Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0020X.Seq
(534 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|... 126 2e-30
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz... 126 2e-30
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi... 126 2e-30
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M... 126 2e-30
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch... 126 2e-30
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro... 80 2e-16
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc... 42 4e-05
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc... 36 0.003
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom... 27 1.3
SPCC794.01c |||glucose-6-phosphate 1-dehydrogenase |Schizosaccha... 25 5.4
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 25 9.4
SPCC1020.08 |||wybutosine biosynthesis protein Tyw1|Schizosaccha... 25 9.4
SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomy... 25 9.4
>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 126 bits (304), Expect = 2e-30
Identities = 60/68 (88%), Positives = 65/68 (95%)
Frame = +3
Query: 12 MXIFVKTLTGKTITLEVEPSDTIENVKATIQDKEGIPPNQQRLIFAGEQLEDGRTLSEYN 191
M IFVKTLTGKTITLEVE SDTI+NVK+ IQDKEGIPP+QQRLIFAG+QLEDGRTLS+YN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 192 IQKESTLH 215
IQKESTLH
Sbjct: 61 IQKESTLH 68
>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 126 bits (304), Expect = 2e-30
Identities = 60/68 (88%), Positives = 65/68 (95%)
Frame = +3
Query: 12 MXIFVKTLTGKTITLEVEPSDTIENVKATIQDKEGIPPNQQRLIFAGEQLEDGRTLSEYN 191
M IFVKTLTGKTITLEVE SDTI+NVK+ IQDKEGIPP+QQRLIFAG+QLEDGRTLS+YN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 192 IQKESTLH 215
IQKESTLH
Sbjct: 61 IQKESTLH 68
>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 126 bits (304), Expect = 2e-30
Identities = 60/68 (88%), Positives = 65/68 (95%)
Frame = +3
Query: 12 MXIFVKTLTGKTITLEVEPSDTIENVKATIQDKEGIPPNQQRLIFAGEQLEDGRTLSEYN 191
M IFVKTLTGKTITLEVE SDTI+NVK+ IQDKEGIPP+QQRLIFAG+QLEDGRTLS+YN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 192 IQKESTLH 215
IQKESTLH
Sbjct: 61 IQKESTLH 68
Score = 56.4 bits (130), Expect = 3e-09
Identities = 26/68 (38%), Positives = 38/68 (55%)
Frame = +2
Query: 251 QEKLYSTPXXXXXXXXXXXXXXXRFYKVDENGKIHRLXRDWTGEQCGAGVFMAVMEDRHY 430
++K Y+TP ++YKV+++G + RL R+ CGA FMA +DR Y
Sbjct: 81 KKKTYTTPKKIKHKHKKVELAVLKYYKVEDDGSVKRLRRECPN--CGASTFMANHKDRLY 138
Query: 431 CGKCHSTL 454
CG+CH TL
Sbjct: 139 CGRCHLTL 146
>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 382
Score = 126 bits (304), Expect = 2e-30
Identities = 60/68 (88%), Positives = 65/68 (95%)
Frame = +3
Query: 12 MXIFVKTLTGKTITLEVEPSDTIENVKATIQDKEGIPPNQQRLIFAGEQLEDGRTLSEYN 191
M IFVKTLTGKTITLEVE SDTI+NVK+ IQDKEGIPP+QQRLIFAG+QLEDGRTLS+YN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 192 IQKESTLH 215
IQKESTLH
Sbjct: 61 IQKESTLH 68
Score = 126 bits (304), Expect = 2e-30
Identities = 60/68 (88%), Positives = 65/68 (95%)
Frame = +3
Query: 12 MXIFVKTLTGKTITLEVEPSDTIENVKATIQDKEGIPPNQQRLIFAGEQLEDGRTLSEYN 191
M IFVKTLTGKTITLEVE SDTI+NVK+ IQDKEGIPP+QQRLIFAG+QLEDGRTLS+YN
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
Query: 192 IQKESTLH 215
IQKESTLH
Sbjct: 137 IQKESTLH 144
Score = 126 bits (304), Expect = 2e-30
Identities = 60/68 (88%), Positives = 65/68 (95%)
Frame = +3
Query: 12 MXIFVKTLTGKTITLEVEPSDTIENVKATIQDKEGIPPNQQRLIFAGEQLEDGRTLSEYN 191
M IFVKTLTGKTITLEVE SDTI+NVK+ IQDKEGIPP+QQRLIFAG+QLEDGRTLS+YN
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212
Query: 192 IQKESTLH 215
IQKESTLH
Sbjct: 213 IQKESTLH 220
Score = 126 bits (304), Expect = 2e-30
Identities = 60/68 (88%), Positives = 65/68 (95%)
Frame = +3
Query: 12 MXIFVKTLTGKTITLEVEPSDTIENVKATIQDKEGIPPNQQRLIFAGEQLEDGRTLSEYN 191
M IFVKTLTGKTITLEVE SDTI+NVK+ IQDKEGIPP+QQRLIFAG+QLEDGRTLS+YN
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288
Query: 192 IQKESTLH 215
IQKESTLH
Sbjct: 289 IQKESTLH 296
Score = 126 bits (304), Expect = 2e-30
Identities = 60/68 (88%), Positives = 65/68 (95%)
Frame = +3
Query: 12 MXIFVKTLTGKTITLEVEPSDTIENVKATIQDKEGIPPNQQRLIFAGEQLEDGRTLSEYN 191
