Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0027.Seq
         (697 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49886-1|CAA90050.1|  809|Caenorhabditis elegans Hypothetical pr...   140   1e-33
Z48334-9|CAA88314.1|  810|Caenorhabditis elegans Hypothetical pr...   126   2e-29
Z48045-12|CAA88105.1|  810|Caenorhabditis elegans Hypothetical p...   126   2e-29
AF408755-1|AAO27834.1|  360|Caenorhabditis elegans unknown prote...    31   1.0  
AF047651-4|AAK67208.2|  516|Caenorhabditis elegans Hypothetical ...    31   1.0  
AF047651-3|AAZ82848.1|  515|Caenorhabditis elegans Hypothetical ...    31   1.0  
Z69904-3|CAA93780.1|  372|Caenorhabditis elegans Hypothetical pr...    29   4.2  
Z81075-4|CAB03047.2|  596|Caenorhabditis elegans Hypothetical pr...    28   5.5  
AJ005701-1|CAA06686.1|  596|Caenorhabditis elegans Na/Ca,K-excha...    28   5.5  
Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical pr...    28   7.3  
Z66562-5|CAA91466.1|  250|Caenorhabditis elegans Hypothetical pr...    28   7.3  
AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein...    28   7.3  
AB107358-1|BAD89379.1|  250|Caenorhabditis elegans troponin I 1 ...    28   7.3  
Z81053-1|CAB02877.1|  385|Caenorhabditis elegans Hypothetical pr...    27   9.7  
Z70783-8|CAA94859.1|  175|Caenorhabditis elegans Hypothetical pr...    27   9.7  

>Z49886-1|CAA90050.1|  809|Caenorhabditis elegans Hypothetical
           protein C06A1.1 protein.
          Length = 809

 Score =  140 bits (338), Expect = 1e-33
 Identities = 56/85 (65%), Positives = 74/85 (87%)
 Frame = +3

Query: 255 DDNCPDEKIRMNHVVRNNLRVRLSDVVSIAPCPSVKYGKRVHILPIDDSVEGLTGNLFEV 434
           D++CP+EK+RMN VVRNNLR+RL DVVSI P P++ YG R+H+LPIDD++EGLTGNLF+V
Sbjct: 80  DESCPNEKVRMNRVVRNNLRIRLGDVVSITPAPNLSYGTRIHVLPIDDTIEGLTGNLFDV 139

Query: 435 YLKPYFMEAYRPIHRDDTFMVRGGI 509
           +LKPYF+EAYRP+H+ D F V+  +
Sbjct: 140 FLKPYFLEAYRPLHKGDIFTVQAAM 164



 Score = 93.9 bits (223), Expect = 1e-19
 Identities = 43/67 (64%), Positives = 58/67 (86%)
 Frame = +1

Query: 55  KSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKE 234
           K  D+LSTAIL+ K +PNRLIV+++  DDNSV+A+SQAKM++L LFRGD V+LKGK+RKE
Sbjct: 13  KKNDELSTAILKDKVKPNRLIVDQSEQDDNSVIAVSQAKMDELGLFRGDAVILKGKKRKE 72

Query: 235 TVCIVLS 255
           +V I++S
Sbjct: 73  SVAIIVS 79



 Score = 90.2 bits (214), Expect = 1e-18
 Identities = 37/52 (71%), Positives = 47/52 (90%)
 Frame = +2

Query: 509 RAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKREEEEEALNAVGYDDIGGCR 664
           R VEFKVVET+P+P CIV+PDT+IH +G+PIKREEEEE++N +GYDD+GG R
Sbjct: 165 RTVEFKVVETEPAPACIVSPDTMIHYEGDPIKREEEEESMNDIGYDDLGGVR 216


>Z48334-9|CAA88314.1|  810|Caenorhabditis elegans Hypothetical
           protein C41C4.8 protein.
          Length = 810

 Score =  126 bits (304), Expect = 2e-29
 Identities = 54/84 (64%), Positives = 71/84 (84%)
 Frame = +3

Query: 258 DNCPDEKIRMNHVVRNNLRVRLSDVVSIAPCPSVKYGKRVHILPIDDSVEGLTGNLFEVY 437
           DNCP++KI+MN VVRNNLR RL DVVSI+    ++YGKRVH+LPIDD++EGLTGNLF+V+
Sbjct: 81  DNCPNDKIKMNKVVRNNLRSRLGDVVSISSA-QLEYGKRVHVLPIDDTIEGLTGNLFDVF 139

Query: 438 LKPYFMEAYRPIHRDDTFMVRGGI 509
           L+PYF +AYRP+H+ D F V+  +
Sbjct: 140 LRPYFTDAYRPVHKGDIFTVQAAM 163



 Score = 97.1 bits (231), Expect = 1e-20
 Identities = 43/52 (82%), Positives = 47/52 (90%)
 Frame = +2

