Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0023X.Seq
         (452 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosacc...    25   5.4  
SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1 |Schiz...    25   7.2  
SPAPB1A10.11c |||glutamyl-tRNA synthetase, mitochondrial|Schizos...    25   7.2  
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa...    24   9.5  
SPAC2F7.02c |||phosphoprotein phosphatase|Schizosaccharomyces po...    24   9.5  
SPAC13G6.05c |||TRAPP complex subunit Bet3 |Schizosaccharomyces ...    24   9.5  
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ...    24   9.5  

>SPAC2E12.02 |hsf1|hstf, hsf|transcription factor
           Hsf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 609

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -3

Query: 363 KSSPWMTASAHRATSETTWASTHRRPAPRWSTATS 259
           KS   +  + +   S T   S H RP+P+ +TA S
Sbjct: 244 KSRRLLLEAKYPTVSPTNEPSAHSRPSPQGTTANS 278


>SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 440

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +1

Query: 25  DYRFCDCLSLSLYSFYAILDPGTQ 96
           DY   D  SL+L   YA+  PG Q
Sbjct: 37  DYYGADSASLNLTQLYALFRPGEQ 60


>SPAPB1A10.11c |||glutamyl-tRNA synthetase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +3

Query: 153 WKAHQIVVSVVEDAVDHQ 206
           W  H+I +S+ E A++HQ
Sbjct: 452 WNTHEIQISLKEIAMEHQ 469


>SPAC19A8.08 |upf2||nonsense-mediated decay protein
           Upf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1049

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 11/47 (23%), Positives = 22/47 (46%)
 Frame = +2

Query: 308 HVVSEVARCAXAVIQGEDFHLDRKDLVHIQYLPLSRVVHILHVVALT 448
           HV+ +      + +   D    +K L   +++    V+H+L V A+T
Sbjct: 718 HVIDDTLESLFSAVNNSDHVEKQKRLAQARFISELCVIHMLDVRAIT 764


>SPAC2F7.02c |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 325

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +1

Query: 124 CSCFQEPANDGRPT 165
           CSCFQ+ + D +PT
Sbjct: 27  CSCFQDASIDEKPT 40


>SPAC13G6.05c |||TRAPP complex subunit Bet3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 245

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = -3

Query: 369 RWKSSPWMTASAHRATSETTWASTHRRPAPRWSTATSHAN 250
           ++  +P  T+    +TSE++   T  RPA   +  T+ A+
Sbjct: 163 KFSPNPTQTSPGKPSTSESSQTDTSTRPANSQTPTTTRAS 202


>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 817

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = -3

Query: 360 SSPWMTASAHRATSETTWASTH-RRPAPRWSTATSHAN 250
           S+P M  SAH  +S +  AS+H  RPA   S++ + ++
Sbjct: 96  SNPRMPKSAHPISSRSVSASSHFGRPASAVSSSLNSSD 133


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,587,683
Number of Sequences: 5004
Number of extensions: 26363
Number of successful extensions: 73
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)