Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0025.Seq
(782 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_1013 - 7931756-7935109 31 1.0
06_01_0350 + 2534422-2535615 31 1.4
03_04_0090 + 17228253-17228403,17229062-17229129,17229238-172309... 30 1.8
12_02_0407 - 18654134-18654172,18654913-18655803 30 2.4
12_01_0796 + 7292523-7292783,7292963-7293018,7295274-7295331,729... 29 3.2
06_01_0268 + 1989069-1989293,1989938-1990020,1990136-1990357,199... 29 5.5
02_02_0346 - 9214365-9214583,9214830-9214919,9215012-9215177,921... 29 5.5
12_02_0969 - 24936399-24936699,24936779-24936949,24937032-249378... 28 7.3
01_05_0408 + 21888898-21890181,21891289-21891984,21892167-21893705 28 7.3
08_02_1491 + 27500532-27500972 28 9.6
>06_01_1013 - 7931756-7935109
Length = 1117
Score = 31.1 bits (67), Expect = 1.0
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -2
Query: 295 GYEPARHLHVHPSPNFQCPQRVSGHR 218
G+EP R + +HP+P + P R+ G +
Sbjct: 879 GWEPKRFITIHPTPKSKAPARILGSK 904
>06_01_0350 + 2534422-2535615
Length = 397
Score = 30.7 bits (66), Expect = 1.4
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -3
Query: 165 PWNSNAQAEKKTLPGPLGGVFRP 97
PW S+A+ E+K LP PL +F P
Sbjct: 42 PWRSSARLERKLLPPPLPWLFLP 64
>03_04_0090 +
17228253-17228403,17229062-17229129,17229238-17230902,
17231002-17231143,17231648-17232399
Length = 925
Score = 30.3 bits (65), Expect = 1.8
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 6/33 (18%)
Frame = -1
Query: 470 TNIDQTRH--RL----HPLPVQTRHAPVLRANP 390
T IDQ H R+ H +PVQ H+PVL+ NP
Sbjct: 324 TQIDQPSHCQRIKNQDHSVPVQKNHSPVLKTNP 356
>12_02_0407 - 18654134-18654172,18654913-18655803
Length = 309
Score = 29.9 bits (64), Expect = 2.4
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +1
Query: 22 EPGSGTVSIIVPSSLKTSVRRGNPKWPEDAAERSGKSFLFCLSVRVPWNPIEGRY 186
E G+G ++++ PS+ +T P+ P R + CLS ++PI GRY
Sbjct: 115 EEGTGRLTLVNPSTGETLAVPPPPRLPPKRRHRRAPLVVSCLS--FGYHPITGRY 167
>12_01_0796 +
7292523-7292783,7292963-7293018,7295274-7295331,
7295777-7295843,7296461-7296516,7296638-7296691,
7296836-7296961
Length = 225
Score = 29.5 bits (63), Expect = 3.2
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -1
Query: 440 HPLPVQTRHAPVLRANPYSEVTDPICRLPL 351
H L + RH P L+A P S + C+LPL
Sbjct: 107 HSLIIPKRHFPSLQATPPSVIAAICCKLPL 136
>06_01_0268 +
1989069-1989293,1989938-1990020,1990136-1990357,
1990434-1990621,1990711-1990835,1990988-1991039,
1991585-1991874,1992229-1992307,1992527-1992657
Length = 464
Score = 28.7 bits (61), Expect = 5.5
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -1
Query: 434 LPVQTRHAPVLRANPYSEVTDPICRLPLPTLFYRLEAL 321
+P Q + A + A+P + V C LP P+LF L L
Sbjct: 292 IPYQFQEATSILASPLAHVPASSCPLPAPSLFSSLPLL 329
>02_02_0346 -
9214365-9214583,9214830-9214919,9215012-9215177,
9215601-9215911,9215944-9216566,9216779-9216968,
9217096-9217197,9217285-9217425,9217815-9218411,
9219126-9219286,9220709-9220824,9221538-9221654,
9221746-9221808,9221879-9221949
Length = 988
Score = 28.7 bits (61), Expect = 5.5
Identities = 21/61 (34%), Positives = 26/61 (42%)
Frame = -1
Query: 230 IRTPPQMRCSSRSEPYLPSIGFHGTRTLRQKRKLFPDLSAASSGHFGLPRRTLVFKDEGT 51
I+ P M S + + GFHG L+ KL PDL + HF LVF G
Sbjct: 188 IKLYPHM--SGEQKRLIEGAGFHGLVDLKCS-KLRPDLCSWLMEHFNPATNQLVFPGRGA 244
Query: 50 I 48
I
Sbjct: 245 I 245
>12_02_0969 -
24936399-24936699,24936779-24936949,24937032-24937852,
24937946-24938407,24938486-24938890
Length = 719
Score = 28.3 bits (60), Expect = 7.3
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -2
Query: 268 VHPSPNFQCPQRVSGHRRKCGALRVP 191
VHP+P Q S HR C ++ VP
Sbjct: 248 VHPTPRAQHDTNPSHHRSSCASIEVP 273
>01_05_0408 + 21888898-21890181,21891289-21891984,21892167-21893705
Length = 1172
Score = 28.3 bits (60), Expect = 7.3
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = -2
Query: 286 PARHLHVHPSPNFQCPQRVSGHRRKCGALRVPNHISLL*DSMELER 149
P+ H +H S P+R RR+CGAL + + D + + R
Sbjct: 18 PSHHRLLHRSSLLPFPRRHHHRRRRCGALSIARASASAKDGVTVRR 63
>08_02_1491 + 27500532-27500972
Length = 146
Score = 27.9 bits (59), Expect = 9.6
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 617 RKVVSVSFRARSARXCTTAVQRSAQNWHGQR 709
R VV+V+ AR A T A +A W+G+R
Sbjct: 105 RDVVAVASMARGAHHRTMAAPAAAPRWYGRR 135
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,702,268
Number of Sequences: 37544
Number of extensions: 545775
Number of successful extensions: 1761
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1760
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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