Query: 509 RAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKREEEEEALNAVGYDDIGGCR 664
           R VEFKVVETDP+P CIVAPDTVIH +G+PIKREEEEEALN VGYDD+GG R
Sbjct: 164 RTVEFKVVETDPAPACIVAPDTVIHYEGDPIKREEEEEALNEVGYDDLGGVR 215



 Score = 93.5 bits (222), Expect = 1e-19
 Identities = 43/67 (64%), Positives = 59/67 (88%)
 Frame = +1

Query: 55  KSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKE 234
           K  D+L+TAIL+ K RPNRLI++++ +DDNS+V LSQAKM++L LFRGD+V+LKGK+R+E
Sbjct: 13  KKNDELATAILKDKKRPNRLIIDQSDNDDNSMVMLSQAKMDELGLFRGDSVILKGKKRRE 72

Query: 235 TVCIVLS 255
           TV IVL+
Sbjct: 73  TVSIVLN 79


>Z48045-12|CAA88105.1|  810|Caenorhabditis elegans Hypothetical
           protein C41C4.8 protein.
          Length = 810

 Score =  126 bits (304), Expect = 2e-29
 Identities = 54/84 (64%), Positives = 71/84 (84%)
 Frame = +3

Query: 258 DNCPDEKIRMNHVVRNNLRVRLSDVVSIAPCPSVKYGKRVHILPIDDSVEGLTGNLFEVY 437
           DNCP++KI+MN VVRNNLR RL DVVSI+    ++YGKRVH+LPIDD++EGLTGNLF+V+
Sbjct: 81  DNCPNDKIKMNKVVRNNLRSRLGDVVSISSA-QLEYGKRVHVLPIDDTIEGLTGNLFDVF 139

Query: 438 LKPYFMEAYRPIHRDDTFMVRGGI 509
           L+PYF +AYRP+H+ D F V+  +
Sbjct: 140 LRPYFTDAYRPVHKGDIFTVQAAM 163



 Score = 97.1 bits (231), Expect = 1e-20
 Identities = 43/52 (82%), Positives = 47/52 (90%)
 Frame = +2

Query: 509 RAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKREEEEEALNAVGYDDIGGCR 664
           R VEFKVVETDP+P CIVAPDTVIH +G+PIKREEEEEALN VGYDD+GG R
Sbjct: 164 RTVEFKVVETDPAPACIVAPDTVIHYEGDPIKREEEEEALNEVGYDDLGGVR 215



 Score = 93.5 bits (222), Expect = 1e-19
 Identities = 43/67 (64%), Positives = 59/67 (88%)
 Frame = +1

Query: 55  KSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKE 234
           K  D+L+TAIL+ K RPNRLI++++ +DDNS+V LSQAKM++L LFRGD+V+LKGK+R+E
Sbjct: 13  KKNDELATAILKDKKRPNRLIIDQSDNDDNSMVMLSQAKMDELGLFRGDSVILKGKKRRE 72

Query: 235 TVCIVLS 255
           TV IVL+
Sbjct: 73  TVSIVLN 79


>AF408755-1|AAO27834.1|  360|Caenorhabditis elegans unknown protein
           protein.
          Length = 360

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 24/75 (32%), Positives = 36/75 (48%)
 Frame = +2

Query: 431 SILEAVLHGGLPSDPS*RHLHGPRGHRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKRE 610
           S+ E +    +PS+P  + +H   GHR  E   V T  +  C+  P  ++  DG PI   
Sbjct: 162 SMPELIDSSNMPSEPPKKKIHLEVGHRNSEMVGVSTSSNAPCL--PKEIL-TDGVPI--A 216

Query: 611 EEEEALNAVGYDDIG 655
           ++E  L A G   IG
Sbjct: 217 DDEIILEADGECKIG 231


>AF047651-4|AAK67208.2|  516|Caenorhabditis elegans Hypothetical
           protein C05D2.6a protein.
          Length = 516

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 24/75 (32%), Positives = 36/75 (48%)
 Frame = +2

Query: 431 SILEAVLHGGLPSDPS*RHLHGPRGHRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKRE 610
           S+ E +    +PS+P  + +H   GHR  E   V T  +  C+  P  ++  DG PI   
Sbjct: 318 SMPELIDSSNMPSEPPKKKIHLEVGHRNSEMVGVSTSSNAPCL--PKEIL-TDGVPI--A 372

Query: 611 EEEEALNAVGYDDIG 655
           ++E  L A G   IG
Sbjct: 373 DDEIILEADGECKIG 387


>AF047651-3|AAZ82848.1|  515|Caenorhabditis elegans Hypothetical
           protein C05D2.6b protein.
          Length = 515

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 24/75 (32%), Positives = 36/75 (48%)
 Frame = +2

