Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0027.Seq
(697 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0364 - 2834446-2834742,2834838-2835197,2835281-2835562,283... 141 4e-34
10_08_0170 + 15397381-15397418,15397519-15397681,15398419-153986... 137 9e-33
08_02_0657 - 19749835-19751942,19753123-19753561 115 4e-26
06_01_0057 - 483710-484309 29 3.5
10_07_0117 + 13028336-13028404,13029073-13029174,13031108-130313... 28 8.1
01_01_1071 - 8446761-8447440,8449334-8450489 28 8.1
>03_01_0364 -
2834446-2834742,2834838-2835197,2835281-2835562,
2835634-2835705,2835798-2836019,2836105-2836871,
2837206-2837434,2838027-2838189,2838313-2838350
Length = 809
Score = 141 bits (342), Expect = 4e-34
Identities = 61/85 (71%), Positives = 72/85 (84%)
Frame = +3
Query: 255 DDNCPDEKIRMNHVVRNNLRVRLSDVVSIAPCPSVKYGKRVHILPIDDSVEGLTGNLFEV 434
DD C + KIRMN VVR NLRVRL DVVS+ CP VKYGKRVHILPIDD+VEG+TGNLF+
Sbjct: 81 DDTCEEPKIRMNKVVRKNLRVRLGDVVSVHQCPDVKYGKRVHILPIDDTVEGITGNLFDA 140
Query: 435 YLKPYFMEAYRPIHRDDTFMVRGGI 509
+LKPYF+EAYRP+ + D F+VRGG+
Sbjct: 141 FLKPYFLEAYRPLRKGDLFLVRGGM 165
Score = 98.3 bits (234), Expect = 5e-21
Identities = 45/70 (64%), Positives = 56/70 (80%)
Frame = +1
Query: 46 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKR 225
+D K D STAIL RK PNRL+V+EA +DDNSV+ + ME+LQLFRGDTVLLKGK+
Sbjct: 11 SDPKGKKDFSTAILERKKSPNRLVVDEATNDDNSVIGMHPDTMEKLQLFRGDTVLLKGKK 70
Query: 226 RKETVCIVLS 255
RK+T+CIVL+
Sbjct: 71 RKDTICIVLA 80
Score = 87.8 bits (208), Expect = 7e-18
Identities = 39/54 (72%), Positives = 46/54 (85%)
Frame = +2
Query: 503 GHRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKREEEEEALNAVGYDDIGGCR 664
G R+VEFKV+ETDP+ +CIVAPDT I CDGEPIKRE+EE L+ VGYDD+GG R
Sbjct: 164 GMRSVEFKVIETDPAEYCIVAPDTEIFCDGEPIKREDEER-LDEVGYDDVGGVR 216
>10_08_0170 +
15397381-15397418,15397519-15397681,15398419-15398647,
15398777-15399543,15399650-15399871,15399961-15400032,
15400100-15400408,15400491-15400850,15401199-15401492
Length = 817
Score = 137 bits (331), Expect = 9e-33
Identities = 59/85 (69%), Positives = 71/85 (83%)
Frame = +3
Query: 255 DDNCPDEKIRMNHVVRNNLRVRLSDVVSIAPCPSVKYGKRVHILPIDDSVEGLTGNLFEV 434
D+ C + KIRMN VVR NLRVRL DVVS+ C VKYGKRVHILPIDD+VEG+TGNLF+
Sbjct: 81 DETCEEPKIRMNKVVRKNLRVRLGDVVSVHQCQDVKYGKRVHILPIDDTVEGITGNLFDA 140
Query: 435 YLKPYFMEAYRPIHRDDTFMVRGGI 509
+LKPYF+EAYRP+ + D F+VRGG+
Sbjct: 141 FLKPYFLEAYRPVRKGDLFLVRGGM 165
Score = 101 bits (243), Expect = 4e-22
Identities = 49/70 (70%), Positives = 57/70 (81%)
Frame = +1
Query: 46 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKR 225
AD K D STAIL RK PNRL+V+EA +DDNSVVAL ME+LQLFRGDTVLLKGK+
Sbjct: 11 ADPKGKKDYSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQLFRGDTVLLKGKK 70
Query: 226 RKETVCIVLS 255
RK+T+CIVL+
Sbjct: 71 RKDTICIVLA 80
Score = 87.8 bits (208), Expect = 7e-18
Identities = 39/54 (72%), Positives = 46/54 (85%)
Frame = +2
