Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0021.Seq
         (783 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0724 - 26696401-26696703,26696875-26697025,26697115-266971...    31   1.4  
12_01_0054 + 463743-464414,464896-465024,465336-465440,465524-46...    29   3.2  
11_01_0054 + 416626-417297,417757-417885,418197-418301,418385-41...    29   4.2  

>11_06_0724 -
           26696401-26696703,26696875-26697025,26697115-26697184,
           26697526-26697736,26697928-26698085,26698684-26699500
          Length = 569

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 12/43 (27%), Positives = 25/43 (58%)
 Frame = -2

Query: 458 ILECSLSLILNVCFPCIENLNDQICM*Y*TREVD*I*TLKCNL 330
           + +C+  L+ ++C+ C++N +D     +  R+   I  L+CNL
Sbjct: 221 LAQCAPDLVEDICYNCLQNFSDLATANFAGRQGGRILALRCNL 263


>12_01_0054 +
           463743-464414,464896-465024,465336-465440,465524-465917,
           466325-466422,466505-466753,466920-466979
          Length = 568

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -2

Query: 485 LILS*NKIKILECSLSLILNVCFPCIENLND 393
           L L  NK+ IL+ S ++I+  CFP I  L +
Sbjct: 208 LALKCNKLNILDLSYTMIVKKCFPAIMKLQN 238


>11_01_0054 +
           416626-417297,417757-417885,418197-418301,418385-418778,
           419186-419283,419366-419614,419784-419843
          Length = 568

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -2

Query: 485 LILS*NKIKILECSLSLILNVCFPCIENL 399
           L L  NK+ IL+ S ++I+  CFP I  L
Sbjct: 208 LALKCNKLNILDLSYTMIVKKCFPAIMKL 236


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,766,780
Number of Sequences: 37544
Number of extensions: 264990
Number of successful extensions: 327
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 323
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 327
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)