M IFVKTLTGKTITLEVE SDTI+NVK+ IQDKEGIPP+QQRLIFAG+QLEDGRTLS+YN
Sbjct: 305 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 364
Query: 192 IQKESTLH 215
IQKESTLH
Sbjct: 365 IQKESTLH 372
>SPAC589.10c |||ribomal-ubiquitin fusion protein
Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 126 bits (304), Expect = 2e-30
Identities = 60/68 (88%), Positives = 65/68 (95%)
Frame = +3
Query: 12 MXIFVKTLTGKTITLEVEPSDTIENVKATIQDKEGIPPNQQRLIFAGEQLEDGRTLSEYN 191
M IFVKTLTGKTITLEVE SDTI+NVK+ IQDKEGIPP+QQRLIFAG+QLEDGRTLS+YN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 192 IQKESTLH 215
IQKESTLH
Sbjct: 61 IQKESTLH 68
Score = 56.4 bits (130), Expect = 3e-09
Identities = 26/68 (38%), Positives = 38/68 (55%)
Frame = +2
Query: 251 QEKLYSTPXXXXXXXXXXXXXXXRFYKVDENGKIHRLXRDWTGEQCGAGVFMAVMEDRHY 430
++K Y+TP ++YKV+++G + RL R+ CGA FMA +DR Y
Sbjct: 81 KKKTYTTPKKIKHKHKKVELAVLKYYKVEDDGSVKRLRRECPN--CGASTFMANHKDRLY 138
Query: 431 CGKCHSTL 454
CG+CH TL
Sbjct: 139 CGRCHLTL 146
>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
protein modifier Ned8|Schizosaccharomyces pombe|chr
2|||Manual
Length = 78
Score = 80.2 bits (189), Expect = 2e-16
Identities = 33/68 (48%), Positives = 50/68 (73%)
Frame = +3
Query: 12 MXIFVKTLTGKTITLEVEPSDTIENVKATIQDKEGIPPNQQRLIFAGEQLEDGRTLSEYN 191
M I VKTLTGK I L+++P+D + +K +++KEGIPP+QQRLI+AG+Q+ D + Y+
Sbjct: 1 MLIKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYH 60
Query: 192 IQKESTLH 215
++ S LH
Sbjct: 61 LEGGSVLH 68
>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 42.3 bits (95), Expect = 4e-05
Identities = 20/58 (34%), Positives = 32/58 (55%)
Frame = +3
Query: 39 GKTITLEVEPSDTIENVKATIQDKEGIPPNQQRLIFAGEQLEDGRTLSEYNIQKESTL 212
GK LE+EP++T +K + +PP +Q++I G QL+D L I+ +TL
Sbjct: 10 GKKYDLEIEPNETGSTLKHQLYSLTQVPPERQKVIVKGGQLKDDVLLGSVGIKPNATL 67
>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 36.3 bits (80), Expect = 0.003
Identities = 18/64 (28%), Positives = 31/64 (48%)
Frame = +3
Query: 24 VKTLTGKTITLEVEPSDTIENVKATIQDKEGIPPNQQRLIFAGEQLEDGRTLSEYNIQKE 203
+K + + V+ ++ +K I I +QRLI+AG L+D +L Y IQ
Sbjct: 8 IKAANDQKYAVTVDSESSVLALKEAIAPVADIEKERQRLIYAGRVLKDEESLKTYKIQDG 67
Query: 204 STLH 215
++H
Sbjct: 68 HSIH 71
>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
Msp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 903
Score = 27.5 bits (58), Expect = 1.3
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -1
Query: 201 PSGYCTPRGYVHLPAALQQRSTAVDWEGF 115
PS + PRG V+ P+ +++R + + GF
Sbjct: 17 PSSFLKPRGLVYRPSQIRRRVSLLSLSGF 45
>SPCC794.01c |||glucose-6-phosphate 1-dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 475
Score = 25.4 bits (53), Expect = 5.4
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -1
Query: 156 ALQQRSTAVDWEGFPLCLEL*LSHSRWYLTAR 61
ALQ RS A W+G P+ + R Y AR
Sbjct: 311 ALQLRSEAPRWKGIPIIISAGKGLDRDYFEAR 342
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 24.6 bits (51), Expect = 9.4
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 107 QRGNPSQSTAVDLCWRAAGRW 169
+R T VDL WRAAG++
Sbjct: 1169 ERAIDPSGTNVDLLWRAAGKF 1189
>SPCC1020.08 |||wybutosine biosynthesis protein
Tyw1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 688
Score = 24.6 bits (51), Expect = 9.4
Identities = 8/27 (29%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = -1
Query: 180 RGYVHLPAA-LQQRSTAVDWEGFPLCL 103
RG + P++ +++++ +DW+ PLC+
Sbjct: 67 RGKIGSPSSSIRKQNDTIDWKNSPLCV 93
>SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 24.6 bits (51), Expect = 9.4
Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 3/64 (4%)
Frame = +3
Query: 33 LTGKTITLEVEPSDTIENVKATIQDKEGIPPNQ---QRLIFAGEQLEDGRTLSEYNIQKE 203
L G T EV T+ + + + +G P N + I A +G TL+ YN
Sbjct: 94 LKGPERTSEVSLPQTVNLSEISNNNDKGQPTNTPPVRSTIVAPSLYSEGSTLNHYNNGSH 153
Query: 204 STLH 215
LH
Sbjct: 154 QVLH 157
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,082,357
Number of Sequences: 5004
Number of extensions: 40152
Number of successful extensions: 125
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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