Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0021.Seq
         (783 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1002.15c |pmc5|med6|mediator complex subunit Pmc5 |Schizosac...    27   4.0  
SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces pom...    26   7.0  

>SPAC1002.15c |pmc5|med6|mediator complex subunit Pmc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 216

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = -1

Query: 177 IITYFNDFPFHKQKSSNNVLILEC*WTAIPTFD 79
           ++ YF+  PF+  KS+N +L ++  + A+   D
Sbjct: 33  VLEYFSQSPFYSHKSNNEMLKMQSQFNALDLGD 65


>SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
 Frame = +1

Query: 19  IYTLIIFQL---SWKVESVRNNLIKSWYCCPLT-F*NQNIIRTFLFMKGKIIKVSYNLRN 186
           +YTL+   +   +WK+ + R+ +IKS    P+T +    I+ T L +   I+ +S+ L++
Sbjct: 658 VYTLLAIFIGFYAWKLHAKRSQMIKSRSPAPMTDYWGPLIVGTALAI-SLIVNMSFALKD 716

Query: 187 TV 192
            V
Sbjct: 717 AV 718


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,923,055
Number of Sequences: 5004
Number of extensions: 56398
Number of successful extensions: 85
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)