VAF+DTE+LI +V N N +S V + + KM
Sbjct: 83 GNTTIIANDAGDRVTPAMVAFSDTEKLIDKDGLPYYEVESNERNIQVSPKEVINMIYKKM 142
Query: 295 L 297
L
Sbjct: 143 L 143
>SB_31398| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1019
Score = 39.9 bits (89), Expect = 0.002
Identities = 18/51 (35%), Positives = 29/51 (56%)
Frame = +3
Query: 354 PKIKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFN 506
P +K Y+ D TF PEE+ M+L + E + +++ V+TVP +FN
Sbjct: 68 PHVK-NYQQSDVTFTPEELMGMILNHSRFIGEQFADHPIKDVVLTVPPFFN 117
Score = 38.3 bits (85), Expect = 0.006
Identities = 21/62 (33%), Positives = 38/62 (61%), Gaps = 4/62 (6%)
Frame = +2
Query: 509 SQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKK----GTGERNVLIFDLGGGTFDVS 676
++R+A A + GLNVL+I+N TA A+ YGL ++ T E++ + +D+G + +
Sbjct: 119 AERRALLRAAELVGLNVLQIMNSNTAVALNYGLFQQKSFNDTLEKHFMFYDMGASSTVAT 178
Query: 677 IL 682
I+
Sbjct: 179 IV 180
>SB_56988| Best HMM Match : DUF229 (HMM E-Value=2e-06)
Length = 286
Score = 32.3 bits (70), Expect = 0.42
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +1
Query: 454 ISAKLCRM-QLSRFPRTSMISKTSHKR-CRYHLRLERSPNH 570
+SAKLC + LS+ R HKR C Y +++E SP H
Sbjct: 198 LSAKLCHVVTLSKIVRALQTHSHLHKRQCSYQIQIETSPAH 238
>SB_4173| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 743
Score = 32.3 bits (70), Expect = 0.42
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +1
Query: 454 ISAKLCRM-QLSRFPRTSMISKTSHKR-CRYHLRLERSPNH 570
+SAKLC + LS+ R HKR C Y +++E SP H
Sbjct: 655 LSAKLCHVITLSKIVRALQTHSHLHKRQCSYQIQIETSPAH 695
>SB_37014| Best HMM Match : HSP70 (HMM E-Value=5.9e-16)
Length = 212
Score = 31.1 bits (67), Expect = 0.97
Identities = 15/25 (60%), Positives = 20/25 (80%), Gaps = 1/25 (4%)
Frame = +1
Query: 133 EIIANDQGNRTTPSYVAFT-DTERL 204
++I N +G+RTTPS VAFT + ERL
Sbjct: 7 KVIENAEGSRTTPSVVAFTPEGERL 31
>SB_57953| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 712
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = -2
Query: 718 RWIHLEDTILDGKDGHVEGTAAEVKDKY-ISFSSTLFVKTVSNRSSS 581
RWI+L +++ + V G+A E++ KY +++S L +T NR S
Sbjct: 464 RWINLRNSLREQLSPGVLGSALELRVKYFVNYSQLLLEETRHNRQVS 510
>SB_41920| Best HMM Match : Filamin (HMM E-Value=0.00015)
Length = 600
Score = 30.3 bits (65), Expect = 1.7
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = +2
Query: 641 IFDLGGGTFDVSILTIEDGIFEVN 712
+FDLG G+++V L +E G++ V+
Sbjct: 311 VFDLGNGSYEVLFLVMEPGVYRVD 334
>SB_27085| Best HMM Match : Filamin (HMM E-Value=1.5)
Length = 634
Score = 29.9 bits (64), Expect = 2.2
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = +2
Query: 635 VLIFDLGGGTFDVSILTIEDGIFEV 709
V I+DLG GT++++IL E G++ +
Sbjct: 319 VPIYDLGNGTYEMAILFHEPGVYSI 343
>SB_7560| Best HMM Match : Metallothio_PEC (HMM E-Value=1.3)
Length = 350
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/33 (48%), Positives = 19/33 (57%)
Frame = -2
Query: 241 GSSPPGSWRHLR*DARCL*TQHKTEWSCCPGRW 143
GS PPG W R +AR T +T +SC PG W
Sbjct: 206 GSCPPGFWCRKRREARAA-TDLET-YSCPPGFW 236
>SB_2538| Best HMM Match : YTV (HMM E-Value=0.0015)
Length = 779
Score = 29.1 bits (62), Expect = 3.9
Identities = 18/72 (25%), Positives = 37/72 (51%)
Frame = +1
Query: 67 PAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPN 246
P G+DL G+FQ GK+++ + + +++A + +GDAAK ++ +
Sbjct: 547 PTGGLDLS------GMFQ-GKIQVASTAESEAGRKAFLAECERNPNLGDAAKMKLESCLS 599
Query: 247 NTISMPNVSSDV 282
+ +S N+ D+
Sbjct: 600 DLVSTANIFKDL 611
>SB_30415| Best HMM Match : M (HMM E-Value=6.5e-05)
Length = 1312
Score = 28.3 bits (60), Expect = 6.8
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = -2
Query: 709 HLEDTILDGKDGHVEGTAAEVKDKYISFSSTLFVKTVSNRSSSG 578
H+EDT DG DG E +E K + S SN+ G
Sbjct: 486 HIEDTTWDGSDGQREAGFSEQKAERSSSGGNRTTHGASNKPRDG 529
>SB_24848| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1506
Score = 28.3 bits (60), Expect = 6.8
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = -2
Query: 448 SAVSFIFVSTMELTSSGKKVLSSPLYATLILGLPPSLTTSKGQCFMSACTVASSNLRP 275
S F+F ST + +S +KV+ SPL + + P+ G S C V + + P
Sbjct: 1108 SPAKFVFTSTGIVRASTRKVVPSPLRRSKVPPTVPAQRLFNGDRVESICNVQNLSRCP 1165
>SB_41041| Best HMM Match : PDZ (HMM E-Value=1.3e-40)
Length = 933
Score = 27.9 bits (59), Expect = 9.0
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +3
Query: 351 KPKIKVA-YKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDLKDKPQ 527
+P K A Y +D+T E + + LT + ++ NAV P Y++ L+DKP
Sbjct: 435 RPADKQAEYLEDDETDGFESGALLNLTPARSRNPVQRNESYCNAVSRSPGYYSPLRDKPA 494
Query: 528 K 530
+
Sbjct: 495 R 495
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,367,681
Number of Sequences: 59808
Number of extensions: 575593
Number of successful extensions: 1937
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1930
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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