Query: 431 SILEAVLHGGLPSDPS*RHLHGPRGHRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKRE 610
           S+ E +    +PS+P  + +H   GHR  E   V T  +  C+  P  ++  DG PI   
Sbjct: 317 SMPELIDSSNMPSEPPKKKIHLEVGHRNSEMVGVSTSSNAPCL--PKEIL-TDGVPI--A 371

Query: 611 EEEEALNAVGYDDIG 655
           ++E  L A G   IG
Sbjct: 372 DDEIILEADGECKIG 386


>Z69904-3|CAA93780.1|  372|Caenorhabditis elegans Hypothetical
           protein ZK20.3 protein.
          Length = 372

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = +2

Query: 536 TDPSPFCIVAPDTVIHCDGEPIKREEEEE--ALNAVGYD 646
           ++P+P   VAP+     + E +  E+EE   A+  +GYD
Sbjct: 153 SNPAPAADVAPEAAAPAEAEALTDEQEENVLAITGMGYD 191


>Z81075-4|CAB03047.2|  596|Caenorhabditis elegans Hypothetical
           protein F35C12.2a protein.
          Length = 596

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +1

Query: 502 GASRRRVQSGRNRSITILHRGS*YRN 579
           G+  RR  S R +S+ ILH G+ +RN
Sbjct: 292 GSELRRRSSARRQSVPILHSGTMFRN 317


>AJ005701-1|CAA06686.1|  596|Caenorhabditis elegans
           Na/Ca,K-exchanger protein.
          Length = 596

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +1

Query: 502 GASRRRVQSGRNRSITILHRGS*YRN 579
           G+  RR  S R +S+ ILH G+ +RN
Sbjct: 292 GSELRRRSSARRQSVPILHSGTMFRN 317


>Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical
           protein C10C6.1 protein.
          Length = 1565

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
 Frame = +2

Query: 44  WQIIKALMIYRPRSSVARTDPTVSLSKKQSAMT-TQSWHFHRPKWSNFNSSVVTQSCSRA 220
           W       + R RSS+  +DP +S S   S  T T S H      +   SS  T S +R+
Sbjct: 56  WTSASMTNLCRVRSSLGHSDPQLSSSSTNSFNTSTSSLHPATKSSTTALSSFSTSSANRS 115

Query: 221 NAAR 232
            A R
Sbjct: 116 PANR 119


>Z66562-5|CAA91466.1|  250|Caenorhabditis elegans Hypothetical
           protein F42E11.4 protein.
          Length = 250

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +1

Query: 34  LNKMADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQL 183
           L K+  NK+ +DL T  LR++    +++ E  V+  N       AK+E +
Sbjct: 61  LRKLLMNKAAEDLKTQQLRKEQERVKVLAERTVALPNVDSIDDHAKLEAI 110


>AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein
           protein.
          Length = 1565

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
 Frame = +2

Query: 44  WQIIKALMIYRPRSSVARTDPTVSLSKKQSAMT-TQSWHFHRPKWSNFNSSVVTQSCSRA 220
           W       + R RSS+  +DP +S S   S  T T S H      +   SS  T S +R+
Sbjct: 56  WTSASMTNLCRVRSSLGHSDPQLSSSSTNSFNTSTSSLHPATKSSTTALSSFSTSSANRS 115

Query: 221 NAAR 232
            A R
Sbjct: 116 PANR 119


>AB107358-1|BAD89379.1|  250|Caenorhabditis elegans troponin I 1
           protein.
          Length = 250

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +1

Query: 34  LNKMADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQL 183
           L K+  NK+ +DL T  LR++    +++ E  V+  N       AK+E +
Sbjct: 61  LRKLLMNKAAEDLKTQQLRKEQERVKVLAERTVALPNVDSIDDHAKLEAI 110


>Z81053-1|CAB02877.1|  385|Caenorhabditis elegans Hypothetical
           protein E02A10.2 protein.
          Length = 385

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +2

Query: 611 EEEEALNAVGYDDIGGCRN 667
           ++ EA+N VG+DD+  C N
Sbjct: 193 KKREAINVVGHDDLNKCNN 211


>Z70783-8|CAA94859.1|  175|Caenorhabditis elegans Hypothetical
           protein ZK856.11 protein.
          Length = 175

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = +3

Query: 207 LAQGQTPQGNRLHRALDDNCPDEKIRMNHVVRNNLRVRLSDVVSIAP 347
           +AQ +  +GN LH  LD N     + M    R ++ +R    V + P
Sbjct: 27  IAQVRQSRGNNLHEVLDQNGDSYVVSMPTKFRKSVWLRRDQFVVVRP 73


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,521,071
Number of Sequences: 27780
Number of extensions: 361138
Number of successful extensions: 1037
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1035
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)