BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= pg--0023X.Seq (452 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosacc... 25 5.4 SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1 |Schiz... 25 7.2 SPAPB1A10.11c |||glutamyl-tRNA synthetase, mitochondrial|Schizos... 25 7.2 SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa... 24 9.5 SPAC2F7.02c |||phosphoprotein phosphatase|Schizosaccharomyces po... 24 9.5 SPAC13G6.05c |||TRAPP complex subunit Bet3 |Schizosaccharomyces ... 24 9.5 SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ... 24 9.5 >SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosaccharomyces pombe|chr 1|||Manual Length = 609 Score = 25.0 bits (52), Expect = 5.4 Identities = 12/35 (34%), Positives = 18/35 (51%) Frame = -3 Query: 363 KSSPWMTASAHRATSETTWASTHRRPAPRWSTATS 259 KS + + + S T S H RP+P+ +TA S Sbjct: 244 KSRRLLLEAKYPTVSPTNEPSAHSRPSPQGTTANS 278 >SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 440 Score = 24.6 bits (51), Expect = 7.2 Identities = 11/24 (45%), Positives = 13/24 (54%) Frame = +1 Query: 25 DYRFCDCLSLSLYSFYAILDPGTQ 96 DY D SL+L YA+ PG Q Sbjct: 37 DYYGADSASLNLTQLYALFRPGEQ 60 >SPAPB1A10.11c |||glutamyl-tRNA synthetase, mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual Length = 526 Score = 24.6 bits (51), Expect = 7.2 Identities = 8/18 (44%), Positives = 13/18 (72%) Frame = +3 Query: 153 WKAHQIVVSVVEDAVDHQ 206 W H+I +S+ E A++HQ Sbjct: 452 WNTHEIQISLKEIAMEHQ 469 >SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosaccharomyces pombe|chr 1|||Manual Length = 1049 Score = 24.2 bits (50), Expect = 9.5 Identities = 11/47 (23%), Positives = 22/47 (46%) Frame = +2 Query: 308 HVVSEVARCAXAVIQGEDFHLDRKDLVHIQYLPLSRVVHILHVVALT 448 HV+ + + + D +K L +++ V+H+L V A+T Sbjct: 718 HVIDDTLESLFSAVNNSDHVEKQKRLAQARFISELCVIHMLDVRAIT 764 >SPAC2F7.02c |||phosphoprotein phosphatase|Schizosaccharomyces pombe|chr 1|||Manual Length = 325 Score = 24.2 bits (50), Expect = 9.5 Identities = 8/14 (57%), Positives = 11/14 (78%) Frame = +1 Query: 124 CSCFQEPANDGRPT 165 CSCFQ+ + D +PT Sbjct: 27 CSCFQDASIDEKPT 40 >SPAC13G6.05c |||TRAPP complex subunit Bet3 |Schizosaccharomyces pombe|chr 1|||Manual Length = 245 Score = 24.2 bits (50), Expect = 9.5 Identities = 11/40 (27%), Positives = 21/40 (52%) Frame = -3 Query: 369 RWKSSPWMTASAHRATSETTWASTHRRPAPRWSTATSHAN 250 ++ +P T+ +TSE++ T RPA + T+ A+ Sbjct: 163 KFSPNPTQTSPGKPSTSESSQTDTSTRPANSQTPTTTRAS 202 >SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces pombe|chr 1|||Manual Length = 817 Score = 24.2 bits (50), Expect = 9.5 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%) Frame = -3 Query: 360 SSPWMTASAHRATSETTWASTH-RRPAPRWSTATSHAN 250 S+P M SAH +S + AS+H RPA S++ + ++ Sbjct: 96 SNPRMPKSAHPISSRSVSASSHFGRPASAVSSSLNSSD 133 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,587,683 Number of Sequences: 5004 Number of extensions: 26363 Number of successful extensions: 73 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 72 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 73 length of database: 2,362,478 effective HSP length: 67 effective length of database: 2,027,210 effective search space used: 168258430 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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