Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0023X.Seq
(452 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0366 - 16301133-16302592,16302702-16302750 27 5.3
06_01_0277 - 2039129-2040280 27 5.3
03_03_0266 - 16014740-16015045,16015566-16015601,16015623-160156... 27 5.3
12_02_0658 + 21608474-21609401,21609996-21610012 27 7.1
12_01_0818 + 7524549-7524747,7524855-7525863,7525964-7526108,752... 27 7.1
09_02_0203 - 5746068-5746307,5746469-5746729,5746833-5748239,574... 27 7.1
10_07_0172 + 13804803-13805293,13805423-13805537,13805766-138058... 27 9.3
08_01_0514 + 4481383-4481903,4482532-4484590,4485038-4485107,448... 27 9.3
02_05_0659 + 30679809-30680253,30680699-30680715,30682373-306825... 27 9.3
02_02_0637 - 12491706-12492575,12492580-12492657 27 9.3
>08_02_0366 - 16301133-16302592,16302702-16302750
Length = 502
Score = 27.5 bits (58), Expect = 5.3
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -3
Query: 414 RLNGRYWMWTRSLRSRWKSSPWMTASAHRAT 322
R R W SLR ++ +PW+TA AT
Sbjct: 450 RFRSRPRRWMASLRQKYFLNPWLTAGLVAAT 480
>06_01_0277 - 2039129-2040280
Length = 383
Score = 27.5 bits (58), Expect = 5.3
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = -1
Query: 251 IHPVHVHRNHLFPSFLVVHRVLHHGNH--DLVGLPSLAGSWKQEQVKIIYYDVNCV 90
+ P+ + H FP + V ++H G + D G PS+ S +E ++ +DV+ V
Sbjct: 264 LFPLLLSPAHRFPFYDGVFDLVHVGTNALDEGGAPSMGNSGTEEALEFFMFDVDRV 319
>03_03_0266 - 16014740-16015045,16015566-16015601,16015623-16015643,
16016331-16016591,16017504-16018985,16019834-16019989,
16020154-16020277,16020399-16020615,16020877-16021774,
16022947-16023291,16023371-16023565,16023751-16024453,
16024866-16025467
Length = 1781
Score = 27.5 bits (58), Expect = 5.3
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -3
Query: 408 NGRYWMWTRSLRSRWKSSPWMTASAHRATSETTW 307
+G+ WMW R L+ W S+ + A+ S+ W
Sbjct: 918 DGKIWMWHRCLKCPW-SNGFPPATLRIVMSDAAW 950
>12_02_0658 + 21608474-21609401,21609996-21610012
Length = 314
Score = 27.1 bits (57), Expect = 7.1
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = -3
Query: 363 KSSPWMTASAH-RATSETTWASTHRRPAP 280
+S PW+ A R T++T W RRP P
Sbjct: 13 RSRPWLLDDAGGRWTTKTVWMDDPRRPPP 41
>12_01_0818 +
7524549-7524747,7524855-7525863,7525964-7526108,
7526206-7526295,7526404-7526553,7527333-7528094,
7528177-7528496,7528581-7528707,7528792-7528959,
7529054-7530466,7530563-7530823,7530983-7531144,
7531976-7532121,7532601-7532667,7533483-7533587
Length = 1707
Score = 27.1 bits (57), Expect = 7.1
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -3
Query: 405 GRYWMWTRSLRSRWK 361
GR WMWTR LR K
Sbjct: 829 GRIWMWTRCLRCNGK 843
>09_02_0203 -
5746068-5746307,5746469-5746729,5746833-5748239,
5748588-5748714,5748800-5749119,5749202-5749963,
5750749-5750898,5751007-5751096,5751196-5751340,
5751440-5751617,5751753-5752448,5752555-5752753
Length = 1524
Score = 27.1 bits (57), Expect = 7.1
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -3
Query: 405 GRYWMWTRSLRSRWK 361
GR WMWTR LR K
Sbjct: 784 GRIWMWTRCLRCNGK 798
>10_07_0172 +
13804803-13805293,13805423-13805537,13805766-13805831,
13805921-13806009,13806103-13806193,13806312-13806458,
13806575-13806667,13806745-13806846,13806957-13807541,
13808523-13808813,13808866-13808937
Length = 713
Score = 26.6 bits (56), Expect = 9.3
Identities = 13/52 (25%), Positives = 23/52 (44%)
Frame = -1
Query: 260 LMQIHPVHVHRNHLFPSFLVVHRVLHHGNHDLVGLPSLAGSWKQEQVKIIYY 105
++ + +H HL P H + H G DL G+ + Q K+++Y
Sbjct: 635 VLVVEELHSDLGHLTPGAGAAHHLHHDGKFDL-GIHAAQAGSIYSQAKLMFY 685
>08_01_0514 +
4481383-4481903,4482532-4484590,4485038-4485107,
4485434-4485660,4486238-4486324,4486408-4487114,
4487206-4487270,4487323-4487837,4487898-4487991,
4488116-4488398,4488494-4488689,4488913-4489254
Length = 1721
Score = 26.6 bits (56), Expect = 9.3
Identities = 8/23 (34%), Positives = 17/23 (73%)
Frame = +3
Query: 48 FFVVVLILRDIRSWYAIDIVIYN 116
+F+V+ +RD +W AI++ ++N
Sbjct: 175 YFIVIDDVRDAEAWKAIELALFN 197
>02_05_0659 +
30679809-30680253,30680699-30680715,30682373-30682530,
30682570-30682846
Length = 298
Score = 26.6 bits (56), Expect = 9.3
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -3
Query: 375 RSRWKSSPWMTASAHRATSETTWASTHRRPAPRWSTATS 259
R W+S+P + R+T+ A ++RP PR + A S
Sbjct: 10 RFLWRSTPSPHPALGRSTTPPHAARWYKRPLPRTAAAAS 48
>02_02_0637 - 12491706-12492575,12492580-12492657
Length = 315
Score = 26.6 bits (56), Expect = 9.3
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = -3
Query: 366 WKSSPWMTASAHRATSETTWASTHRRP 286
W+++PW+ S TS T+ ++ RP
Sbjct: 135 WRTTPWLPTSCSSPTSSTSPSARATRP 161
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,895,221
Number of Sequences: 37544
Number of extensions: 188076
Number of successful extensions: 645
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 883560296
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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