Query: 503 GHRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKREEEEEALNAVGYDDIGGCR 664
G R+VEFKV+ETDP+ +CIVAPDT I CDGEPIKRE+EE L+ VGYDD+GG R
Sbjct: 164 GMRSVEFKVIETDPTEYCIVAPDTEIFCDGEPIKREDEER-LDEVGYDDVGGVR 216
>08_02_0657 - 19749835-19751942,19753123-19753561
Length = 848
Score = 115 bits (276), Expect = 4e-26
Identities = 46/83 (55%), Positives = 67/83 (80%)
Frame = +3
Query: 255 DDNCPDEKIRMNHVVRNNLRVRLSDVVSIAPCPSVKYGKRVHILPIDDSVEGLTGNLFEV 434
D++CPD ++R++ VR+NL VRL D+V++ PCP+++ KRV + P DDSVEG++G+LFE
Sbjct: 84 DESCPDGRLRLSRGVRSNLHVRLGDLVTVKPCPTIRNAKRVQLRPFDDSVEGISGDLFEP 143
Query: 435 YLKPYFMEAYRPIHRDDTFMVRG 503
YLKPYFM+A RP+ + D F+VRG
Sbjct: 144 YLKPYFMDALRPVKKGDRFLVRG 166
Score = 66.1 bits (154), Expect = 3e-11
Identities = 35/64 (54%), Positives = 46/64 (71%), Gaps = 5/64 (7%)
Frame = +1
Query: 67 DLSTAILR--RKDRPNRLIVEEA---VSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRK 231
D STAIL +K PNRL+ ++A V+ DNS V LS+A ME+L +FRGD V L+G+RR+
Sbjct: 16 DYSTAILECAKKKSPNRLMADDAEGGVAVDNSTVTLSEATMEELGIFRGDLVTLRGRRRR 75
Query: 232 ETVC 243
E VC
Sbjct: 76 EAVC 79
Score = 62.1 bits (144), Expect = 4e-10
Identities = 34/58 (58%), Positives = 43/58 (74%), Gaps = 3/58 (5%)
Frame = +2
Query: 500 RGH-RAVEFKVVETDPSPF-CIVAPDTVIHCD-GEPIKREEEEEALNAVGYDDIGGCR 664
RGH AVEFKV++T+P+ IVA DT I CD G+P+KRE+EE L+ GYDD+GG R
Sbjct: 165 RGHMHAVEFKVMDTEPNNEPVIVAGDTEIFCDEGDPVKREDEER-LDGPGYDDVGGVR 221
>06_01_0057 - 483710-484309
Length = 199
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = +2
Query: 71 YRPRSSVARTDPTVSLSKKQSAMTTQS-WHFHRPKWSNFNSSVVTQSCSR 217
Y P ART P ++ + A S W F WS+ S V+T+ SR
Sbjct: 62 YFPLGPAARTSPAGTVLCFEDARGGDSTWRFRYSYWSSSQSYVITKGWSR 111
>10_07_0117 +
13028336-13028404,13029073-13029174,13031108-13031367,
13031813-13031882,13031935-13031966,13032736-13032823,
13033431-13033742,13033822-13033896,13034018-13034559,
13034936-13035044,13035713-13035892,13036243-13036404
Length = 666
Score = 27.9 bits (59), Expect = 8.1
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = +3
Query: 363 YGKRVHILPIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFMVRGGIAPSSSKWSKQ 539
Y R+ + +D+ + + V L FM++Y PI +VRG PS++K S Q
Sbjct: 213 YSSRIAVSAVDNIIMVHQIDAKVVILYDVFMDSYAPISAPLPLLVRG--LPSNNKQSAQ 269
>01_01_1071 - 8446761-8447440,8449334-8450489
Length = 611
Score = 27.9 bits (59), Expect = 8.1
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +2
Query: 416 WQSIRSILEAVLHGG-LPSDPS*RHLHGPRGHRAVEFKVVETDPSPFCIVA 565
W + RS AV G + D + R+ GP H+AV + V++D S F +A
Sbjct: 377 WTTFRSATFAVSGAGFIARDMTIRNTAGPAAHQAVALR-VDSDRSAFFRIA 426
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,947,449
Number of Sequences: 37544
Number of extensions: 437222
Number of successful extensions: 1207
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1202
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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