Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0025.Seq
         (782 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    29   0.57 
SPAC869.04 |||formamidase-like protein|Schizosaccharomyces pombe...    29   0.75 
SPCP1E11.08 |||ribosome biogenesis protein Nsa2 |Schizosaccharom...    28   1.7  
SPAC23H3.03c |||nitrogen permease regulator family|Schizosacchar...    27   4.0  
SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2 |Sc...    26   5.3  
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce...    26   5.3  
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   7.0  
SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyce...    25   9.3  

>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1142

 Score = 29.5 bits (63), Expect = 0.57
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +1

Query: 433 SGCSRCRVWSMFVRYVRFSELVF*YMRPQKLYIF 534
           +GC +  VW  +VR+V F E    +     LY++
Sbjct: 108 NGCGKSYVWPSYVRFVDFDERYTRFANKYSLYLY 141


>SPAC869.04 |||formamidase-like protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 410

 Score = 29.1 bits (62), Expect = 0.75
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -2

Query: 616 ARKIRGRPENAGPDPVRNVRRFSRV 542
           AR I GRPEN G   ++N+ R S+V
Sbjct: 214 ARTIPGRPENGGNCDIKNLSRGSKV 238


>SPCP1E11.08 |||ribosome biogenesis protein Nsa2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 260

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = -3

Query: 645 ARNETDTTLRLGRSAEGRRTRVRIQSE-T*DDFRECHIKYIQFLRPHILKY*LAKTNITH 469
           A  E    +R G+S +    R+  ++    D F    +KY +F+RP  L+    K N+TH
Sbjct: 128 AEEEMFKVIRTGKSKKNSWKRMITKATFVGDGFTRRPVKYERFIRPMALRQ--KKANVTH 185

Query: 468 E 466
           +
Sbjct: 186 K 186


>SPAC23H3.03c |||nitrogen permease regulator
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +3

Query: 459 VDVRALCSF*RVSILIYAASKTVYI*YDTRENRLT 563
           +DVR L SF  +  LIY   K  Y+   T  N LT
Sbjct: 330 LDVRRLISFGTIKGLIYRVHKYPYLERRTMRNNLT 364


>SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 334

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +1

Query: 160 PWNPIEGRYGSEREEHRICGGVRILSADIENSVRDVRGDVAP 285
           P+ P+EG Y + ++ HRI    R   A +E  +R V+    P
Sbjct: 3   PYEPVEGLYVNAKQYHRILKR-REARAKLEERLRGVQTTKKP 43


>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 993

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 17/80 (21%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
 Frame = -1

Query: 440 HPLPVQTRHAPVLRANPYSEVTDPICRLPLPTLFYRLEALH-----LGDLLRIWIRTGAT 276
           HP  ++ R+ P+   N Y+  +  +  L    +   L + +     +G ++ +++ +G+T
Sbjct: 254 HPFYMEQRYIPIGTTNTYTSASHGVLMLSSNGMEVLLRSTYIKYRMIGGIIDLFVYSGST 313

Query: 275 -SPRTSLTEFSMSAESIRTP 219
            SP+ ++ ++    +SI TP
Sbjct: 314 VSPKYTIQQY---VQSIGTP 330


>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 121

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
 Frame = -1

Query: 212 MRCSSRSEPYLPSI-GFHGTRTLRQKRKLFPDLSAASSGHFGLPRRT 75
           MR +   E Y+  + G H   T  Q   LF D     + H  L RRT
Sbjct: 1   MRPAKSVEGYIIIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRT 47


>SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 351

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 358 FPYLHYSID*RLFTLETCCGYGYEPARHL 272
           +P+   S+D R+F LE+  GY  EP   L
Sbjct: 159 YPFDLDSLDKRIFKLESKIGYADEPLSEL 187


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,347,476
Number of Sequences: 5004
Number of extensions: 71053
Number of successful extensions: 202
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)